Pierre Khoueiry
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/fcScan |
| git_branch: master |
| git_last_commit: d0c7c16 |
| git_last_commit_date: 2021-10-26 12:53:32 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:30 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the fcScan package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fcScan.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 635/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| fcScan 1.9.0 (landing page) Pierre Khoueiry
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: fcScan |
| Version: 1.9.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:fcScan.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings fcScan_1.9.0.tar.gz |
| StartedAt: 2022-03-17 19:04:59 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 19:16:55 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 716.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: fcScan.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:fcScan.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings fcScan_1.9.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/fcScan.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'fcScan/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'fcScan' version '1.9.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'fcScan' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
getCluster 0.17 0 12.42
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
fcScan.Rcheck/00install.out
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL fcScan
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'fcScan' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'fcScan'
finding HTML links ... done
getCluster html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fcScan)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'yarn' is missing or broken
done
fcScan.Rcheck/tests/runTests.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Loading required package: GenomeInfoDb
17 entries loaded
Running getCluster using 1 threads
Time difference of 9.734245 secs
Sites in condition do not match sites in data
3 entries loaded
Running getCluster using 1 threads
Time difference of 11.78102 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 9.09351 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.72357 secs
17 entries loaded
Running getCluster using 1 threads
No cluster found
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.06206 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.7651 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.46819 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.07754 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 9.296296 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.2805 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 9.671191 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 11.45227 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 12.04592 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 11.71777 secs
10 entries loaded
Running getCluster using 1 threads
Time difference of 10.88968 secs
10 entries loaded
Running getCluster using 1 threads
No cluster found
10 entries loaded
Running getCluster using 1 threads
Time difference of 9.405368 secs
16 entries loaded
Running getCluster using 1 threads
Time difference of 10.49898 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 9.998999 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 10.10834 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 9.748974 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 11.56125 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 10.95191 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.34258 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.13946 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.5925 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 9.530108 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 9.483225 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.07675 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.13923 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.88924 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.0612 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.85782 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.88904 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.13926 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.76402 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 9.639298 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.34232 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.79522 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.514 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.96718 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.34211 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.27976 secs
RUNIT TEST PROTOCOL -- Thu Mar 17 19:16:29 2022
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
11.92 1.10 481.34
fcScan.Rcheck/fcScan-Ex.timings
| name | user | system | elapsed | |
| getCluster | 0.17 | 0.00 | 12.42 | |