############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf discordant.buildbin-libdir && mkdir discordant.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=discordant.buildbin-libdir discordant_1.19.2.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'discordant' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c discordant.cpp -o discordant.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o discordant.dll tmp.def RcppExports.o discordant.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/meat/discordant.buildbin-libdir/00LOCK-discordant/00new/discordant/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'discordant' finding HTML links ... done TCGA_Breast_RNASeq html TCGA_Breast_RNASeq_voom html TCGA_Breast_miRNASeq html TCGA_Breast_miRNASeq_voom html TCGA_GBM_miRNA_microarray html TCGA_GBM_transcript_microarray html createVectors html discordant html discordantRun html fishersTrans html splitMADOutlier html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'discordant' as discordant_1.19.2.zip * DONE (discordant)