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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL synapter
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'synapter' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'synapter'
    finding HTML links ... done
    MasterFdrResults-class                  html  
    MasterPeptides-class                    html  
    Synapter                                html  
    finding level-2 HTML links ... done

    createUniquePeptideDbRds                html  
    defunct                                 html  
    estimateMasterFdr                       html  
    inspectPeptideScores                    html  
    makeMaster                              html  
    plotCrossMatching                       html  
    requantify                              html  
    rescaleForTop3                          html  
    synapter-package                        html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-synapter/00new/synapter/help/synapter.html
    synapterGuide                           html  
    synapterPlgsAgreement                   html  
    synapterTinyData                        html  
    synergise                               html  
    synergise2                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (synapter)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'qsmooth' is missing or broken
 done