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###
### Running command:
###
### rm -rf XDE.buildbin-libdir && mkdir XDE.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=XDE.buildbin-libdir XDE_2.41.0.tar.gz
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* installing *source* package 'XDE' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Cholesky.cpp -o Cholesky.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Matrix_v2.cpp -o Matrix_v2.o
Matrix_v2.cpp: In function 'void matrixMult(const std::vector<std::vector<double> >&, const std::vector<double>&, std::vector<double>&)':
Matrix_v2.cpp:244:7: warning: unused variable 'k' [-Wunused-variable]
int k = 1;
^
Matrix_v2.cpp:246:9: warning: unused variable 'j' [-Wunused-variable]
int i,j,r;
^
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Potential_v2.cpp -o Potential_v2.o
Potential_v2.cpp: In function 'double potentialDDeltaStar_HyperInverseWishart(int, const double*, const double*, const double*, const double*, const double*, int, int, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Potential_v2.cpp:308:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < UBlocks.size(); k++) {
~~^~~~~~~~~~~~~~~~
Potential_v2.cpp:310:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < UBlocks[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~
Potential_v2.cpp:316:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < theGene.size(); k++)
~~^~~~~~~~~~~~~~~~
Potential_v2.cpp:321:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < Omega[0].size(); i++)
~~^~~~~~~~~~~~~~~~~
Potential_v2.cpp:322:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++) {
~~^~~~~~~~~~~~~~~~~~
Potential_v2.cpp:328:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < Omega.size(); k++) {
~~^~~~~~~~~~~~~~
Potential_v2.cpp:329:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < oldComponents[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~~~~~~~
Potential_v2.cpp:330:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++) {
~~^~~~~~~~~~~~~~~~~~
Potential_v2.cpp:335:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < Omega[k].size() - oldComponents[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Potential_v2.cpp:336:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++) {
~~^~~~~~~~~~~~~~~~~~
Potential_v2.cpp:345:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < Omega.size(); k++) {
~~^~~~~~~~~~~~~~
Potential_v2.cpp:347:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < theGene[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~
Potential_v2.cpp:356:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < Omega.size(); k++)
~~^~~~~~~~~~~~~~
Potential_v2.cpp:364:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaSub.size(); i++) {
~~^~~~~~~~~~~~~~~~~
Potential_v2.cpp:366:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < OmegaSub[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~~
Potential_v2.cpp:369:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < USub.size(); i++) {
~~^~~~~~~~~~~~~
Potential_v2.cpp:371:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < USub[i].size(); j++)
~~^~~~~~~~~~~~~~~~
Potential_v2.cpp:374:34: warning: statement has no effect [-Wunused-value]
if (theGene[k][i] == 1) include == 1;
~~~~~~~~^~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Random_v2.cpp -o Random_v2.o
Random_v2.cpp: In member function 'int Random::Discrete(const std::vector<double>&)':
Random_v2.cpp:159:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < prob.size(); i++)
~~^~~~~~~~~~~~~
Random_v2.cpp: In member function 'std::vector<std::vector<double> > Random::CorrelationStandardInverseWishartAlternativeParam(int, double)':
Random_v2.cpp:512:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < w.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:515:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < w[i].size(); j++)
~~^~~~~~~~~~~~~
Random_v2.cpp: In member function 'std::vector<std::vector<std::vector<double> > > Random::HyperInverseWishart(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:548:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < D.size(); k++) {
~~^~~~~~~~~~
Random_v2.cpp:551:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < Sigma[k].size(); i++)
~~^~~~~~~~~~~~~~~~~
Random_v2.cpp:557:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < temp.size(); i++)
~~^~~~~~~~~~~~~
Random_v2.cpp:558:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < temp[i].size(); j++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:571:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < D.size(); k++) {
~~^~~~~~~~~~
Random_v2.cpp:585:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DRR.size(); i++) DRR[i].resize(DRR.size());
~~^~~~~~~~~~~~
Random_v2.cpp:586:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DSS.size(); i++) DSS[i].resize(DSS.size());
~~^~~~~~~~~~~~
Random_v2.cpp:587:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DRS.size(); i++) DRS[i].resize(DSS.size());
~~^~~~~~~~~~~~
Random_v2.cpp:588:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DSR.size(); i++) DSR[i].resize(DRR.size());
~~^~~~~~~~~~~~
