Robert Scharpf
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/XDE |
| git_branch: master |
| git_last_commit: b2ede35 |
| git_last_commit_date: 2021-10-26 11:51:53 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:59 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the XDE package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/XDE.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2078/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| XDE 2.41.0 (landing page) Robert Scharpf
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: XDE |
| Version: 2.41.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:XDE.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings XDE_2.41.0.tar.gz |
| StartedAt: 2022-03-17 20:36:41 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 20:39:10 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 149.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: XDE.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:XDE.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings XDE_2.41.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/XDE.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'XDE/DESCRIPTION' ... OK * this is package 'XDE' version '2.41.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'XDE' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking include directives in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files for x64 is not available File 'D:/biocbuild/bbs-3.15-bioc/R/library/XDE/libs/x64/XDE.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Found 'printf', possibly from 'printf' (C) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'doRUnit.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'D:/biocbuild/bbs-3.15-bioc/meat/XDE.Rcheck/00check.log' for details.
XDE.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL XDE
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'XDE' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Cholesky.cpp -o Cholesky.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Matrix_v2.cpp -o Matrix_v2.o
Matrix_v2.cpp: In function 'void matrixMult(const std::vector<std::vector<double> >&, const std::vector<double>&, std::vector<double>&)':
Matrix_v2.cpp:244:7: warning: unused variable 'k' [-Wunused-variable]
int k = 1;
^
Matrix_v2.cpp:246:9: warning: unused variable 'j' [-Wunused-variable]
int i,j,r;
^
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Potential_v2.cpp -o Potential_v2.o
Potential_v2.cpp: In function 'double potentialDDeltaStar_HyperInverseWishart(int, const double*, const double*, const double*, const double*, const double*, int, int, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Potential_v2.cpp:308:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < UBlocks.size(); k++) {
~~^~~~~~~~~~~~~~~~
Potential_v2.cpp:310:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < UBlocks[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~
Potential_v2.cpp:316:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < theGene.size(); k++)
~~^~~~~~~~~~~~~~~~
Potential_v2.cpp:321:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < Omega[0].size(); i++)
~~^~~~~~~~~~~~~~~~~
Potential_v2.cpp:322:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++) {
~~^~~~~~~~~~~~~~~~~~
Potential_v2.cpp:328:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < Omega.size(); k++) {
~~^~~~~~~~~~~~~~
Potential_v2.cpp:329:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < oldComponents[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~~~~~~~
Potential_v2.cpp:330:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++) {
~~^~~~~~~~~~~~~~~~~~
Potential_v2.cpp:335:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < Omega[k].size() - oldComponents[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Potential_v2.cpp:336:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++) {
~~^~~~~~~~~~~~~~~~~~
Potential_v2.cpp:345:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < Omega.size(); k++) {
~~^~~~~~~~~~~~~~
Potential_v2.cpp:347:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < theGene[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~
Potential_v2.cpp:356:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < Omega.size(); k++)
~~^~~~~~~~~~~~~~
Potential_v2.cpp:364:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaSub.size(); i++) {
~~^~~~~~~~~~~~~~~~~
Potential_v2.cpp:366:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < OmegaSub[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~~
Potential_v2.cpp:369:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < USub.size(); i++) {
~~^~~~~~~~~~~~~
Potential_v2.cpp:371:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < USub[i].size(); j++)
~~^~~~~~~~~~~~~~~~
Potential_v2.cpp:374:34: warning: statement has no effect [-Wunused-value]
if (theGene[k][i] == 1) include == 1;
~~~~~~~~^~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Random_v2.cpp -o Random_v2.o
Random_v2.cpp: In member function 'int Random::Discrete(const std::vector<double>&)':
Random_v2.cpp:159:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < prob.size(); i++)
~~^~~~~~~~~~~~~
Random_v2.cpp: In member function 'std::vector<std::vector<double> > Random::CorrelationStandardInverseWishartAlternativeParam(int, double)':
Random_v2.cpp:512:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < w.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:515:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < w[i].size(); j++)
~~^~~~~~~~~~~~~
Random_v2.cpp: In member function 'std::vector<std::vector<std::vector<double> > > Random::HyperInverseWishart(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:548:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < D.size(); k++) {
~~^~~~~~~~~~
Random_v2.cpp:551:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < Sigma[k].size(); i++)
~~^~~~~~~~~~~~~~~~~
Random_v2.cpp:557:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < temp.size(); i++)
~~^~~~~~~~~~~~~
Random_v2.cpp:558:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < temp[i].size(); j++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:571:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < D.size(); k++) {
~~^~~~~~~~~~
