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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL girafe
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'girafe' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c coverage.cpp -o coverage.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c girafe_init.c -o girafe_init.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o girafe.dll tmp.def coverage.o girafe_init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-girafe/00new/girafe/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'IRanges' for requests: 'score', 'score<-', 'sort' when loading 'girafe'
Creating a generic function for 'sample' from package 'base' in package 'girafe'
** help
*** installing help indices
  converting help for package 'girafe'
    finding HTML links ... done
    AlignedGenomeIntervals-class            html  
    agiFromBam                              html  
    countReadsAnnotated                     html  
    fracOverlap                             html  
    getFeatureCounts                        html  
    girafe-internal                         html  
    intPhred                                html  
    medianByPosition                        html  
    negbinomsig                             html  
    perWindow                               html  
    plotAligned                             html  
    plotReads                               html  
    plotnegbinomfit                         html  
    reduce-extras                           html  
    trimAdapter                             html  
    weightedConsensusMatrix                 html  
    whichNearestMethods                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'IRanges' for requests: 'score', 'score<-', 'sort' when loading 'girafe'
** testing if installed package can be loaded from final location
No methods found in package 'IRanges' for requests: 'score', 'score<-', 'sort' when loading 'girafe'
** testing if installed package keeps a record of temporary installation path
* DONE (girafe)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'subSeq' is missing or broken
 done