Random_v2.cpp:590:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DSS.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:591:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < DSS[i].size(); j++)
~~^~~~~~~~~~~~~~~
Random_v2.cpp:594:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DRR.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:595:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < DRR[i].size(); j++)
~~^~~~~~~~~~~~~~~
Random_v2.cpp:598:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DSR.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:599:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < DSR[i].size(); j++) {
~~^~~~~~~~~~~~~~~
Random_v2.cpp:608:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < SigmaSS.size(); i++) {
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:610:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < SigmaSS[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:625:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DRR.size(); i++) {
~~^~~~~~~~~~~~
Random_v2.cpp:627:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < DRR[i].size(); j++)
~~^~~~~~~~~~~~~~~
Random_v2.cpp:675:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < LDSSInverseT.size(); i++) {
~~^~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:677:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < LDSSInverseT[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:693:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DRR.size(); i++) {
~~^~~~~~~~~~~~
Random_v2.cpp:695:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < DSS.size(); j++)
~~^~~~~~~~~~~~
Random_v2.cpp:705:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < mean.size(); i++)
~~^~~~~~~~~~~~~
Random_v2.cpp:706:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < mean[i].size(); j++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:726:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < SigmaSR.size(); i++) {
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:728:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < SigmaSR[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:740:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < SigmaRGivenS.size(); i++)
~~^~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:741:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < SigmaRGivenS[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:746:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < SigmaSS.size(); i++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:747:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < SigmaSS[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:749:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < SigmaRR.size(); i++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:750:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < SigmaRR[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:752:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < SigmaSS.size(); i++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:753:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < SigmaRR.size(); j++) {
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:760:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < temp7.size(); i++)
~~^~~~~~~~~~~~~~
Random_v2.cpp:761:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < temp7[i].size(); j++)
~~^~~~~~~~~~~~~~~~~
Random_v2.cpp: In member function 'std::vector<double> Random::GaussianGraphicalModel(const std::vector<double>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:790:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < UBlocks[k].size(); k++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:807:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:812:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < vec.size(); i++) {
~~^~~~~~~~~~~~
Random_v2.cpp:821:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < Cov.size(); k++) {
~~^~~~~~~~~~~~
Random_v2.cpp:834:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < CovSS.size(); i++) CovSS[i].resize(CovSS.size());
~~^~~~~~~~~~~~~~
Random_v2.cpp:835:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < CovRR.size(); i++) CovRR[i].resize(CovRR.size());
~~^~~~~~~~~~~~~~
Random_v2.cpp:836:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < CovSR.size(); i++) CovSR[i].resize(CovRS.size());
~~^~~~~~~~~~~~~~
Random_v2.cpp:837:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < CovRS.size(); i++) CovRS[i].resize(CovSR.size());
~~^~~~~~~~~~~~~~
Random_v2.cpp:840:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < CovSS.size(); i++)
~~^~~~~~~~~~~~~~
Random_v2.cpp:841:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < CovSS[i].size(); j++)
~~^~~~~~~~~~~~~~~~~
Random_v2.cpp:844:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < CovRR.size(); i++)
~~^~~~~~~~~~~~~~
Random_v2.cpp:845:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < CovRR[i].size(); j++)
~~^~~~~~~~~~~~~~~~~
Random_v2.cpp:848:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < CovSR.size(); i++)
~~^~~~~~~~~~~~~~
Random_v2.cpp:849:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < CovSR[i].size(); j++) {
~~^~~~~~~~~~~~~~~~~
