Andrzej Oleś
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/EBImage |
| git_branch: master |
| git_last_commit: a5133da |
| git_last_commit_date: 2021-10-26 11:49:28 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:26 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the EBImage package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EBImage.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 564/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| EBImage 4.37.0 (landing page) Andrzej Oleś
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: EBImage |
| Version: 4.37.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:EBImage.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings EBImage_4.37.0.tar.gz |
| StartedAt: 2022-03-17 19:00:16 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 19:01:51 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 95.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: EBImage.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:EBImage.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings EBImage_4.37.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/EBImage.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'EBImage/DESCRIPTION' ... OK
* this is package 'EBImage' version '4.37.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EBImage' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'D:/biocbuild/bbs-3.15-bioc/R/library/EBImage/libs/x64/EBImage.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
EBImage 2.8 0.69 6.36
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'test.R'
Comparing 'test.Rout' to 'test.Rout.save' ...238,308c238,308
< new test (hash=0dd403afc6b994a2)
< checking 'show' ............................... PASS (28a07aa400220e9c) -0.1
< checking 'print' .............................. PASS (7ff286491e0fb82d) -0.1
< checking 'hist' ............................... PASS (a7005488227f4ae4) Inf
< checking '>' .................................. PASS (d3559f388747a87f) -0.1
< checking '+' .................................. PASS (0dd403afc6b994a2) -0.1
< checking '/' .................................. PASS (0dd403afc6b994a2) -0.1
< checking '*' .................................. PASS (0dd403afc6b994a2) -0.1
< checking 'median' ............................. PASS (0c72e13f2da056a7) -0.1
< checking 'quantile' ........................... PASS (d6d34cfe857308c8) -0.1
< checking 'Image' .............................. PASS (a1d03d4118094283) -0.1
< checking 'as.Image' ........................... PASS (0dd403afc6b994a2) -0.1
< checking 'is.Image' ........................... PASS (c5cfdf6777477824) 0.9
< checking 'imageData' .......................... PASS (f876a3f8e49b5beb) -0.1
< checking 'imageData<-' ........................ PASS (0dd403afc6b994a2) -0.1
< checking 'as.raster' .......................... PASS (33de24a1fac6bd97) -0.1
< checking 'colorMode<-' ........................ PASS (0dd403afc6b994a2) -0.1
< checking 'numberOfFrames' ..................... PASS (8e2352fb8e5e5114) 0.9
< checking 'getFrames' .......................... PASS (6dc251bf107e7a89) -0.2
< checking 'display' ............................ PASS (b6e562444aa235fd) 165.3
< checking 'display' ............................ PASS (4a72ef17f0bfbfcd) -0.1
< checking 'image' .............................. PASS (4a72ef17f0bfbfcd) -0.1
< checking 'drawCircle' ......................... PASS (6f088cd968ff93bd) 447.9
< checking '[' .................................. PASS (e9d628cb714f2ae4) -0.1
< checking 'resize' ............................. PASS (4d1192f70ce09751) -0.1
< checking 'rotate' ............................. PASS (4e59843d240ab1dd) -0.1
< checking 'flip' ............................... PASS (0dd403afc6b994a2) -0.1
< checking 'flop' ............................... PASS (0dd403afc6b994a2) -0.1
< checking 'translate' .......................... PASS (568f8a693cf3d43d) 1932.9
< checking 'affine' ............................. PASS (0dd403afc6b994a2) -0.1
