############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf sSNAPPY.buildbin-libdir && mkdir sSNAPPY.buildbin-libdir && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=sSNAPPY.buildbin-libdir sSNAPPY_1.0.2.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'sSNAPPY' ... ** using staged installation ** libs g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c code.cpp -o code.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c normaliseByPermutation.cpp -o normaliseByPermutation.o In file included from F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/armadillo:22, from F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/RcppArmadilloForward.h:56, from F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from normaliseByPermutation.cpp:2: F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:333:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 333 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:338:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 338 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:341:61: note: '#pragma message: INFO: see the documentation for details' 341 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ssPertScore.cpp -o ssPertScore.o In file included from F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/armadillo:22, from F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/RcppArmadilloForward.h:56, from F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from ssPertScore.cpp:2: F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:333:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 333 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:338:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 338 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ F:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:341:61: note: '#pragma message: INFO: see the documentation for details' 341 | #pragma message ("INFO: see the documentation for details") | ^ g++ -shared -s -static-libgcc -o sSNAPPY.dll tmp.def RcppExports.o code.o normaliseByPermutation.o ssPertScore.o -fopenmp -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.15-bioc/meat/sSNAPPY.buildbin-libdir/00LOCK-sSNAPPY/00new/sSNAPPY/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'sSNAPPY' as sSNAPPY_1.0.2.zip * DONE (sSNAPPY)