############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL simplifyEnrichment ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'simplifyEnrichment' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'simplifyEnrichment' finding HTML links ... done DO_similarity html GO_similarity html all_clustering_methods html anno_word_cloud html anno_word_cloud_from_GO html area_above_ecdf html binary_cut html cluster_by_MCL html cluster_by_apcluster html cluster_by_dynamicTreeCut html cluster_by_hdbscan html cluster_by_igraph html cluster_by_kmeans html cluster_by_mclust html cluster_by_pam html cluster_terms html cmp_make_clusters html cmp_make_plot html compare_clustering_methods html count_words html dend_node_apply html difference_score html edit_node html export_to_shiny_app html guess_ont html heightDetails.word_cloud html ht_clusters html keyword_enrichment_from_GO html partition_by_hclust html partition_by_kmeans html partition_by_kmeanspp html partition_by_pam html plot_binary_cut html random_DO html random_GO html register_clustering_methods html remove_clustering_methods html reset_clustering_methods html scale_fontsize html se_opt html select_cutoff html simplifyEnrichment html simplifyGO html simplifyGOFromMultipleLists html subset_enrichResult html term_similarity html term_similarity_from_KEGG html term_similarity_from_MSigDB html term_similarity_from_Reactome html term_similarity_from_enrichResult html term_similarity_from_gmt html widthDetails.word_cloud html word_cloud_grob html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (simplifyEnrichment) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'RUVcorr' is missing or broken done