< checking 'transpose' .......................... PASS (0dd403afc6b994a2) -0.1
< checking 'thresh' ............................. PASS (925a8ec641d9a080) -0.1
< checking 'channel' ............................ PASS (0dd403afc6b994a2) -0.1
< checking 'otsu' ............................... PASS (4f84ddb5ca598088) -0.09804688
< checking 'bwlabel' ............................ PASS (925a8ec641d9a080) -0.1
< checking 'colorLabels' ........................ PASS (60d924e59b167063) -0.1
< checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
< checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
< checking 'paintObjects' ....................... PASS (0dd403afc6b994a2) -0.1
< checking 'rmObjects' .......................... PASS (925a8ec641d9a080) -0.1
< checking 'reenumerate' ........................ PASS (925a8ec641d9a080) -0.1
< checking 'reenumerate' ........................ PASS (925a8ec641d9a080) -0.1
< checking 'computeFeatures' .................... PASS (4a72ef17f0bfbfcd) -0.1
< checking 'computeFeatures' .................... PASS (50090732ff9f9962) 19422.3
< checking 'ocontour' ........................... PASS (66766fdfc8e61cb4) -0.1
< checking 'normalize' .......................... PASS (0dd403afc6b994a2) -0.1
< checking 'normalize' .......................... PASS (0dd403afc6b994a2) -0.1
< checking 'gblur' .............................. PASS (0dd403afc6b994a2) -0.1
< checking 'filter2' ............................ PASS (0dd403afc6b994a2) -0.1
< checking 'medianFilter' ....................... PASS (0dd403afc6b994a2) -0.1
< checking 'equalize' ........................... PASS (0dd403afc6b994a2) -0.1
< checking 'erode' .............................. PASS (d3559f388747a87f) -0.1
< checking 'dilate' ............................. PASS (d3559f388747a87f) -0.1
< checking 'opening' ............................ PASS (d3559f388747a87f) -0.1
< checking 'closing' ............................ PASS (d3559f388747a87f) -0.1
< checking 'whiteTopHat' ........................ PASS (0dd403afc6b994a2) -0.1
< checking 'blackTopHat' ........................ PASS (0dd403afc6b994a2) -0.1
< checking 'selfComplementaryTopHat' ............ PASS (0dd403afc6b994a2) -0.1
< checking 'distmap' ............................ PASS (0dd403afc6b994a2) -0.1
< checking 'watershed' .......................... PASS (925a8ec641d9a080) -0.1
< checking 'floodFill' .......................... PASS (d6f1f3e11a9f5ca7) 1039.9
< checking 'fillHull' ........................... PASS (d3559f388747a87f) -0.1
< checking 'propagate' .......................... PASS (925a8ec641d9a080) -0.1
< checking 'toRGB' .............................. PASS (60d924e59b167063) -0.1
< checking 'rgbImage' ........................... PASS (60d924e59b167063) -0.1
< checking 'colormap' ........................... PASS (6fd20c5c7fe272b8) 2079.9
< checking 'combine' ............................ PASS (30f1d97e53a17117) -0.1
< checking 'combine' ............................ PASS (1bf00fb21a5b79fd) -0.1
< checking 'tile' ............................... PASS (c0936f2bb862eeb6) 42140.88
< checking 'untile' ............................. PASS (35e673bec7ac0968) 16809.31
< checking 'abind' .............................. PASS (30f1d97e53a17117) -0.1
---
> new test (hash=03724aaea0cf64b4)
> checking 'show' ............................... PASS (5a93d2a87828912b) -0.1
> checking 'print' .............................. PASS (0007ac6dee6a14da) -0.1
> checking 'hist' ............................... PASS (8ef6dc298b72d591) Inf
> checking '>' .................................. PASS (91517a74c2895221) -0.1
> checking '+' .................................. PASS (03724aaea0cf64b4) -0.1
> checking '/' .................................. PASS (03724aaea0cf64b4) -0.1
> checking '*' .................................. PASS (03724aaea0cf64b4) -0.1
> checking 'median' ............................. PASS (8396e8397399bb05) -0.1
> checking 'quantile' ........................... PASS (5e6b34b7d87730f0) -0.1
