############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf qrqc.buildbin-libdir && mkdir qrqc.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=qrqc.buildbin-libdir qrqc_1.49.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'qrqc' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c R_init_io.c -o R_init_io.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c io.c -o io.o In file included from io.c:12: D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include/htslib/kseq.h:176:13: warning: 'kseq_destroy' defined but not used [-Wunused-function] SCOPE void kseq_destroy(kseq_t *ks) \ ^~~~~~~~~~~~ D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include/htslib/kseq.h:241:2: note: in expansion of macro '__KSEQ_BASIC' __KSEQ_BASIC(SCOPE, type_t) \ ^~~~~~~~~~~~ D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include/htslib/kseq.h:244:35: note: in expansion of macro 'KSEQ_INIT2' #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) ^~~~~~~~~~ io.c:29:1: note: in expansion of macro 'KSEQ_INIT' KSEQ_INIT(FILE_TYPE*, gzreadclone) ^~~~~~~~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o qrqc.dll tmp.def R_init_io.o io.o D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/usrlib/x64/libhts.a -LC:/extsoft/lib/x64 -lcurl -lrtmp -lssl -lssh2 -lcrypto -lgdi32 -lz -lws2_32 -lwldap32 -lwinmm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/meat/qrqc.buildbin-libdir/00LOCK-qrqc/00new/qrqc/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'qrqc' finding HTML links ... done FASTASummary-class html FASTQSummary-class html SequenceSummary-class html basePlot-methods html calcKL html gcPlot-methods html geom_qlinerange html getBase-methods html getBaseProp-methods html getGC-methods html getKmer-methods html getMCQual-methods html getQual-methods html getSeqlen-methods html kmerEntropyPlot html kmerKLPlot html list2df html makeReport html plotBases html plotGC html plotQuals html plotSeqLengths html qualPlot-methods html readSeqFile html scale_color_dna html scale_color_iupac html seqlenPlot-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'qrqc' as qrqc_1.49.0.zip * DONE (qrqc)