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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:flowCyBar.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings flowCyBar_1.31.0.tar.gz
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/flowCyBar.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowCyBar/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowCyBar' version '1.31.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowCyBar' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
correlation,data.frame : <anonymous>: no visible global function
  definition for 'as.dist'
correlation,data.frame : est: no visible global function definition for
  'cor.test'
correlation,data.frame : pval: no visible global function definition
  for 'cor.test'
correlation,matrix : <anonymous>: no visible global function definition
  for 'as.dist'
correlation,matrix : est: no visible global function definition for
  'cor.test'
correlation,matrix : pval: no visible global function definition for
  'cor.test'
cybar_plot,data.frame-data.frame: no visible global function definition
  for 'layout'
cybar_plot,data.frame-data.frame: no visible global function definition
  for 'par'
cybar_plot,data.frame-data.frame: no visible global function definition
  for 'boxplot'
cybar_plot,data.frame-matrix: no visible global function definition for
  'layout'
cybar_plot,data.frame-matrix: no visible global function definition for
  'par'
cybar_plot,data.frame-matrix: no visible global function definition for
  'boxplot'
cybar_plot,matrix-data.frame: no visible global function definition for
  'layout'
cybar_plot,matrix-data.frame: no visible global function definition for
  'par'
cybar_plot,matrix-data.frame: no visible global function definition for
  'boxplot'
cybar_plot,matrix-matrix: no visible global function definition for
  'layout'
cybar_plot,matrix-matrix: no visible global function definition for
  'par'
cybar_plot,matrix-matrix: no visible global function definition for
  'boxplot'
cybar_plot,missing-data.frame: no visible global function definition
  for 'boxplot'
cybar_plot,missing-matrix: no visible global function definition for
  'boxplot'
nmds,data.frame: no visible global function definition for 'text'
nmds,data.frame: no visible global function definition for 'points'
nmds,data.frame: no visible global function definition for 'legend'
nmds,matrix: no visible global function definition for 'text'
nmds,matrix: no visible global function definition for 'points'
nmds,matrix: no visible global function definition for 'legend'
normalize,data.frame : <anonymous>: no visible global function
  definition for 'head'
normalize,matrix : <anonymous>: no visible global function definition
  for 'head'
Undefined global functions or variables:
  as.dist boxplot cor.test head layout legend par points text
Consider adding
  importFrom("graphics", "boxplot", "layout", "legend", "par", "points",
             "text")
  importFrom("stats", "as.dist", "cor.test")
  importFrom("utils", "head")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbuild/bbs-3.15-bioc/meat/flowCyBar.Rcheck/00check.log'
for details.