> checking 'Image' .............................. PASS (e4b04ad17c704314) -0.1
> checking 'as.Image' ........................... PASS (03724aaea0cf64b4) -0.1
> checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
> checking 'imageData' .......................... PASS (1ba6fa2bac2e6157) -0.1
> checking 'imageData<-' ........................ PASS (03724aaea0cf64b4) -0.1
> checking 'as.raster' .......................... PASS (e8f1c1057deba532) -0.1
> checking 'colorMode<-' ........................ PASS (03724aaea0cf64b4) -0.1
> checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
> checking 'getFrames' .......................... PASS (437d348905e7edea) -0.2
> checking 'display' ............................ PASS (4c9befc7a9f9f22e) 165.3
> checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
> checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
> checking 'drawCircle' ......................... PASS (76ab1bcd040f633c) 447.9
> checking '[' .................................. PASS (3c13b8fa403f3a61) -0.1
> checking 'resize' ............................. PASS (59b56ab6bbfb3b98) -0.1
> checking 'rotate' ............................. PASS (d9d1aa63f93f02d0) -0.1
> checking 'flip' ............................... PASS (03724aaea0cf64b4) -0.1
> checking 'flop' ............................... PASS (03724aaea0cf64b4) -0.1
> checking 'translate' .......................... PASS (8f2e405bb6973b4a) 1932.9
> checking 'affine' ............................. PASS (03724aaea0cf64b4) -0.1
> checking 'transpose' .......................... PASS (03724aaea0cf64b4) -0.1
> checking 'thresh' ............................. PASS (c13bdaf3a3ddff95) -0.1
> checking 'channel' ............................ PASS (03724aaea0cf64b4) -0.1
> checking 'otsu' ............................... PASS (e3b39ef666a0ce39) -0.09804688
> checking 'bwlabel' ............................ PASS (c13bdaf3a3ddff95) -0.1
> checking 'colorLabels' ........................ PASS (73c6f975aa7b9638) -0.1
> checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
> checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
> checking 'paintObjects' ....................... PASS (03724aaea0cf64b4) -0.1
> checking 'rmObjects' .......................... PASS (c13bdaf3a3ddff95) -0.1
> checking 'reenumerate' ........................ PASS (c13bdaf3a3ddff95) -0.1
> checking 'reenumerate' ........................ PASS (c13bdaf3a3ddff95) -0.1
> checking 'computeFeatures' .................... PASS (d956c282ac7180e4) -0.1
> checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 19422.3
> checking 'ocontour' ........................... PASS (0cbbfbd6c2b5057a) -0.1
> checking 'normalize' .......................... PASS (03724aaea0cf64b4) -0.1
> checking 'normalize' .......................... PASS (03724aaea0cf64b4) -0.1
> checking 'gblur' .............................. PASS (03724aaea0cf64b4) -0.1
> checking 'filter2' ............................ PASS (03724aaea0cf64b4) -0.1
> checking 'medianFilter' ....................... PASS (03724aaea0cf64b4) -0.1
> checking 'equalize' ........................... PASS (03724aaea0cf64b4) -0.1
> checking 'erode' .............................. PASS (91517a74c2895221) -0.1
> checking 'dilate' ............................. PASS (91517a74c2895221) -0.1
> checking 'opening' ............................ PASS (91517a74c2895221) -0.1
> checking 'closing' ............................ PASS (91517a74c2895221) -0.1
> checking 'whiteTopHat' ........................ PASS (03724aaea0cf64b4) -0.1
> checking 'blackTopHat' ........................ PASS (03724aaea0cf64b4) -0.1
> checking 'selfComplementaryTopHat' ............ PASS (03724aaea0cf64b4) -0.1
> checking 'distmap' ............................ PASS (03724aaea0cf64b4) -0.1
> checking 'watershed' .......................... PASS (c13bdaf3a3ddff95) -0.1
> checking 'floodFill' .......................... PASS (b7521415b91cdd6a) 1039.9
> checking 'fillHull' ........................... PASS (91517a74c2895221) -0.1