Random_v2.cpp:863:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < CovRGivenS.size(); i++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:864:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < CovRGivenS[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:877:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:884:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < obs.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:889:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < mean.size(); i++)
~~^~~~~~~~~~~~~
Random_v2.cpp:894:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < z.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:899:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < obs.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:901:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < z.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:913:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:918:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < z.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:923:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < z.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:928:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < mean.size(); i++)
~~^~~~~~~~~~~~~
Random_v2.cpp: In member function 'std::vector<std::vector<double> > Random::MatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:948:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < UBlocks.size(); k++) {
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:950:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < UBlocks[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:966:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < U[0].size(); j++) {
~~^~~~~~~~~~~~~
Random_v2.cpp:968:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:973:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:976:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
if (j == U[0].size() - 1) first += z.size();
~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:978:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < z.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:994:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < Omega.size(); k++) {
~~^~~~~~~~~~~~~~
Random_v2.cpp:1007:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaSS.size(); i++) OmegaSS[i].resize(OmegaSS.size());
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1008:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaRR.size(); i++) OmegaRR[i].resize(OmegaRR.size());
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1009:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaSR.size(); i++) OmegaSR[i].resize(OmegaRS.size());
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1010:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaRS.size(); i++) OmegaRS[i].resize(OmegaSR.size());
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1012:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaSS.size(); i++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1013:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < OmegaSS[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1016:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaRR.size(); i++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1017:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < OmegaRR[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1020:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaSR.size(); i++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1021:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < OmegaSR[i].size(); j++) {
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1035:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaRGivenS.size(); i++)
~~^~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1036:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < OmegaRGivenS[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1048:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < U[0].size(); j++) {
~~^~~~~~~~~~~~~
Random_v2.cpp:1050:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:1057:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < obs.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:1062:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < mean.size(); i++)
~~^~~~~~~~~~~~~
Random_v2.cpp:1067:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < z.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:1070:8: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
if (j == U[0].size() - 1) first += z.size();
~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:1072:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < obs.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:1074:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < z.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:1086:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < U[k].size(); j++) {
~~^~~~~~~~~~~~~
Random_v2.cpp:1088:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:1093:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:1096:8: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
if (j == U[k].size() - 1) first += z.size();