Random_v2.cpp:585:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DRR.size(); i++) DRR[i].resize(DRR.size());
~~^~~~~~~~~~~~
Random_v2.cpp:586:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DSS.size(); i++) DSS[i].resize(DSS.size());
~~^~~~~~~~~~~~
Random_v2.cpp:587:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DRS.size(); i++) DRS[i].resize(DSS.size());
~~^~~~~~~~~~~~
Random_v2.cpp:588:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DSR.size(); i++) DSR[i].resize(DRR.size());
~~^~~~~~~~~~~~
Random_v2.cpp:590:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DSS.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:591:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < DSS[i].size(); j++)
~~^~~~~~~~~~~~~~~
Random_v2.cpp:594:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DRR.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:595:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < DRR[i].size(); j++)
~~^~~~~~~~~~~~~~~
Random_v2.cpp:598:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DSR.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:599:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < DSR[i].size(); j++) {
~~^~~~~~~~~~~~~~~
Random_v2.cpp:608:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < SigmaSS.size(); i++) {
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:610:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < SigmaSS[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:625:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DRR.size(); i++) {
~~^~~~~~~~~~~~
Random_v2.cpp:627:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < DRR[i].size(); j++)
~~^~~~~~~~~~~~~~~
Random_v2.cpp:675:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < LDSSInverseT.size(); i++) {
~~^~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:677:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < LDSSInverseT[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:693:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DRR.size(); i++) {
~~^~~~~~~~~~~~
Random_v2.cpp:695:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < DSS.size(); j++)
~~^~~~~~~~~~~~
Random_v2.cpp:705:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < mean.size(); i++)
~~^~~~~~~~~~~~~
Random_v2.cpp:706:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < mean[i].size(); j++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:726:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < SigmaSR.size(); i++) {
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:728:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < SigmaSR[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:740:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < SigmaRGivenS.size(); i++)
~~^~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:741:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < SigmaRGivenS[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:746:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < SigmaSS.size(); i++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:747:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < SigmaSS[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:749:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < SigmaRR.size(); i++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:750:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < SigmaRR[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:752:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < SigmaSS.size(); i++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:753:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < SigmaRR.size(); j++) {
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:760:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < temp7.size(); i++)
~~^~~~~~~~~~~~~~
Random_v2.cpp:761:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < temp7[i].size(); j++)
~~^~~~~~~~~~~~~~~~~
Random_v2.cpp: In member function 'std::vector<double> Random::GaussianGraphicalModel(const std::vector<double>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:790:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < UBlocks[k].size(); k++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:807:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:812:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < vec.size(); i++) {
~~^~~~~~~~~~~~
Random_v2.cpp:821:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < Cov.size(); k++) {
~~^~~~~~~~~~~~
Random_v2.cpp:834:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < CovSS.size(); i++) CovSS[i].resize(CovSS.size());
~~^~~~~~~~~~~~~~
Random_v2.cpp:835:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < CovRR.size(); i++) CovRR[i].resize(CovRR.size());
~~^~~~~~~~~~~~~~
Random_v2.cpp:836:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < CovSR.size(); i++) CovSR[i].resize(CovRS.size());
~~^~~~~~~~~~~~~~
Random_v2.cpp:837:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < CovRS.size(); i++) CovRS[i].resize(CovSR.size());
~~^~~~~~~~~~~~~~
Random_v2.cpp:840:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < CovSS.size(); i++)
~~^~~~~~~~~~~~~~
Random_v2.cpp:841:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < CovSS[i].size(); j++)
~~^~~~~~~~~~~~~~~~~
Random_v2.cpp:844:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < CovRR.size(); i++)
~~^~~~~~~~~~~~~~
Random_v2.cpp:845:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < CovRR[i].size(); j++)
~~^~~~~~~~~~~~~~~~~
Random_v2.cpp:848:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < CovSR.size(); i++)
~~^~~~~~~~~~~~~~
Random_v2.cpp:849:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < CovSR[i].size(); j++) {
~~^~~~~~~~~~~~~~~~~
Random_v2.cpp:863:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < CovRGivenS.size(); i++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:864:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < CovRGivenS[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:877:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:884:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < obs.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:889:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < mean.size(); i++)
