Benjamin Haibe-Kains
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/PDATK |
| git_branch: master |
| git_last_commit: ba627bd |
| git_last_commit_date: 2021-12-16 15:32:36 -0400 (Thu, 16 Dec 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:16 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the PDATK package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PDATK.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1396/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PDATK 1.3.1 (landing page) Benjamin Haibe-Kains
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: PDATK |
| Version: 1.3.1 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:PDATK.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings PDATK_1.3.1.tar.gz |
| StartedAt: 2022-03-17 19:50:03 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 19:55:06 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 302.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PDATK.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:PDATK.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings PDATK_1.3.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/PDATK.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PDATK/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PDATK' version '1.3.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PDATK' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.calculateMSMthresholds: no visible binding for global variable
'funContext'
.plotNetwork: no visible global function definition for 'legend'
NCSModel: no visible binding for global variable 'metric'
NCSModel: no visible binding for global variable 'comparison'
NCSModel: no visible binding for global variable 'centroid_K'
NCSModel: no visible binding for global variable 'assay_K'
NetworkCommunitySearchModel: no visible binding for global variable
'metric'
NetworkCommunitySearchModel: no visible binding for global variable
'comparison'
NetworkCommunitySearchModel: no visible binding for global variable
'centroid_K'
NetworkCommunitySearchModel: no visible binding for global variable
'assay_K'
predictClasses,ConsensusMetaclusteringModel-ANY: no visible global
function definition for '.error'
predictClasses,NCSModel-ANY: no visible binding for global variable
'centroid_cohort'
predictClasses,NCSModel-ANY: no visible binding for global variable
'centroid_K'
predictClasses,NCSModel-ANY: no visible binding for global variable
'assay_cohort'
predictClasses,NCSModel-ANY: no visible binding for global variable
'assay_K'
predictClasses,NCSModel-ANY: no visible binding for global variable
'tmp'
predictClasses,NCSModel-ANY: no visible binding for global variable
'cluster_label'
rankFeatures,MultiAssayExperiment: no visible binding for global
variable 'feature'
rankFeatures,MultiAssayExperiment: no visible binding for global
variable 'missignAssays'
rankFeatures,MultiAssayExperiment: no visible binding for global
variable 'feature_score'
rankFeatures,MultiAssayExperiment: no visible binding for global
variable 'feature_rank'
trainModel,ConsensusMetaclusteringModel: no visible global function
definition for 'pdf'
trainModel,ConsensusMetaclusteringModel: no visible global function
definition for 'dev.off'
trainModel,NCSModel: no visible binding for global variable
'ingroup_proportion'
trainModel,NCSModel: no visible binding for global variable
'cor_threshold'
Undefined global functions or variables:
.error assay_K assay_cohort centroid_K centroid_cohort cluster_label
comparison cor_threshold dev.off feature feature_rank feature_score
funContext ingroup_proportion legend metric missignAssays pdf tmp
Consider adding
importFrom("grDevices", "dev.off", "pdf")
importFrom("graphics", "legend")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'D:/biocbuild/bbs-3.15-bioc/meat/PDATK.Rcheck/00check.log'
for details.