> checking 'propagate' .......................... PASS (c13bdaf3a3ddff95) -0.1
> checking 'toRGB' .............................. PASS (73c6f975aa7b9638) -0.1
> checking 'rgbImage' ........................... PASS (73c6f975aa7b9638) -0.1
> checking 'colormap' ........................... PASS (f55f763f0bce6d0e) 2079.9
> checking 'combine' ............................ PASS (7d8cabf23a7147bf) -0.1
> checking 'combine' ............................ PASS (dfe23dd6a6fd08b8) -0.1
> checking 'tile' ............................... PASS (63b8539b976f10f9) 42140.88
> checking 'untile' ............................. PASS (fc2ab5092822346e) 16809.31
> checking 'abind' .............................. PASS (7d8cabf23a7147bf) -0.1
313,384c313,384
< new test (hash=84811adc9ccb6a43)
< checking 'show' ............................... PASS (efe22f560cf2ee5c) -0.1
< checking 'print' .............................. PASS (74faac36aea39eec) -0.1
< checking 'hist' ............................... PASS (0c56f536c0973a7c) Inf
< checking '>' .................................. PASS (bfe40ba0889a2d11) 324.9
< checking '+' .................................. PASS (6b457795bc65c18b) 649.9
< checking '/' .................................. PASS (05c5b11fa9b2068d) 162.4
< checking '*' .................................. PASS (6b457795bc65c18b) 649.9
< checking 'median' ............................. PASS (8e2352fb8e5e5114) 0.9
< checking 'quantile' ........................... PASS (c429873628f1b765) 14.9
< checking 'Image' .............................. PASS (a7134010d9775a89) 324.9
< checking 'as.Image' ........................... PASS (84811adc9ccb6a43) 324.9
< checking 'is.Image' ........................... PASS (c5cfdf6777477824) 0.9
< checking 'imageData' .......................... PASS (86add6eb3d9c9aea) 324.9
< checking 'imageData<-' ........................ PASS (84811adc9ccb6a43) 324.9
< checking 'as.raster' .......................... PASS (08f26b538ed6f151) -0.1
< checking 'colorMode<-' ........................ PASS (84811adc9ccb6a43) 324.9
< checking 'numberOfFrames' ..................... PASS (8e2352fb8e5e5114) 0.9
< checking 'getFrames' .......................... PASS (52fa1d1a01e8b1a6) 324.8
< checking 'display' ............................ PASS (0df7f39e89a77641) 150.3
< checking 'display' ............................ PASS (4a72ef17f0bfbfcd) -0.1
< checking 'image' .............................. PASS (4a72ef17f0bfbfcd) -0.1
< checking 'drawCircle' ......................... PASS (2cd64c1bdc442f99) 324.9
< checking '[' .................................. PASS (84811adc9ccb6a43) 324.9
< checking 'resize' ............................. PASS (e856a1c0400af5bd) 4543605
< checking 'rotate' ............................. PASS (76128c4334b78309) 483.6843
< checking 'flip' ............................... PASS (84811adc9ccb6a43) 324.9
< checking 'flop' ............................... PASS (84811adc9ccb6a43) 324.9
< checking 'translate' .......................... PASS (2cd64c1bdc442f99) 324.9
< checking 'affine' ............................. PASS (190906c8867b1585) 39.9
< checking 'transpose' .......................... PASS (84811adc9ccb6a43) 324.9
< checking 'thresh' ............................. PASS (81904b15ab632676) -0.1
< checking 'channel' ............................ PASS (84811adc9ccb6a43) 324.9
< checking 'otsu' ............................... PASS (341a03667d4038cf) 0.8980469
< checking 'bwlabel' ............................ PASS (84811adc9ccb6a43) 324.9
< checking 'colorLabels' ........................ PASS (9db9e8962f437e2a) 2849.9
< checking 'stackObjects' ....................... PASS (6761caa75c9faef8) 324.9
< checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
< checking 'paintObjects' ....................... PASS (baaf7570b7456799) 270.7333
< checking 'rmObjects' .......................... PASS (81904b15ab632676) -0.1
< checking 'reenumerate' ........................ PASS (81904b15ab632676) -0.1
< checking 'reenumerate' ........................ PASS (84811adc9ccb6a43) 324.9