~~^~~~~~~~~~~~~
Random_v2.cpp:894:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < z.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:899:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < obs.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:901:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < z.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:913:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:918:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < z.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:923:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < z.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:928:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < mean.size(); i++)
~~^~~~~~~~~~~~~
Random_v2.cpp: In member function 'std::vector<std::vector<double> > Random::MatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:948:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < UBlocks.size(); k++) {
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:950:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < UBlocks[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:966:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < U[0].size(); j++) {
~~^~~~~~~~~~~~~
Random_v2.cpp:968:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:973:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:976:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
if (j == U[0].size() - 1) first += z.size();
~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:978:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < z.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:994:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < Omega.size(); k++) {
~~^~~~~~~~~~~~~~
Random_v2.cpp:1007:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaSS.size(); i++) OmegaSS[i].resize(OmegaSS.size());
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1008:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaRR.size(); i++) OmegaRR[i].resize(OmegaRR.size());
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1009:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaSR.size(); i++) OmegaSR[i].resize(OmegaRS.size());
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1010:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaRS.size(); i++) OmegaRS[i].resize(OmegaSR.size());
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1012:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaSS.size(); i++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1013:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < OmegaSS[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1016:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaRR.size(); i++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1017:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < OmegaRR[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1020:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaSR.size(); i++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1021:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < OmegaSR[i].size(); j++) {
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1035:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaRGivenS.size(); i++)
~~^~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1036:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < OmegaRGivenS[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1048:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < U[0].size(); j++) {
~~^~~~~~~~~~~~~
Random_v2.cpp:1050:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:1057:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < obs.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:1062:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < mean.size(); i++)
~~^~~~~~~~~~~~~
Random_v2.cpp:1067:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < z.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:1070:8: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
if (j == U[0].size() - 1) first += z.size();
~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:1072:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < obs.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:1074:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < z.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:1086:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < U[k].size(); j++) {
~~^~~~~~~~~~~~~
Random_v2.cpp:1088:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:1093:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:1096:8: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
if (j == U[k].size() - 1) first += z.size();
~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:1098:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < z.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:1133:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < LT.size(); i++) {
~~^~~~~~~~~~~
Random_v2.cpp:1135:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < LT[i].size(); j++)
~~^~~~~~~~~~~~~~
Random_v2.cpp:1143:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < U.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:1144:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < U[i].size(); j++)
~~^~~~~~~~~~~~~
Random_v2.cpp: In member function 'double Random::PotentialHyperInverseWishart(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<std::vector<std::vector<double> > >&)':
Random_v2.cpp:1183:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < D.size(); k++)
~~^~~~~~~~~~
Random_v2.cpp:1188:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < D.size(); k++)
~~^~~~~~~~~~
Random_v2.cpp:1196:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DSS.size(); i++) DSS[i].resize(DSS.size());
~~^~~~~~~~~~~~
Random_v2.cpp:1197:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < SigmaSS.size(); i++) SigmaSS[i].resize(SigmaSS.size());
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1199:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DSS.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:1200:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < DSS[i].size(); j++) {
~~^~~~~~~~~~~~~~~