PDATK.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL PDATK
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'PDATK' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'PDATK'
finding HTML links ... done
CSPC_MAE html
ClinicalModel-class html
ClinicalModel html
CohortList-class html
CohortList html
ConsensusMetaclusteringModel-class html
ConsensusMetaclusteringModel html
CoxModel-class html
CoxModel html
GeneFuModel-class html
GeneFuModel html
ModelComparison-class html
ModelComparison html
NCSModel-class html
NetworkCommunitySearchModel html
PCOSP-class html
PCOSP html
PCOSP_or_ClinicalModel-class html
PCOSP_or_RLS_or_RGA-class html
RGAModel-class html
RLSModel-class html
RandomGeneAssignmentModel html
RandomLabelShufflingModel html
S4Model-class html
SurvivalExperiment-class html
SurvivalExperiment html
SurvivalModel-class html
SurvivalModel html
assignColDataColumn html
assignSubtypes-CohortList-list-method html
assignSubtypes-SurvivalExperiment-data.frame-method
html
assignSubtypes html
barPlotModelComparison-ClinicalModel-PCOSP_or_RLS_or_RGA-method
html
barPlotModelComparison html
birnbaum html
chen html
cohortSubtypeDFs html
compareModels-ModelComparison-SurvivalModel-method
html
compareModels-SurvivalModel-SurvivalModel-method
html
compareModels html
densityPlotModelComparison-PCOSP_or_RLS_or_RGA-PCOSP_or_RLS_or_RGA-method
html
densityPlotModelComparison html
dot-findAllCohortPairs html
dot-randomSampleIndex html
dropNotCensored-CohortList-method html
dropNotCensored-SurvivalExperiment-method
html
dropNotCensored html
existingClassifierData html
findCommonGenes-CohortList-method html
findCommonGenes-MultiAssayExperiment-method
html
findCommonGenes html
findCommonSamples-CohortList-method html
findCommonSamples html
forestPlot-ModelComparison-method html
forestPlot-PCOSP_or_ClinicalModel-method
html
forestPlot html
getModelSeed-SurvivalModel-method html
getModelSeed html
getTopFeatures-MultiAssayExperiment-method
html
getTopFeatures-PCOSP-method html
getTopFeatures-SummarizedExperiment-method
html
getTopFeatures html
haiderSigScores html
hasColDataColumns html
merge-SurvivalExperiment-SurvivalExperiment-method
html
modelParams-S4Model-method html
modelParams-set-S4Model-List_or_list_or_NULL-method
html
modelParams-set html
modelParams html
models-S4Model-method html
models-SurvivalModel-method html
models-set-S4Model-List_or_list_or_NULL-method
html
models-set-SurvivalModel-SimpleList-method
html
models-set html
models html
normalize-DFrame-method html
normalize-MultiAssayExperiment-method html
normalize-SummarizedExperiment-method html
normalize-data.frame_or_matrix-method html
normalsMAE html
optimalKMinimizeAmbiguity html
plotNetworkGraph-NCSModel-method html
plotNetworkGraph html
plotROC-PCOSP-method html
plotROC html
plotSurvivalCurves-CoxModel-method html
plotSurvivalCurves html
predictClasses-CohortList-ClinicalModel-method
html
predictClasses-CohortList-GeneFuModel-method
html
predictClasses-CohortList-PCOSP_or_RLS_or_RGA-method
html
predictClasses-ConsensusMetaclusteringModel-ANY-method
html
predictClasses-NCSModel-ANY-method html
predictClasses-SurvivalExperiment-ClinicalModel-method
html
predictClasses-SurvivalExperiment-GeneFuModel-method
html
predictClasses-SurvivalExperiment-PCOSP_or_RLS_or_RGA-method
html
predictClasses html
preprocessCaret html
rankFeatures-MultiAssayExperiment-method
html
rankFeatures-SummarizedExperiment-method
html
rankFeatures html
removeColDataFactorColumns html
removeFactorColumns html
renameColDataColumns html
renameColumns html
runGSEA-PCOSP-data.frame-method html
runGSEA html
sampleClinicalModel html
sampleCohortList html
sampleICGCmicro html
samplePCOSPmodel html
samplePCOSPpredList html
samplePCSIsurvExp html