~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:1098:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < z.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:1133:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < LT.size(); i++) {
~~^~~~~~~~~~~
Random_v2.cpp:1135:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < LT[i].size(); j++)
~~^~~~~~~~~~~~~~
Random_v2.cpp:1143:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < U.size(); i++)
~~^~~~~~~~~~
Random_v2.cpp:1144:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < U[i].size(); j++)
~~^~~~~~~~~~~~~
Random_v2.cpp: In member function 'double Random::PotentialHyperInverseWishart(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<std::vector<std::vector<double> > >&)':
Random_v2.cpp:1183:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < D.size(); k++)
~~^~~~~~~~~~
Random_v2.cpp:1188:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < D.size(); k++)
~~^~~~~~~~~~
Random_v2.cpp:1196:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DSS.size(); i++) DSS[i].resize(DSS.size());
~~^~~~~~~~~~~~
Random_v2.cpp:1197:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < SigmaSS.size(); i++) SigmaSS[i].resize(SigmaSS.size());
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1199:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < DSS.size(); i++)
~~^~~~~~~~~~~~
Random_v2.cpp:1200:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < DSS[i].size(); j++) {
~~^~~~~~~~~~~~~~~
Random_v2.cpp: In member function 'double Random::PotentialGaussianGraphicalModel(const std::vector<double>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<double>&)':
Random_v2.cpp:1225:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < UU.size(); i++)
~~^~~~~~~~~~~
Random_v2.cpp:1232:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < UBlocks.size(); k++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1236:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < Cov[0].size(); i++)
~~^~~~~~~~~~~~~~~
Random_v2.cpp:1240:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < Cov.size(); k++) {
~~^~~~~~~~~~~~
Random_v2.cpp:1241:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < oldComponents[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1244:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < Cov[k].size() - oldComponents[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1251:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < Cov.size(); k++) {
~~^~~~~~~~~~~~
Random_v2.cpp:1258:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < Cov.size(); k++) {
~~^~~~~~~~~~~~
Random_v2.cpp:1265:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < CovSub.size(); i++) {
~~^~~~~~~~~~~~~~~
Random_v2.cpp:1267:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < CovSub[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:1271:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < USub.size(); i++)
~~^~~~~~~~~~~~~
Random_v2.cpp: In member function 'double Random::PotentialMatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&)':
Random_v2.cpp:1297:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < XT.size(); i++) {
~~^~~~~~~~~~~
Random_v2.cpp:1299:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < XT[i].size(); j++)
~~^~~~~~~~~~~~~~
Random_v2.cpp:1310:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < temp3.size(); i++)
~~^~~~~~~~~~~~~~
Random_v2.cpp: In member function 'double Random::PotentialMatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<std::vector<double> >&)':
Random_v2.cpp:1335:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < UU.size(); i++)
~~^~~~~~~~~~~
Random_v2.cpp:1336:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < UU[i].size(); j++)
~~^~~~~~~~~~~~~~
Random_v2.cpp:1343:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < UBlocks.size(); k++) {
~~^~~~~~~~~~~~~~~~
Random_v2.cpp:1345:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < UBlocks[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1350:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < Omega[0].size(); i++)
~~^~~~~~~~~~~~~~~~~
Random_v2.cpp:1351:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++)
~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:1355:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < Omega.size(); k++) {
~~^~~~~~~~~~~~~~
Random_v2.cpp:1356:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < oldComponents[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1357:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++)
~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:1360:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < Omega[k].size() - oldComponents[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1361:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++)
~~^~~~~~~~~~~~~~~~~~
Random_v2.cpp:1380:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < Omega.size(); k++)
~~^~~~~~~~~~~~~~
Random_v2.cpp:1385:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < Omega.size(); k++)
~~^~~~~~~~~~~~~~
Random_v2.cpp:1391:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaSub.size(); i++) {
~~^~~~~~~~~~~~~~~~~
Random_v2.cpp:1393:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < OmegaSub[i].size(); j++)
~~^~~~~~~~~~~~~~~~~~~~
Random_v2.cpp:1396:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < USub.size(); i++) {