Random_v2.cpp: In member function 'double Random::PotentialGaussianGraphicalModel(const std::vector<double>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<double>&)':
Random_v2.cpp:1225:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < UU.size(); i++)
~~^~~~~~~~~~~
Random_v2.cpp:1232:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < UBlocks.size(); k++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1236:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < Cov[0].size(); i++)
~~^~~~~~~~~~~~~~~
Random_v2.cpp:1240:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < Cov.size(); k++) {
~~^~~~~~~~~~~~
Random_v2.cpp:1241:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < oldComponents[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1244:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < Cov[k].size() - oldComponents[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1251:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < Cov.size(); k++) {
~~^~~~~~~~~~~~
Random_v2.cpp:1258:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < Cov.size(); k++) {
~~^~~~~~~~~~~~
Random_v2.cpp:1265:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < CovSub.size(); i++) {
~~^~~~~~~~~~~~~~~
Random_v2.cpp:1267:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < CovSub[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:1271:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < USub.size(); i++)
~~^~~~~~~~~~~~~
Random_v2.cpp: In member function 'double Random::PotentialMatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&)':
Random_v2.cpp:1297:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < XT.size(); i++) {
~~^~~~~~~~~~~
Random_v2.cpp:1299:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < XT[i].size(); j++)
~~^~~~~~~~~~~~~~
Random_v2.cpp:1310:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < temp3.size(); i++)
~~^~~~~~~~~~~~~~
Random_v2.cpp: In member function 'double Random::PotentialMatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<std::vector<double> >&)':
Random_v2.cpp:1335:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < UU.size(); i++)
~~^~~~~~~~~~~
Random_v2.cpp:1336:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < UU[i].size(); j++)
~~^~~~~~~~~~~~~~
Random_v2.cpp:1343:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < UBlocks.size(); k++) {
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1345:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < UBlocks[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1350:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < Omega[0].size(); i++)
~~^~~~~~~~~~~~~~~~~
Random_v2.cpp:1351:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++)
~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:1355:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < Omega.size(); k++) {
~~^~~~~~~~~~~~~~
Random_v2.cpp:1356:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < oldComponents[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1357:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++)
~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:1360:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < Omega[k].size() - oldComponents[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1361:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++)
~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:1380:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < Omega.size(); k++)
~~^~~~~~~~~~~~~~
Random_v2.cpp:1385:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < Omega.size(); k++)
~~^~~~~~~~~~~~~~
Random_v2.cpp:1391:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaSub.size(); i++) {
~~^~~~~~~~~~~~~~~~~
Random_v2.cpp:1393:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < OmegaSub[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1396:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < USub.size(); i++) {
~~^~~~~~~~~~~~~
Random_v2.cpp:1398:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < USub[i].size(); j++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp: In member function 'std::vector<int> Random::Permutation(int)':
Random_v2.cpp:1822:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < perm.size(); k++)
~~^~~~~~~~~~~~~
Random_v2.cpp: In member function 'double Random::lnGamma(double)':
Random_v2.cpp:1847:10: warning: unused variable 'x' [-Wunused-variable]
double x,y,tt,sum;
^
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Rinterface_v2.cpp -o Rinterface_v2.o
In file included from Update_v2.h:8,
from Rinterface_v2.cpp:2:
Random.h:19: warning: "PI" redefined
#define PI 3.14159265
In file included from D:/biocbuild/bbs-3.15-bioc/R/include/R.h:74,
from Rinterface_v2.cpp:1:
D:/biocbuild/bbs-3.15-bioc/R/include/R_ext/Constants.h:36: note: this is the location of the previous definition
#define PI M_PI
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Structure.cpp -o Structure.o
In file included from Structure.cpp:29:
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(const string&, const std::vector<Potential*>&)':
ReportPotential.h:32:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(double*, const std::vector<Potential*>&)':
ReportPotential.h:48:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
ReportPotential.h: In member function 'virtual void ReportPotential::report(const Structure*)':
ReportPotential.h:69:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
ReportPotential.h:78:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
In file included from Structure.cpp:30:
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(const string&, const std::vector<Update*>&)':
ReportAcceptance.h:32:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < update.size(); i++)
~~^~~~~~~~~~~~~~~
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(double*, const std::vector<Update*>&)':
ReportAcceptance.h:48:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < update.size(); i++)
~~^~~~~~~~~~~~~~~
ReportAcceptance.h: In member function 'virtual void ReportAcceptance::report(const Structure*)':
ReportAcceptance.h:67:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < update.size(); i++)
~~^~~~~~~~~~~~~~~
ReportAcceptance.h:76:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < update.size(); i++)
