##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL nearBynding
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'nearBynding' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'nearBynding'
    finding HTML links ... done
    CleanBAMtoBG                            html  
    CleanBEDtoBG                            html  
    ExtractTranscriptomeSequence            html  
    GenomeMappingToChainFile                html  
    assessGrouping                          html  
    bindingContextDistance                  html  
    bindingContextDistanceCapR              html  
    getChainChrSize                         html  
    get_outfiles                            html  
    liftOverToExomicBG                      html  
    nearBynding-package                     html  
    processCapRout                          html  
    runCapR                                 html  
    runStereogene                           html  
    runStereogeneOnCapR                     html  
    symmetryCapR                            html  
    symmetryContext                         html  
    visualizeCapRStereogene                 html  
    visualizeStereogene                     html  
    write_config                            html  
    write_fasta                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nearBynding)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'recount' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'regionReport' is missing or broken
 done