~~^~~~~~~~~~~~~
Random_v2.cpp:1398:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < USub[i].size(); j++)
~~^~~~~~~~~~~~~~~~
Random_v2.cpp: In member function 'std::vector<int> Random::Permutation(int)':
Random_v2.cpp:1822:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < perm.size(); k++)
~~^~~~~~~~~~~~~
Random_v2.cpp: In member function 'double Random::lnGamma(double)':
Random_v2.cpp:1847:10: warning: unused variable 'x' [-Wunused-variable]
double x,y,tt,sum;
^
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Rinterface_v2.cpp -o Rinterface_v2.o
In file included from Update_v2.h:8,
from Rinterface_v2.cpp:2:
Random.h:19: warning: "PI" redefined
#define PI 3.14159265
In file included from D:/biocbuild/bbs-3.15-bioc/R/include/R.h:74,
from Rinterface_v2.cpp:1:
D:/biocbuild/bbs-3.15-bioc/R/include/R_ext/Constants.h:36: note: this is the location of the previous definition
#define PI M_PI
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Structure.cpp -o Structure.o
In file included from Structure.cpp:29:
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(const string&, const std::vector<Potential*>&)':
ReportPotential.h:32:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(double*, const std::vector<Potential*>&)':
ReportPotential.h:48:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
ReportPotential.h: In member function 'virtual void ReportPotential::report(const Structure*)':
ReportPotential.h:69:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
ReportPotential.h:78:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
In file included from Structure.cpp:30:
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(const string&, const std::vector<Update*>&)':
ReportAcceptance.h:32:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < update.size(); i++)
~~^~~~~~~~~~~~~~~
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(double*, const std::vector<Update*>&)':
ReportAcceptance.h:48:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < update.size(); i++)
~~^~~~~~~~~~~~~~~
ReportAcceptance.h: In member function 'virtual void ReportAcceptance::report(const Structure*)':
ReportAcceptance.h:67:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < update.size(); i++)
~~^~~~~~~~~~~~~~~
ReportAcceptance.h:76:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < update.size(); i++)
~~^~~~~~~~~~~~~~~
In file included from ReportProbDelta.h:9,
from Structure.cpp:31:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
In file included from Structure.cpp:31:
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(const string&, Structure*, int)':
ReportProbDelta.h:53:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(double*, Structure*, int)':
ReportProbDelta.h:85:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
ReportProbDelta.h: In destructor 'virtual ReportProbDelta::~ReportProbDelta()':
ReportProbDelta.h:96:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
Structure.cpp: In member function 'void Structure::setParameterValues(std::__cxx11::string&)':
Structure.cpp:528:8: warning: unused variable 'c' [-Wunused-variable]
char c;
^
Structure.cpp: In member function 'void Structure::setNumberOfUpdates(std::__cxx11::string&, std::vector<int>&, std::vector<Update*>&) const':
Structure.cpp:1642:8: warning: unused variable 'nRead' [-Wunused-variable]
int nRead = sscanf(var1,"%d",&value);
^~~~~
Structure.cpp:1668:12: warning: unused variable 'nRead' [-Wunused-variable]
int nRead = sscanf(var2,"%le",&value);
^~~~~
Structure.cpp:1579:12: warning: unused variable 'c' [-Wunused-variable]
char c;
^
Structure.cpp: In member function 'ReportDiffexpressed* Structure::setReports(std::__cxx11::string&, int&, std::vector<Potential*>&, std::vector<Update*>&, std::vector<Report*>&, int)':
Structure.cpp:1728:12: warning: unused variable 'c' [-Wunused-variable]
char c;
^
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Update_v2.cpp -o Update_v2.o
Update_v2.cpp: In function 'void updateOmega_HyperInverseWishart(unsigned int*, int*, std::vector<std::vector<std::vector<double> > >&, int, int, const double*, const double*, const double*, const double*, const double*, double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Update_v2.cpp:3919:10: warning: unused variable 'pot' [-Wunused-variable]
double pot = - OmegaGibbs(df,D,oldClique,oldComponents,Q,G,Delta,
^~~
Update_v2.cpp: In function 'void updateDDeltaStar_HyperInverseWishart(unsigned int*, int*, double*, int, int, const int*, const double*, const int*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Update_v2.cpp:3973:10: warning: unused variable 'pot' [-Wunused-variable]
double pot = DeltaStarGibbs(oldClique,oldComponents,Q,G,S,newValues,
^~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Utility_v2.cpp -o Utility_v2.o
Utility_v2.cpp: In function 'double nuGibbs(double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)':
Utility_v2.cpp:221:12: warning: unused variable 'detPrior' [-Wunused-variable]
double detPrior = inverse(var,varInv);
^~~~~~~~
Utility_v2.cpp:228:12: warning: unused variable 'detPosterior' [-Wunused-variable]
double detPosterior = 1.0 /inverse(varInv,var);
^~~~~~~~~~~~