sampleRGAmodel html
sampleRLSmodel html
sampleTrainedPCOSPmodel html
sampleValPCOSPmodel html
show-S4Model-method html
subset-CohortList-method html
trainData-S4Model-method html
trainData-set-S4Model-method html
trainData-set html
trainData html
trainModel-ClinicalModel-method html
trainModel-ConsensusMetaclusteringModel-method
html
trainModel-CoxModel-method html
trainModel-GeneFuModel-method html
trainModel-NCSModel-method html
trainModel-PCOSP-method html
trainModel-RGAModel-method html
trainModel-RLSModel-method html
trainModel html
validateModel-ClinicalModel-CohortList-method
html
validateModel-ClinicalModel-SurvivalExperiment-method
html
validateModel-ConsensusMetaclusteringModel-ConsensusMetaclusteringModel-method
html
validateModel-GeneFuModel-CohortList-method
html
validateModel-GeneFuModel-SurvivalExperiment-method
html
validateModel-PCOSP_or_RLS_or_RGA-CohortList-method
html
validateModel-PCOSP_or_RLS_or_RGA-SurvivalExperiment-method
html
validateModel html
validationData-S4Model-method html
validationData-SurvivalModel-method html
validationData-set-S4Model-List_or_list_or_NULL-method
html
validationData-set-SurvivalModel-CohortList-method
html
validationData-set html
validationData html
validationStats-S4Model-method html
validationStats-SurvivalModel-method html
validationStats-set-S4Model-DFrame_or_data.frame_data.table_or_NULL-method
html
validationStats-set-SurvivalModel-data.frame-method
html
validationStats-set html
validationStats html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PDATK)
Making 'packages.html' ... done
PDATK.Rcheck/tests/testthat.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(PDATK)
Loading required package: SummarizedExperiment
Loading required package: MatrixGenerics
Loading required package: matrixStats
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
colWeightedMeans, colWeightedMedians, colWeightedSds,
colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
rowWeightedSds, rowWeightedVars
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Loading required package: GenomeInfoDb
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'Biobase'
The following object is masked from 'package:MatrixGenerics':
rowMedians
The following objects are masked from 'package:matrixStats':
anyMissing, rowMedians
>
> test_check("PDATK")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 77 ]
>
> proc.time()
user system elapsed
16.23 1.18 17.40
PDATK.Rcheck/PDATK-Ex.timings
| name | user | system | elapsed | |
| CSPC_MAE | 0.00 | 0.02 | 0.02 | |
| ClinicalModel-class | 0.05 | 0.01 | 0.06 | |
| ClinicalModel | 0.05 | 0.02 | 0.06 | |
| CohortList | 0.03 | 0.00 | 0.03 | |
| ConsensusMetaclusteringModel | 0 | 0 | 0 | |
| CoxModel | 0.22 | 0.01 | 0.24 | |
| GeneFuModel | 0.07 | 0.02 | 0.09 | |
| ModelComparison | 1.21 | 0.09 | 1.30 | |
| PCOSP | 0.06 | 0.00 | 0.06 | |
| RandomGeneAssignmentModel | 0.05 | 0.00 | 0.05 | |
| RandomLabelShufflingModel | 0.04 | 0.02 | 0.07 | |
| SurvivalExperiment | 0.05 | 0.00 | 0.04 | |
| SurvivalModel-class | 0.03 | 0.00 | 0.04 | |
| SurvivalModel | 0.03 | 0.00 | 0.03 | |
| assignColDataColumn | 0.02 | 0.00 | 0.01 | |
| assignSubtypes-CohortList-list-method | 0.23 | 0.01 | 0.25 | |
| assignSubtypes-SurvivalExperiment-data.frame-method | 0.02 | 0.02 | 0.03 | |
| assignSubtypes | 0.03 | 0.00 | 0.03 | |
| barPlotModelComparison-ClinicalModel-PCOSP_or_RLS_or_RGA-method | 0.47 | 0.03 | 0.50 | |
| barPlotModelComparison | 0.42 | 0.04 | 0.47 | |
| birnbaum | 0 | 0 | 0 | |
| chen | 0 | 0 | 0 | |
| cohortSubtypeDFs | 0 | 0 | 0 | |
| compareModels-ModelComparison-SurvivalModel-method | 0.46 | 0.00 | 0.47 | |
| compareModels-SurvivalModel-SurvivalModel-method | 0.43 | 0.02 | 0.44 | |
| compareModels | 0.40 | 0.03 | 0.43 | |