~~^~~~~~~~~~~~~~~
In file included from ReportProbDelta.h:9,
from Structure.cpp:31:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
In file included from Structure.cpp:31:
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(const string&, Structure*, int)':
ReportProbDelta.h:53:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(double*, Structure*, int)':
ReportProbDelta.h:85:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
ReportProbDelta.h: In destructor 'virtual ReportProbDelta::~ReportProbDelta()':
ReportProbDelta.h:96:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
Structure.cpp: In member function 'void Structure::setParameterValues(std::__cxx11::string&)':
Structure.cpp:528:8: warning: unused variable 'c' [-Wunused-variable]
char c;
^
Structure.cpp: In member function 'void Structure::setNumberOfUpdates(std::__cxx11::string&, std::vector<int>&, std::vector<Update*>&) const':
Structure.cpp:1642:8: warning: unused variable 'nRead' [-Wunused-variable]
int nRead = sscanf(var1,"%d",&value);
^~~~~
Structure.cpp:1668:12: warning: unused variable 'nRead' [-Wunused-variable]
int nRead = sscanf(var2,"%le",&value);
^~~~~
Structure.cpp:1579:12: warning: unused variable 'c' [-Wunused-variable]
char c;
^
Structure.cpp: In member function 'ReportDiffexpressed* Structure::setReports(std::__cxx11::string&, int&, std::vector<Potential*>&, std::vector<Update*>&, std::vector<Report*>&, int)':
Structure.cpp:1728:12: warning: unused variable 'c' [-Wunused-variable]
char c;
^
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Update_v2.cpp -o Update_v2.o
Update_v2.cpp: In function 'void updateOmega_HyperInverseWishart(unsigned int*, int*, std::vector<std::vector<std::vector<double> > >&, int, int, const double*, const double*, const double*, const double*, const double*, double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Update_v2.cpp:3919:10: warning: unused variable 'pot' [-Wunused-variable]
double pot = - OmegaGibbs(df,D,oldClique,oldComponents,Q,G,Delta,
^~~
Update_v2.cpp: In function 'void updateDDeltaStar_HyperInverseWishart(unsigned int*, int*, double*, int, int, const int*, const double*, const int*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Update_v2.cpp:3973:10: warning: unused variable 'pot' [-Wunused-variable]
double pot = DeltaStarGibbs(oldClique,oldComponents,Q,G,S,newValues,
^~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Utility_v2.cpp -o Utility_v2.o
Utility_v2.cpp: In function 'double nuGibbs(double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)':
Utility_v2.cpp:221:12: warning: unused variable 'detPrior' [-Wunused-variable]
double detPrior = inverse(var,varInv);
^~~~~~~~
Utility_v2.cpp:228:12: warning: unused variable 'detPosterior' [-Wunused-variable]
double detPosterior = 1.0 /inverse(varInv,var);
^~~~~~~~~~~~
Utility_v2.cpp: In function 'double DeltaGibbs(int, double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)':
Utility_v2.cpp:303:9: warning: unused variable 's' [-Wunused-variable]
int s;
^
Utility_v2.cpp:328:12: warning: unused variable 'detPrior' [-Wunused-variable]
double detPrior = inverse(var,varInv);
^~~~~~~~
Utility_v2.cpp:334:12: warning: unused variable 'detPosterior' [-Wunused-variable]
double detPosterior = 1.0 / inverse(varInv,var);
^~~~~~~~~~~~
Utility_v2.cpp: In function 'void updateMRF1perfect_onedelta(int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, double, Random&)':
Utility_v2.cpp:413:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (gg = 0; gg < neighbour[g].size(); gg++) {
~~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:435:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (gg = 0; gg < neighbour[g].size(); gg++) {
~~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:447:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (ggg = 0; ggg < neighbour[gene].size(); ggg++) {
~~~~^~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp: In function 'double perfectMRF1_onedelta(int*, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, double, unsigned int*, int)':
Utility_v2.cpp:556:8: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
if (b == start.size() - 1) nextSeed = ran.ChangeSeed(dummy);
~~^~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:600:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (gg = 0; gg < neighbour[g].size(); gg++)
~~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp: In function 'void updateMRF2perfect_onedelta(int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, Random&)':
Utility_v2.cpp:635:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < neighbour[g].size(); k++) {
~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp: In function 'double perfectMRF2_onedelta(int*, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, unsigned int*, int)':
Utility_v2.cpp:723:8: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
if (b == start.size() - 1) nextSeed = ran.ChangeSeed(dummy);
~~^~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:760:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < neighbour[g].size(); k++) {
~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:764:6: warning: unused variable 'ngg' [-Wunused-variable]
int ngg = neighbour[gg].size();
^~~
Utility_v2.cpp: In function 'void updateMRF2perfect(int, int, int, int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, double, Random&)':
Utility_v2.cpp:793:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < neighbour[g].size(); k++) {
~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp: In function 'double perfectMRF2(int*, int, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, double, unsigned int*, int)':
Utility_v2.cpp:904:8: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
if (b == start.size() - 1) nextSeed = ran.ChangeSeed(dummy);
~~^~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:949:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < neighbour[g].size(); k++) {
~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:954:8: warning: unused variable 'ngg' [-Wunused-variable]
int ngg = neighbour[gg].size();
^~~
Utility_v2.cpp: In function 'double OmegaGibbs(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, int, int, const double*, const double*, const double*, const double*, const double*, std::vector<std::vector<std::vector<double> > >&, Random&, int)':
