Multiple platform build/check report for BioC 3.15 - INSTALL results for transcriptR on riesling1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 20.04.4 LTS)	x86_64	R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences"	4334
riesling1	Windows Server 2019 Standard	x64	R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"	4097
palomino3	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences"	4083
merida1	macOS 10.14.6 Mojave	x86_64	R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences"	4134
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

Hostname

Arch (*)

R version

Installed pkgs

nebbiolo1

Linux (Ubuntu 20.04.4 LTS)

x86_64

R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences"

4334

riesling1

Windows Server 2019 Standard

x64

R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"

4097

palomino3

Windows Server 2022 Datacenter

x64

R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences"

4083

merida1

macOS 10.14.6 Mojave

x86_64

R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences"

4134

Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for transcriptR on riesling1

To the developers/maintainers of the transcriptR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/transcriptR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

transcriptR 1.23.1 (landing page)
Armen R. Karapetyan

Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)

git_url: https://git.bioconductor.org/packages/transcriptR

git_branch: master

git_last_commit: ca08999

git_last_commit_date: 2021-11-20 20:56:28 -0400 (Sat, 20 Nov 2021)

nebbiolo1

Linux (Ubuntu 20.04.4 LTS) / x86_64

riesling1

Windows Server 2019 Standard / x64

palomino3

Windows Server 2022 Datacenter / x64

merida1

macOS 10.14.6 Mojave / x86_64

Summary

Package: transcriptR

Version: 1.23.1

Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL transcriptR

StartedAt: 2022-03-17 16:10:59 -0400 (Thu, 17 Mar 2022)

EndedAt: 2022-03-17 16:12:27 -0400 (Thu, 17 Mar 2022)

EllapsedTime: 87.8 seconds

RetCode: 0

Status: OK

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL transcriptR
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'transcriptR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'transcriptR'
    finding HTML links ... done
    ChipDataSet-class                       html  
    TranscriptionDataSet-class              html  
    addFeature-methods                      html  
    annot                                   html  
    finding level-2 HTML links ... done

    annotateTranscripts-methods             html  
    breakTranscriptsByPeaks-methods         html  
    cds                                     html  
    constructCDS                            html  
    constructTDS                            html  
    detectTranscripts-methods               html  
    estimateBackground-methods              html  
    estimateGapDistance-methods             html  
    exportCoverage-methods                  html  
    getConfusionMatrix-methods              html  
    getGenomicAnnot-methods                 html  
    getPeaks-methods                        html  
    getPredictorSignificance-methods        html  
    getProbTreshold-methods                 html  
    getQuadProb-methods                     html  
    getTestedGapDistances-methods           html  
    getTranscripts-methods                  html  
    peaksToBed-methods                      html  
    plotErrorRate-methods                   html  
    plotFeatures-methods                    html  
    plotGenomicAnnot-methods                html  
    plotROC-methods                         html  
    predictStrand-methods                   html  
    predictTssOverlap-methods               html  
    show                                    html  
    tds                                     html  
    transcriptsToBed-methods                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (transcriptR)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'nullranges' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'PAST' is missing or broken
 done