| dropNotCensored-CohortList-method | 0.31 | 0.00 | 0.32 | |
| dropNotCensored-SurvivalExperiment-method | 0.04 | 0.00 | 0.03 | |
| dropNotCensored | 0.03 | 0.00 | 0.03 | |
| existingClassifierData | 0.01 | 0.00 | 0.01 | |
| findCommonGenes-CohortList-method | 0.02 | 0.00 | 0.02 | |
| findCommonGenes | 0.01 | 0.00 | 0.01 | |
| findCommonSamples-CohortList-method | 0.02 | 0.02 | 0.04 | |
| findCommonSamples | 0.03 | 0.00 | 0.03 | |
| forestPlot-ModelComparison-method | 0.44 | 0.01 | 0.45 | |
| forestPlot-PCOSP_or_ClinicalModel-method | 0.03 | 0.00 | 0.03 | |
| forestPlot | 0.08 | 0.02 | 0.10 | |
| getModelSeed-SurvivalModel-method | 0 | 0 | 0 | |
| getModelSeed | 0.01 | 0.00 | 0.01 | |
| getTopFeatures-PCOSP-method | 0.02 | 0.00 | 0.02 | |
| getTopFeatures-SummarizedExperiment-method | 0.11 | 0.00 | 0.11 | |
| getTopFeatures | 0 | 0 | 0 | |
| haiderSigScores | 0.01 | 0.00 | 0.01 | |
| hasColDataColumns | 0 | 0 | 0 | |
| merge-SurvivalExperiment-SurvivalExperiment-method | 0.08 | 0.00 | 0.08 | |
| modelParams-set | 0.00 | 0.01 | 0.02 | |
| modelParams | 0.02 | 0.00 | 0.01 | |
| models-SurvivalModel-method | 0.01 | 0.00 | 0.02 | |
| models-set-SurvivalModel-SimpleList-method | 0.02 | 0.00 | 0.01 | |
| models-set | 0 | 0 | 0 | |
| models | 0.00 | 0.02 | 0.02 | |
| normalsMAE | 0 | 0 | 0 | |
| plotROC-PCOSP-method | 0.09 | 0.00 | 0.09 | |
| predictClasses-CohortList-ClinicalModel-method | 0.17 | 0.02 | 0.19 | |
| predictClasses-CohortList-PCOSP_or_RLS_or_RGA-method | 0.22 | 0.01 | 0.23 | |
| predictClasses-SurvivalExperiment-ClinicalModel-method | 0.08 | 0.03 | 0.11 | |
| predictClasses-SurvivalExperiment-PCOSP_or_RLS_or_RGA-method | 0.06 | 0.02 | 0.08 | |
| predictClasses | 0.08 | 0.01 | 0.09 | |
| rankFeatures-SummarizedExperiment-method | 0.1 | 0.0 | 0.1 | |
| rankFeatures | 0.07 | 0.00 | 0.08 | |
| removeColDataFactorColumns | 0.00 | 0.02 | 0.01 | |
| removeFactorColumns | 0 | 0 | 0 | |
| renameColDataColumns | 0.00 | 0.01 | 0.02 | |
| renameColumns | 0 | 0 | 0 | |
| sampleClinicalModel | 0.02 | 0.00 | 0.01 | |
| sampleCohortList | 0.02 | 0.00 | 0.02 | |
| sampleICGCmicro | 0.00 | 0.02 | 0.01 | |
| samplePCOSPmodel | 0.01 | 0.00 | 0.02 | |
| samplePCOSPpredList | 0.02 | 0.00 | 0.02 | |
| samplePCSIsurvExp | 0.01 | 0.00 | 0.01 | |
| sampleRGAmodel | 0 | 0 | 0 | |
| sampleRLSmodel | 0 | 0 | 0 | |
| sampleTrainedPCOSPmodel | 0.01 | 0.00 | 0.01 | |
| sampleValPCOSPmodel | 0.02 | 0.00 | 0.02 | |
| show-S4Model-method | 0.05 | 0.00 | 0.05 | |
| subset-CohortList-method | 0.11 | 0.00 | 0.10 | |
| trainData-set | 0.01 | 0.00 | 0.02 | |
| trainData | 0 | 0 | 0 | |
| trainModel-ClinicalModel-method | 0.02 | 0.02 | 0.03 | |
| trainModel-PCOSP-method | 0.62 | 0.01 | 0.64 | |
| trainModel-RGAModel-method | 0.63 | 0.02 | 0.64 | |
| trainModel-RLSModel-method | 0.57 | 0.01 | 0.60 | |
| trainModel | 0.63 | 0.00 | 0.62 | |
| validateModel-ClinicalModel-CohortList-method | 0.14 | 0.02 | 0.16 | |
| validateModel-ClinicalModel-SurvivalExperiment-method | 0.39 | 0.01 | 0.40 | |
| validateModel-GeneFuModel-CohortList-method | 0.55 | 0.02 | 0.57 | |
| validateModel-PCOSP_or_RLS_or_RGA-CohortList-method | 0.53 | 0.02 | 0.54 | |
| validateModel-PCOSP_or_RLS_or_RGA-SurvivalExperiment-method | 0.55 | 0.00 | 0.55 | |
| validateModel | 0.06 | 0.00 | 0.06 | |
| validationData-SurvivalModel-method | 0.00 | 0.01 | 0.02 | |
| validationData-set-SurvivalModel-CohortList-method | 0 | 0 | 0 | |
| validationData-set | 0.00 | 0.02 | 0.01 | |
| validationData | 0 | 0 | 0 | |
| validationStats-SurvivalModel-method | 0.00 | 0.01 | 0.02 | |
| validationStats-set-SurvivalModel-data.frame-method | 0.01 | 0.00 | 0.02 | |
| validationStats-set | 0 | 0 | 0 | |
| validationStats | 0.02 | 0.00 | 0.01 | |