Utility_v2.cpp:1027:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (g1 = 0; g1 < DNew[0].size(); g1++)
~~~^~~~~~~~~~~~~~~~
Utility_v2.cpp:1028:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (g2 = 0; g2 < DNew[0][g1].size(); g2++)
~~~^~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1036:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < DNew.size(); k++) {
~~^~~~~~~~~~~~~
Utility_v2.cpp:1041:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (g = 0; g < oldComponents[k].size(); g++) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1047:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (g = 0; g < cliqueSize - oldComponents[k].size(); g++) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1059:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (g1 = 0; g1 < DNew[k].size(); g1++)
~~~^~~~~~~~~~~~~~~~
Utility_v2.cpp:1060:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (g2 = 0; g2 < DNew[k][g1].size(); g2++)
~~~^~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp: In function 'double DeltaStarGibbs(const std::vector<int>&, const std::vector<std::vector<int> >&, int, int, const int*, double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const double*, const std::vector<std::vector<std::vector<double> > >&, Random&, int)':
Utility_v2.cpp:1096:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < OmegaInv.size(); k++)
~~^~~~~~~~~~~~~~~~~
Utility_v2.cpp:1101:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < OmegaSep.size(); k++) {
~~^~~~~~~~~~~~~~~~~
Utility_v2.cpp:1104:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < oldComponents[k].size(); i++) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1107:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < oldComponents[k].size(); j++) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1115:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < OmegaSep.size(); k++) {
~~^~~~~~~~~~~~~~~~~
Utility_v2.cpp:1129:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < Omega.size(); k++) {
~~^~~~~~~~~~~~~~
Utility_v2.cpp:1133:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (gg = 0; gg < oldComponents[k].size(); gg++)
~~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1135:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (gg = oldComponents[k].size(); gg < Omega[k].size(); gg++) {
~~~^~~~~~~~~~~~~~~~~
Utility_v2.cpp:1238:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < OmegaInv.size(); k++) {
~~^~~~~~~~~~~~~~~~~
Utility_v2.cpp:1240:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (r = 0; r < nr[k].size(); r++) {
~~^~~~~~~~~~~~~~
Utility_v2.cpp:1242:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (s = 0; s < nr[k].size(); s++) {
~~^~~~~~~~~~~~~~
Utility_v2.cpp:1258:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < OmegaSepInv.size(); k++) {
~~^~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1260:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (r = 0; r < oldComponents[k].size(); r++) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1262:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (s = 0; s < oldComponents[k].size(); s++) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1409:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (index = 0; index < L.size(); index++)
~~~~~~^~~~~~~~~~
Utility_v2.cpp:1458:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::map<int, double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < VinvSparseReversed.size(); k++)
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1460:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::map<int, double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < VinvSparseReversed.size(); k++) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1463:33: warning: variable 'itextra' set but not used [-Wunused-but-set-variable]
map<int,double>::iterator itextra = VinvSparse[k].end();
^~~~~~~
Utility_v2.cpp:1501:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::map<int, double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (index = 0; index < cholReversed.size(); index++)
~~~~~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1563:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::map<int, double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < chol.size(); k++)
~~^~~~~~~~~~~~~
Utility_v2.cpp:1565:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::map<int, double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < cholReversed.size(); k++) {
~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1600:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::map<int, double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < cholT.size(); k++)
~~^~~~~~~~~~~~~~
Utility_v2.cpp:1602:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::map<int, double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < chol.size(); i++) {
~~^~~~~~~~~~~~~
Utility_v2.cpp:1653:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < mean.size(); i++) {
~~^~~~~~~~~~~~~
Utility_v2.cpp:1693:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < z.size(); k++)
~~^~~~~~~~~~
Utility_v2.cpp:1713:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < sample.size(); i++) {
~~^~~~~~~~~~~~~~~
Utility_v2.cpp:1779:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < sample.size(); i++) {
~~^~~~~~~~~~~~~~~
Utility_v2.cpp: In function 'void inverseTransformOmega(const std::vector<std::vector<std::vector<double> > >&, double*)':
Utility_v2.cpp:1875:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < OmegaTransformed.size(); k++) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1877:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaTransformed[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c diffExpressed_main.cpp -o diffExpressed_main.o
In file included from diffExpressed_main.cpp:16:
Random.h:19: warning: "PI" redefined
#define PI 3.14159265
In file included from D:/biocbuild/bbs-3.15-bioc/R/include/R.h:74,
from diffExpressed_main.cpp:4:
D:/biocbuild/bbs-3.15-bioc/R/include/R_ext/Constants.h:36: note: this is the location of the previous definition
#define PI M_PI
