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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL PFP
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'PFP' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PFP'
    finding HTML links ... done
    PFP-class                               html  
    PFP                                     html  
    PFPRefnet-class                         html  
    PFPRefnet_hsa                           html  
    PFPRefnet_mmu                           html  
    PFP_score-methods                       html  
    PFP_test1                               html  
    PFP_test2                               html  
    calc_PFP_score                          html  
    data_std                                html  
    gene_list_hsa                           html  
    genes_score-methods                     html  
    get_PFPRefnet                           html  
    get_asso_net                            html  
    get_bg_related_kegg                     html  
    get_exp_cor_edges                       html  
    get_pathway_info                        html  
    group-methods                           html  
    kegg_download                           html  
    net_info-methods                        html  
    net_names-methods                       html  
    network-methods                         html  
    pathway_info                            html  
    pathway_info_hsa                        html  
    pathways_score-methods                  html  
    plot_PFP-methods                        html  
    plot_PFPlist                            html  
    rank_PFP-methods                        html  
    refnet_info-methods                     html  
    refnet_names-methods                    html  
    result_PFP-methods                      html  
    show_PFP-methods                        html  
    show_net-methods                        html  
    stats_test-methods                      html  
    sub_PFP-methods                         html  
    subnet-methods                          html  
    trans_edges_id                          html  
    trans_graph2PFPRefnet                   html  
    finding level-2 HTML links ... done

    trans_xml2graph                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PFP)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'methylCC' is missing or broken
 done