##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL oligoClasses
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'oligoClasses' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'oligoClasses'
    finding HTML links ... done
    AlleleSet-class                         html  
    finding level-2 HTML links ... done

    AlleleSet-methods                       html  
    AssayData-methods                       html  
    AssayDataList                           html  
    BeadStudioSet-class                     html  
    BeadStudioSetList-class                 html  
    CNSet-class                             html  
    ClassesNotExported                      html  
    CopyNumberSet-class                     html  
    CopyNumberSet-methods                   html  
    DBPDInfo-class                          html  
    FeatureSetExtensions-class              html  
    GRanges-methods                         html  
    GenomeAnnotatedDataFrame-class          html  
    GenomeAnnotatedDataFrameFrom-methods    html  
    SnpSet-methods                          html  
    SnpSet2-class                           html  
    SnpSuperSet-class                       html  
    SummarizedExperiment-methods            html  
    affyPlatforms                           html  
    annotationPackages                      html  
    assayDataList-methods                   html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-oligoClasses/00new/oligoClasses/help/assayDataList.html
    batch                                   html  
    batchStatistics                         html  
    celfileDate                             html  
    celfileName                             html  
    checkExists                             html  
    checkOrder                              html  
    chromosome-methods                      html  
    chromosome2integer                      html  
    clusterOpts                             html  
    clusterOptsDeprecated                   html  
    createFF                                html  
    data-efsExample                         html  
    data-scqsExample                        html  
    data-sfsExample                         html  
    data-sqsExample                         html  
    db                                      html  
    defunct                                 html  
    exprs-methods                           html  
    featureDataList-methods                 html  
    ff_matrix                               html  
    ff_or_matrix-class                      html  
    ffdf                                    html  
    fileConnections                         html  
    flags                                   html  
    gSet-class                              html  
    gSetList-class                          html  
    generics                                html  
    genomeBuild                             html  
    geometry-methods                        html  
    getBar                                  html  
    getSequenceLengths                      html  
    i2p_p2i                                 html  
    integerMatrix                           html  
    is.ffmatrix                             html  
    isPackageLoaded                         html  
    isSnp-methods                           html  
    kind                                    html  
    largeObjects                            html  
    ldOpts                                  html  
    length-methods                          html  
    library2                                html  
    list.celfiles                           html  
    locusLevelData                          html  
    makeFeatureGRanges                      html  
    manufacturer-methods                    html  
    ocLapply                                html  
    oligoSetExample                         html  
    oligoSnpSet-methods                     html  
    parStatus                               html  
    pdPkgFromBioC                           html  
    platform-methods                        html  
    pmFragmentLength-methods                html  
    position-methods                        html  
    requireAnnotation                       html  
    requireClusterPkgSetDeprecated          html  
    sampleNames-methods                     html  
    splitVec                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (oligoClasses)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'sRACIPE' is missing or broken
 done