In file included from diffExpressed_main.cpp:22:
PotentialX.h: In destructor 'virtual PotentialX::~PotentialX()':
PotentialX.h:44:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
In file included from diffExpressed_main.cpp:31:
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::~PotentialSigma2()':
PotentialSigma2.h:44:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
In file included from diffExpressed_main.cpp:32:
PotentialPhi.h: In destructor 'virtual PotentialPhi::~PotentialPhi()':
PotentialPhi.h:44:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
In file included from diffExpressed_main.cpp:33:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
In file included from diffExpressed_main.cpp:41:
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::~UpdateDeltaMH()':
UpdateDeltaMH.h:59:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
In file included from UpdateSigma2MH.h:4,
from diffExpressed_main.cpp:43:
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:50:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
UpdateMultiplicativePositive.h:53:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < variable.size(); i++)
~~^~~~~~~~~~~~~~~~~
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:76:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < variable.size(); i++)
~~^~~~~~~~~~~~~~~~~
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:124:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
UpdateMultiplicativePositive.h:127:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < variable1.size(); i++)
~~^~~~~~~~~~~~~~~~~~
UpdateMultiplicativePositive.h:130:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < variable2.size(); i++)
~~^~~~~~~~~~~~~~~~~~
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:159:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < variable1.size(); i++)
~~^~~~~~~~~~~~~~~~~~
UpdateMultiplicativePositive.h:162:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < variable2.size(); i++)
~~^~~~~~~~~~~~~~~~~~
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < variable1.size(); i++)
~~^~~~~~~~~~~~~~~~~~
In file included from diffExpressed_main.cpp:43:
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::~UpdateSigma2MH()':
UpdateSigma2MH.h:61:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
In file included from diffExpressed_main.cpp:44:
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
UpdateTMH.h: In destructor 'virtual UpdateTMH::~UpdateTMH()':
UpdateTMH.h:60:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
In file included from diffExpressed_main.cpp:45:
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
UpdateLMH.h: In destructor 'virtual UpdateLMH::~UpdateLMH()':
UpdateLMH.h:61:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
In file included from diffExpressed_main.cpp:46:
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::~UpdatePhiMH()':
UpdatePhiMH.h:57:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
In file included from diffExpressed_main.cpp:47:
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::~UpdateThetaMH()':
UpdateThetaMH.h:61:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
In file included from diffExpressed_main.cpp:48:
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::~UpdateLambdaMH()':
UpdateLambdaMH.h:59:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
In file included from diffExpressed_main.cpp:143:
PotentialFunction.h: In function 'void xdeLIN_main(int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*)':
PotentialFunction.h:55:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
PotentialFunction.h:55:1: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for (i = 0; i < term.size(); i++)
^~~
PotentialFunction.h:62:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
vector<Update *> update;
^~~~~~
diffExpressed_main.cpp:202:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < update.size(); k++)
~~^~~~~~~~~~~~~~~
diffExpressed_main.cpp:217:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Report*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < report.size(); k++)
~~^~~~~~~~~~~~~~~
diffExpressed_main.cpp:224:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Report*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < report.size(); i++)
~~^~~~~~~~~~~~~~~
diffExpressed_main.cpp:227:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < update.size(); i++)
~~^~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c registerDynamicSymbol.c -o registerDynamicSymbol.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o XDE.dll tmp.def Cholesky.o Matrix_v2.o Potential_v2.o Random_v2.o Rinterface_v2.o Structure.o Update_v2.o Utility_v2.o diffExpressed_main.o registerDynamicSymbol.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-XDE/00new/XDE/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'qqplot' in package 'XDE'
** help
*** installing help indices
converting help for package 'XDE'
finding HTML links ... done
ExpressionSetList-class html
ExpressionSetList-methods html
Parameters-class html
XdeMcmc-class html
XdeParameter-class html
burnin html
calculatePosteriorAvg html
empiricalStart html
expressionSetList html
firstMcmc html
geneCenter html
hyperparameters html
iterations html
lastMcmc html
output html
pairs html
posteriorAvg html
seed html
ssStatistic html
standardizeSamples html
studyCenter html
symbolsInteresting html
thin html
tuning html
updates html
xde html
xmcmc html
xsScores html
zeroNu html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (XDE)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'MetaVolcanoR' is missing or broken
done
XDE.Rcheck/tests/doRUnit.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> ## from xmapcore package
> if( require( "RUnit", quietly=TRUE ) ) {
+ pkg <- "XDE"
+
+ if( Sys.getenv( "RCMDCHECK" ) == "FALSE" ) {
+ path <- file.path( getwd(), "..", "inst", "unitTests" )
+ } else {
+ path <- system.file( package=pkg, "unitTests" )
+ }
+
+ cat( "\nRunning unit tests\n" )
+ print( list( pkg=pkg, getwd=getwd(), pathToUnitTests=path ) )
+ library( package=pkg, character.only=TRUE )
+
+ ##xmap.clear.cache()
+
+ ##Fail on warnings
+ options( warn=2 )
+
+ ## Get the pattern (if there is one?)