Utility_v2.cpp: In function 'double DeltaGibbs(int, double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)':
Utility_v2.cpp:303:9: warning: unused variable 's' [-Wunused-variable]
int s;
^
Utility_v2.cpp:328:12: warning: unused variable 'detPrior' [-Wunused-variable]
double detPrior = inverse(var,varInv);
^~~~~~~~
Utility_v2.cpp:334:12: warning: unused variable 'detPosterior' [-Wunused-variable]
double detPosterior = 1.0 / inverse(varInv,var);
^~~~~~~~~~~~
Utility_v2.cpp: In function 'void updateMRF1perfect_onedelta(int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, double, Random&)':
Utility_v2.cpp:413:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (gg = 0; gg < neighbour[g].size(); gg++) {
~~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:435:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (gg = 0; gg < neighbour[g].size(); gg++) {
~~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:447:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (ggg = 0; ggg < neighbour[gene].size(); ggg++) {
~~~~^~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp: In function 'double perfectMRF1_onedelta(int*, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, double, unsigned int*, int)':
Utility_v2.cpp:556:8: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
if (b == start.size() - 1) nextSeed = ran.ChangeSeed(dummy);
~~^~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:600:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (gg = 0; gg < neighbour[g].size(); gg++)
~~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp: In function 'void updateMRF2perfect_onedelta(int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, Random&)':
Utility_v2.cpp:635:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < neighbour[g].size(); k++) {
~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp: In function 'double perfectMRF2_onedelta(int*, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, unsigned int*, int)':
Utility_v2.cpp:723:8: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
if (b == start.size() - 1) nextSeed = ran.ChangeSeed(dummy);
~~^~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:760:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < neighbour[g].size(); k++) {
~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:764:6: warning: unused variable 'ngg' [-Wunused-variable]
int ngg = neighbour[gg].size();
^~~
Utility_v2.cpp: In function 'void updateMRF2perfect(int, int, int, int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, double, Random&)':
Utility_v2.cpp:793:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < neighbour[g].size(); k++) {
~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp: In function 'double perfectMRF2(int*, int, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, double, unsigned int*, int)':
Utility_v2.cpp:904:8: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
if (b == start.size() - 1) nextSeed = ran.ChangeSeed(dummy);
~~^~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:949:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < neighbour[g].size(); k++) {
~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:954:8: warning: unused variable 'ngg' [-Wunused-variable]
int ngg = neighbour[gg].size();
^~~
Utility_v2.cpp: In function 'double OmegaGibbs(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, int, int, const double*, const double*, const double*, const double*, const double*, std::vector<std::vector<std::vector<double> > >&, Random&, int)':
Utility_v2.cpp:1027:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (g1 = 0; g1 < DNew[0].size(); g1++)
~~~^~~~~~~~~~~~~~~~
Utility_v2.cpp:1028:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (g2 = 0; g2 < DNew[0][g1].size(); g2++)
~~~^~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1036:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 1; k < DNew.size(); k++) {
~~^~~~~~~~~~~~~
Utility_v2.cpp:1041:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (g = 0; g < oldComponents[k].size(); g++) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1047:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (g = 0; g < cliqueSize - oldComponents[k].size(); g++) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1059:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (g1 = 0; g1 < DNew[k].size(); g1++)
~~~^~~~~~~~~~~~~~~~
Utility_v2.cpp:1060:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (g2 = 0; g2 < DNew[k][g1].size(); g2++)
~~~^~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp: In function 'double DeltaStarGibbs(const std::vector<int>&, const std::vector<std::vector<int> >&, int, int, const int*, double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const double*, const std::vector<std::vector<std::vector<double> > >&, Random&, int)':
Utility_v2.cpp:1096:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < OmegaInv.size(); k++)
~~^~~~~~~~~~~~~~~~~
Utility_v2.cpp:1101:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < OmegaSep.size(); k++) {
~~^~~~~~~~~~~~~~~~~
Utility_v2.cpp:1104:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < oldComponents[k].size(); i++) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1107:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (j = 0; j < oldComponents[k].size(); j++) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1115:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < OmegaSep.size(); k++) {