< checking 'computeFeatures' .................... PASS (b3ba135564a7c4b8) 950932.9
< checking 'computeFeatures' .................... PASS (50090732ff9f9962) 19422.3
< checking 'ocontour' ........................... PASS (a77df0f3bf26b51b) 1087.8
< checking 'localCurvature' ..................... PASS (8cdca9a0513c3339) 1008.955
< checking 'normalize' .......................... PASS (2cd64c1bdc442f99) 324.9
< checking 'normalize' .......................... PASS (2cd64c1bdc442f99) 324.9
< checking 'gblur' .............................. PASS (2c3d3965498eeab8) -0.1
< checking 'filter2' ............................ PASS (04f5371e266b17cb) 8124.9
< checking 'medianFilter' ....................... PASS (2cd64c1bdc442f99) 324.9
< checking 'equalize' ........................... PASS (84811adc9ccb6a43) 324.9
< checking 'erode' .............................. PASS (bfe40ba0889a2d11) 324.9
< checking 'dilate' ............................. PASS (bfe40ba0889a2d11) 324.9
< checking 'opening' ............................ PASS (bfe40ba0889a2d11) 324.9
< checking 'closing' ............................ PASS (bfe40ba0889a2d11) 324.9
< checking 'whiteTopHat' ........................ PASS (81904b15ab632676) -0.1
< checking 'blackTopHat' ........................ PASS (81904b15ab632676) -0.1
< checking 'selfComplementaryTopHat' ............ PASS (6b457795bc65c18b) 649.9
< checking 'distmap' ............................ PASS (9bca8d045f7fd7aa) Inf
< checking 'watershed' .......................... PASS (84811adc9ccb6a43) 324.9
< checking 'floodFill' .......................... PASS (81904b15ab632676) -0.1
< checking 'fillHull' ........................... PASS (bfe40ba0889a2d11) 324.9
< checking 'propagate' .......................... PASS (81904b15ab632676) -0.1
< checking 'toRGB' .............................. PASS (a307a95144c4309e) 2849.9
< checking 'rgbImage' ........................... PASS (5ff2b4cc1405bf73) 1274.9
< checking 'colormap' ........................... PASS (3908fa70acc3aefc) 2652.253
< checking 'combine' ............................ PASS (4bf0d0b518924a84) 1274.9
< checking 'combine' ............................ PASS (bb2eb72f1cd4837d) 7874.9
< checking 'tile' ............................... PASS (408129daa1daae14) 24420.64
< checking 'untile' ............................. PASS (6ca10c8ebd1dd737) 10445.49
< checking 'abind' .............................. PASS (4bf0d0b518924a84) 1274.9
---
> new test (hash=5e369a5a8c06ea6e)
> checking 'show' ............................... PASS (d7ff39dcf34291a7) -0.1
> checking 'print' .............................. PASS (423045c171032825) -0.1
> checking 'hist' ............................... PASS (c32dc2571db86a0f) Inf
> checking '>' .................................. PASS (ab60d77d8694845c) 324.9
> checking '+' .................................. PASS (ccb4c957b356b423) 649.9
> checking '/' .................................. PASS (e68dd3c4bf42ae06) 162.4
> checking '*' .................................. PASS (ccb4c957b356b423) 649.9
> checking 'median' ............................. PASS (7c79dea3bfc1415b) 0.9
> checking 'quantile' ........................... PASS (03ab24e6a573bd6b) 14.9
> checking 'Image' .............................. PASS (e06d5f65342df035) 324.9
> checking 'as.Image' ........................... PASS (5e369a5a8c06ea6e) 324.9
> checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
> checking 'imageData' .......................... PASS (a72e950dc2c633c4) 324.9
> checking 'imageData<-' ........................ PASS (5e369a5a8c06ea6e) 324.9
> checking 'as.raster' .......................... PASS (76158aebe747f7e1) -0.1
> checking 'colorMode<-' ........................ PASS (5e369a5a8c06ea6e) 324.9
> checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
> checking 'getFrames' .......................... PASS (5be9802bf124fe9c) 324.8
> checking 'display' ............................ PASS (174250a6d96dee60) 150.3
> checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
> checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
> checking 'drawCircle' ......................... PASS (a3847050dd15905c) 324.9
> checking '[' .................................. PASS (5e369a5a8c06ea6e) 324.9
> checking 'resize' ............................. PASS (81601207cc4e4223) 4543605
> checking 'rotate' ............................. PASS (3db98677c68c5102) 483.6843
> checking 'flip' ............................... PASS (5e369a5a8c06ea6e) 324.9
> checking 'flop' ............................... PASS (5e369a5a8c06ea6e) 324.9
> checking 'translate' .......................... PASS (a3847050dd15905c) 324.9
> checking 'affine' ............................. PASS (92683959c9ed97c3) 39.9
> checking 'transpose' .......................... PASS (5e369a5a8c06ea6e) 324.9
> checking 'thresh' ............................. PASS (dafc92132d191221) -0.1
> checking 'channel' ............................ PASS (5e369a5a8c06ea6e) 324.9
> checking 'otsu' ............................... PASS (2abebb5cf42f343e) 0.8980469
> checking 'bwlabel' ............................ PASS (5e369a5a8c06ea6e) 324.9
> checking 'colorLabels' ........................ PASS (a7e8ce686b7c6eec) 2849.9
> checking 'stackObjects' ....................... PASS (995b03d1197fdd56) 324.9
> checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
> checking 'paintObjects' ....................... PASS (fbe94deb2c7c7e12) 270.7333
> checking 'rmObjects' .......................... PASS (dafc92132d191221) -0.1
> checking 'reenumerate' ........................ PASS (dafc92132d191221) -0.1
> checking 'reenumerate' ........................ PASS (5e369a5a8c06ea6e) 324.9
> checking 'computeFeatures' .................... PASS (1e197f38fe3db7df) 950932.9
> checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 19422.3
> checking 'ocontour' ........................... PASS (1ad47b9dc5e279b9) 1087.8
> checking 'localCurvature' ..................... PASS (07aef8b9d0c42e30) 1008.955
> checking 'normalize' .......................... PASS (a3847050dd15905c) 324.9
> checking 'normalize' .......................... PASS (a3847050dd15905c) 324.9
> checking 'gblur' .............................. PASS (34be5e3328df689f) -0.1
> checking 'filter2' ............................ PASS (046936d9c22a44d3) 8124.9
> checking 'medianFilter' ....................... PASS (a3847050dd15905c) 324.9
> checking 'equalize' ........................... PASS (5e369a5a8c06ea6e) 324.9
> checking 'erode' .............................. PASS (ab60d77d8694845c) 324.9
> checking 'dilate' ............................. PASS (ab60d77d8694845c) 324.9
> checking 'opening' ............................ PASS (ab60d77d8694845c) 324.9
> checking 'closing' ............................ PASS (ab60d77d8694845c) 324.9
> checking 'whiteTopHat' ........................ PASS (dafc92132d191221) -0.1
> checking 'blackTopHat' ........................ PASS (dafc92132d191221) -0.1
> checking 'selfComplementaryTopHat' ............ PASS (ccb4c957b356b423) 649.9
> checking 'distmap' ............................ PASS (4620168ff1c2a437) Inf
> checking 'watershed' .......................... PASS (5e369a5a8c06ea6e) 324.9
> checking 'floodFill' .......................... PASS (dafc92132d191221) -0.1
> checking 'fillHull' ........................... PASS (ab60d77d8694845c) 324.9
> checking 'propagate' .......................... PASS (dafc92132d191221) -0.1
> checking 'toRGB' .............................. PASS (f3b87c6a40e54c68) 2849.9
> checking 'rgbImage' ........................... PASS (a1c021690e069b07) 1274.9
> checking 'colormap' ........................... PASS (948ec87fd2adc7a9) 2652.253
> checking 'combine' ............................ PASS (8c39678924e12a09) 1274.9
> checking 'combine' ............................ PASS (072d49f53072e43b) 7874.9
> checking 'tile' ............................... PASS (16eb65ee8bbcb932) 24420.64
> checking 'untile' ............................. PASS (8bcebbd606485233) 10445.49