+ patt <- Sys.getenv( "RUNITFILEPATTERN" )
+ if( is.null( patt ) || nchar( patt ) == 0 ) {
+ testSuite <- defineTestSuite(name=paste( pkg, "unit testing" ),
+ dirs=path,
+ testFileRegexp=paste( "^test.+", patt, "\\.[rR]$", sep="" ))
+ } else {
+ ##testSuite <- defineTestSuite( name=paste( pkg, "unit testing" ), testFileRegexp=paste( "^runit\\.", patt, "\\.[rR]$", sep="" ), dirs=path )
+ testSuite <- defineTestSuite(name=paste( pkg, "unit testing" ),
+ testFileRegexp=paste( "^test.+", patt, "\\.[rR]$", sep="" ),
+ dirs=path )
+ }
+ tests <- runTestSuite( testSuite )
+
+ pathReport <- file.path( path, "report" )
+
+ cat( "------------------- UNIT TEST SUMMARY ---------------------\n\n" )
+ printTextProtocol( tests, showDetails=FALSE )
+ printTextProtocol( tests, showDetails=FALSE, fileName=paste( pathReport, "Summary.txt", sep="" ) )
+ printTextProtocol( tests, showDetails=TRUE, fileName=paste( pathReport, ".txt", sep="" ) )
+
+ printHTMLProtocol( tests, fileName=paste( pathReport, ".html", sep="" ) )
+
+ tmp <- getErrors( tests )
+ if( tmp$nFail > 0 | tmp$nErr > 0 ){
+ stop( paste( "\n\nunit testing failed (#test failures: ", tmp$nFail, ", #R errors: ", tmp$nErr, ")\n\n", sep=""))
+ }
+ } else {
+ warning( "cannot run unit tests -- package RUnit is not available" )
+ }
Running unit tests
$pkg
[1] "XDE"
$getwd
[1] "D:/biocbuild/bbs-3.15-bioc/meat/XDE.Rcheck/tests"
$pathToUnitTests
[1] "D:/biocbuild/bbs-3.15-bioc/R/library/XDE/unitTests"
Loading required package: Biobase
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Welcome to XDE version 2.41.0
------------------- UNIT TEST SUMMARY ---------------------
RUNIT TEST PROTOCOL -- Thu Mar 17 20:39:02 2022
***********************************************
Number of test functions: 0
Number of errors: 0
Number of failures: 0
1 Test Suite :
XDE unit testing - 0 test functions, 0 errors, 0 failures
>
> proc.time()
user system elapsed
4.20 0.23 4.40
XDE.Rcheck/XDE-Ex.timings
| name | user | system | elapsed | |
| ExpressionSetList-class | 0.01 | 0.00 | 0.01 | |
| Parameters-class | 0 | 0 | 0 | |
| XdeMcmc-class | 0 | 0 | 0 | |
| XdeParameter-class | 0 | 0 | 0 | |
| burnin | 0 | 0 | 0 | |
| empiricalStart | 0.55 | 0.00 | 0.55 | |
| expressionSetList | 0.01 | 0.00 | 0.01 | |
| firstMcmc | 0.19 | 0.00 | 0.19 | |
| geneCenter | 0.03 | 0.00 | 0.03 | |
| hyperparameters | 0.16 | 0.01 | 0.17 | |
| lastMcmc | 0 | 0 | 0 | |
| output | 0.04 | 0.00 | 0.05 | |
| ssStatistic | 0.50 | 0.05 | 0.55 | |
| studyCenter | 0.05 | 0.00 | 0.04 | |
| symbolsInteresting | 0.24 | 0.00 | 0.24 | |
| xde | 0 | 0 | 0 | |
| xmcmc | 0.06 | 0.00 | 0.06 | |
| xsScores | 0.03 | 0.00 | 0.03 | |