~~^~~~~~~~~~~~~~~~~
Utility_v2.cpp:1129:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < Omega.size(); k++) {
~~^~~~~~~~~~~~~~
Utility_v2.cpp:1133:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (gg = 0; gg < oldComponents[k].size(); gg++)
~~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1135:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (gg = oldComponents[k].size(); gg < Omega[k].size(); gg++) {
~~~^~~~~~~~~~~~~~~~~
Utility_v2.cpp:1238:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < OmegaInv.size(); k++) {
~~^~~~~~~~~~~~~~~~~
Utility_v2.cpp:1240:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (r = 0; r < nr[k].size(); r++) {
~~^~~~~~~~~~~~~~
Utility_v2.cpp:1242:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (s = 0; s < nr[k].size(); s++) {
~~^~~~~~~~~~~~~~
Utility_v2.cpp:1258:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < OmegaSepInv.size(); k++) {
~~^~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1260:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (r = 0; r < oldComponents[k].size(); r++) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1262:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (s = 0; s < oldComponents[k].size(); s++) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1409:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (index = 0; index < L.size(); index++)
~~~~~~^~~~~~~~~~
Utility_v2.cpp:1458:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::map<int, double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < VinvSparseReversed.size(); k++)
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1460:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::map<int, double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < VinvSparseReversed.size(); k++) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1463:33: warning: variable 'itextra' set but not used [-Wunused-but-set-variable]
map<int,double>::iterator itextra = VinvSparse[k].end();
^~~~~~~
Utility_v2.cpp:1501:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::map<int, double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (index = 0; index < cholReversed.size(); index++)
~~~~~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1563:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::map<int, double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < chol.size(); k++)
~~^~~~~~~~~~~~~
Utility_v2.cpp:1565:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::map<int, double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < cholReversed.size(); k++) {
~~^~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1600:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::map<int, double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < cholT.size(); k++)
~~^~~~~~~~~~~~~~
Utility_v2.cpp:1602:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::map<int, double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < chol.size(); i++) {
~~^~~~~~~~~~~~~
Utility_v2.cpp:1653:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < mean.size(); i++) {
~~^~~~~~~~~~~~~
Utility_v2.cpp:1693:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < z.size(); k++)
~~^~~~~~~~~~
Utility_v2.cpp:1713:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < sample.size(); i++) {
~~^~~~~~~~~~~~~~~
Utility_v2.cpp:1779:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < sample.size(); i++) {
~~^~~~~~~~~~~~~~~
Utility_v2.cpp: In function 'void inverseTransformOmega(const std::vector<std::vector<std::vector<double> > >&, double*)':
Utility_v2.cpp:1875:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::vector<double> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < OmegaTransformed.size(); k++) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~
Utility_v2.cpp:1877:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < OmegaTransformed[k].size(); i++)
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c diffExpressed_main.cpp -o diffExpressed_main.o
In file included from diffExpressed_main.cpp:16:
Random.h:19: warning: "PI" redefined
#define PI 3.14159265
In file included from D:/biocbuild/bbs-3.15-bioc/R/include/R.h:74,
from diffExpressed_main.cpp:4:
D:/biocbuild/bbs-3.15-bioc/R/include/R_ext/Constants.h:36: note: this is the location of the previous definition
#define PI M_PI
In file included from diffExpressed_main.cpp:22:
PotentialX.h: In destructor 'virtual PotentialX::~PotentialX()':
PotentialX.h:44:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
In file included from diffExpressed_main.cpp:31:
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::~PotentialSigma2()':
PotentialSigma2.h:44:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
In file included from diffExpressed_main.cpp:32:
PotentialPhi.h: In destructor 'virtual PotentialPhi::~PotentialPhi()':
PotentialPhi.h:44:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
In file included from diffExpressed_main.cpp:33:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()':
