| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-03-18 11:06:58 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the banocc package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/banocc.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 110/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| banocc 1.19.0 (landing page) George Weingart
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: banocc |
| Version: 1.19.0 |
| Command: chmod a+r banocc -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data banocc |
| StartedAt: 2022-03-17 16:24:01 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 16:24:50 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 49.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### chmod a+r banocc -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data banocc
###
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* checking for file 'banocc/DESCRIPTION' ... OK
* preparing 'banocc':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'banocc-vignette.Rmd' using rmarkdown
DIAGNOSTIC(S) FROM PARSER:
Info: integer division implicitly rounds to integer. Found int division: P * P - 1 / 2
Positive values rounded down, negative values rounded up or down in platform-dependent way.
make cmd is
make -f "D:/biocbuild/bbs-3.15-bioc/R/etc/x64/Makeconf" -f "D:/biocbuild/bbs-3.15-bioc/R/share/make/winshlib.mk" CXX='$(CXX14) $(CXX14STD)' CXXFLAGS='$(CXX14FLAGS)' CXXPICFLAGS='$(CXX14PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX14LDFLAGS)' SHLIB_LD='$(SHLIB_CXX14LD)' SHLIB="file28ec36b35040.dll" WIN=64 TCLBIN=64 OBJECTS="file28ec36b35040.o"
make would use
if test "zfile28ec36b35040.o" != "z"; then \
if test -e "file28ec36b35040-win.def"; then \
echo "C:/rtools40/mingw64/bin/"g++ -shared -s -static-libgcc -o file28ec36b35040.dll file28ec36b35040-win.def file28ec36b35040.o -L"C:/extsoft/lib/x64" -L"C:/extsoft/lib" -L"D:/biocbuild/bbs-3.15-bioc/R/bin/x64" -lR ; \
"C:/rtools40/mingw64/bin/"g++ -shared -s -static-libgcc -o file28ec36b35040.dll file28ec36b35040-win.def file28ec36b35040.o -L"C:/extsoft/lib/x64" -L"C:/extsoft/lib" -L"D:/biocbuild/bbs-3.15-bioc/R/bin/x64" -lR ; \
else \
echo EXPORTS > tmp.def; \
"C:/rtools40/mingw64/bin/"nm file28ec36b35040.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
echo "C:/rtools40/mingw64/bin/"g++ -shared -s -static-libgcc -o file28ec36b35040.dll tmp.def file28ec36b35040.o -L"C:/extsoft/lib/x64" -L"C:/extsoft/lib" -L"D:/biocbuild/bbs-3.15-bioc/R/bin/x64" -lR ; \
"C:/rtools40/mingw64/bin/"g++ -shared -s -static-libgcc -o file28ec36b35040.dll tmp.def file28ec36b35040.o -L"C:/extsoft/lib/x64" -L"C:/extsoft/lib" -L"D:/biocbuild/bbs-3.15-bioc/R/bin/x64" -lR ; \
rm -f tmp.def; \
fi \
fi
Quitting from lines 138-142 (banocc-vignette.Rmd)
Quitting from lines 138-142 (banocc-vignette.Rmd)
Error: processing vignette 'banocc-vignette.Rmd' failed with diagnostics:
invalid connection
--- failed re-building 'banocc-vignette.Rmd'
SUMMARY: processing the following file failed:
'banocc-vignette.Rmd'
Error: Vignette re-building failed.
Execution halted