PotentialSum.h:41:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
In file included from diffExpressed_main.cpp:41:
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::~UpdateDeltaMH()':
UpdateDeltaMH.h:59:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
In file included from UpdateSigma2MH.h:4,
from diffExpressed_main.cpp:43:
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:50:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
UpdateMultiplicativePositive.h:53:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < variable.size(); i++)
~~^~~~~~~~~~~~~~~~~
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:76:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < variable.size(); i++)
~~^~~~~~~~~~~~~~~~~
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:124:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < model.size(); i++)
~~^~~~~~~~~~~~~~
UpdateMultiplicativePositive.h:127:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < variable1.size(); i++)
~~^~~~~~~~~~~~~~~~~~
UpdateMultiplicativePositive.h:130:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < variable2.size(); i++)
~~^~~~~~~~~~~~~~~~~~
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:159:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < variable1.size(); i++)
~~^~~~~~~~~~~~~~~~~~
UpdateMultiplicativePositive.h:162:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < variable2.size(); i++)
~~^~~~~~~~~~~~~~~~~~
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < variable1.size(); i++)
~~^~~~~~~~~~~~~~~~~~
In file included from diffExpressed_main.cpp:43:
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::~UpdateSigma2MH()':
UpdateSigma2MH.h:61:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
In file included from diffExpressed_main.cpp:44:
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
UpdateTMH.h: In destructor 'virtual UpdateTMH::~UpdateTMH()':
UpdateTMH.h:60:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
In file included from diffExpressed_main.cpp:45:
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
UpdateLMH.h: In destructor 'virtual UpdateLMH::~UpdateLMH()':
UpdateLMH.h:61:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
In file included from diffExpressed_main.cpp:46:
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::~UpdatePhiMH()':
UpdatePhiMH.h:57:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
In file included from diffExpressed_main.cpp:47:
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::~UpdateThetaMH()':
UpdateThetaMH.h:61:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
In file included from diffExpressed_main.cpp:48:
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::~UpdateLambdaMH()':
UpdateLambdaMH.h:59:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < up.size(); i++)
~~^~~~~~~~~~~
In file included from diffExpressed_main.cpp:143:
PotentialFunction.h: In function 'void xdeLIN_main(int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*)':
PotentialFunction.h:55:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Potential*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < term.size(); i++)
~~^~~~~~~~~~~~~
PotentialFunction.h:55:1: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for (i = 0; i < term.size(); i++)
^~~
PotentialFunction.h:62:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
vector<Update *> update;
^~~~~~
diffExpressed_main.cpp:202:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < update.size(); k++)
~~^~~~~~~~~~~~~~~
diffExpressed_main.cpp:217:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Report*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (k = 0; k < report.size(); k++)
~~^~~~~~~~~~~~~~~
diffExpressed_main.cpp:224:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Report*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < report.size(); i++)
~~^~~~~~~~~~~~~~~
diffExpressed_main.cpp:227:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Update*>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for (i = 0; i < update.size(); i++)
~~^~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c registerDynamicSymbol.c -o registerDynamicSymbol.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o XDE.dll tmp.def Cholesky.o Matrix_v2.o Potential_v2.o Random_v2.o Rinterface_v2.o Structure.o Update_v2.o Utility_v2.o diffExpressed_main.o registerDynamicSymbol.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/XDE.buildbin-libdir/00LOCK-XDE/00new/XDE/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'qqplot' in package 'XDE'
** help
*** installing help indices
converting help for package 'XDE'
finding HTML links ... done
ExpressionSetList-class html
ExpressionSetList-methods html
Parameters-class html
XdeMcmc-class html
XdeParameter-class html
burnin html
calculatePosteriorAvg html
empiricalStart html
expressionSetList html
firstMcmc html
geneCenter html
hyperparameters html
iterations html
lastMcmc html
output html
pairs html
posteriorAvg html
seed html
ssStatistic html
standardizeSamples html
studyCenter html
symbolsInteresting html
thin html
tuning html
updates html
xde html
xmcmc html
xsScores html
zeroNu html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'XDE' as XDE_2.41.0.zip
* DONE (XDE)