> checking 'abind' .............................. PASS (8c39678924e12a09) 1274.9
390,461c390,461
< new test (hash=db735d61b6e1ed02)
< checking 'show' ............................... PASS (2369a7c0462a6b5a) -0.1
< checking 'print' .............................. PASS (2369a7c0462a6b5a) -0.1
< checking 'hist' ............................... PASS (e72dc44a7d1a3974) 20513.55
< checking '>' .................................. PASS (741aeb61bea6e5ea) 1217568
< checking '+' .................................. PASS (29603c1a0d01fe20) 2940144
< checking '/' .................................. PASS (304543247e80325e) 735035.9
< checking '*' .................................. PASS (29603c1a0d01fe20) 2940144
< checking 'median' ............................. PASS (0eba0d97082030ab) 0.04509804
< checking 'quantile' ........................... PASS (34059ab9cd6355fe) 7.331373
< checking 'Image' .............................. PASS (f9a95b22465a24d0) 1470072
< checking 'as.Image' ........................... PASS (0ee060e48fd6af54) 1470072
< checking 'is.Image' ........................... PASS (22434d0f508e0455) -0.1
< checking 'imageData' .......................... PASS (db735d61b6e1ed02) 1470072
< checking 'imageData<-' ........................ PASS (db735d61b6e1ed02) 1470072
< checking 'as.raster' .......................... PASS (1121bcfe44305c0d) -0.1
< checking 'colorMode<-' ........................ PASS (47a5f37493855c0e) -0.1
< checking 'numberOfFrames' ..................... PASS (8e2352fb8e5e5114) 0.9
< checking 'getFrames' .......................... PASS (fefcd63e624c1bee) 1470072
< checking 'display' ............................ PASS (d12c25577fc0ae01) 397.3
< checking 'display' ............................ PASS (4a72ef17f0bfbfcd) -0.1
< checking 'image' .............................. PASS (4a72ef17f0bfbfcd) -0.1
< checking 'drawCircle' ......................... PASS (44178ad73c7a6c57) 1607165
< checking '[' .................................. PASS (362dc96ab12005d8) 48.94314
< checking 'resize' ............................. PASS (88656458551aa663) 1419476
< checking 'rotate' ............................. PASS (a77b95723957bd53) 2493977
< checking 'flip' ............................... PASS (af4a5804ae6963f0) 1195977
< checking 'flop' ............................... PASS (2390c64fbc01936c) 1462119
< checking 'translate' .......................... PASS (ca8d506746cbe8a6) 2133961
< checking 'affine' ............................. PASS (5d26bb5c15069253) 54171.17
< checking 'transpose' .......................... PASS (28e006fbd8a3fb4f) 1522055
< checking 'thresh' ............................. PASS (1000e9571087e50a) 1262811
< checking 'channel' ............................ PASS (db735d61b6e1ed02) 1470072
< checking 'otsu' ............................... PASS (beff39d5c5d30532) 0.3160156
< checking 'bwlabel' ............................ PASS (4657b717111a5a09) 1199387
< checking 'colorLabels' ........................ PASS (ea2e6bfde313bfe2) 10021713
< checking 'stackObjects' ....................... PASS (1fee09fec27d58c3) 718602.9
< checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
< checking 'paintObjects' ....................... PASS (53d63c2995c63fe7) 1447733
< checking 'rmObjects' .......................... PASS (93e55f84762d3e10) -0.1
< checking 'reenumerate' ........................ PASS (93e55f84762d3e10) -0.1
< checking 'reenumerate' ........................ PASS (4657b717111a5a09) 1199387
< checking 'computeFeatures' .................... PASS (de6203a592fc892f) 3634215
< checking 'computeFeatures' .................... PASS (dfdbe9cdff74e039) 145634.3
< checking 'ocontour' ........................... PASS (c6fa8ca01032d0e0) 1050552
< checking 'localCurvature' ..................... PASS (611e832ecb1e2d86) 1049392
< checking 'normalize' .......................... PASS (384f4d5f164b8927) 1431381
< checking 'normalize' .......................... PASS (00134ee633d7f224) 1266798
< checking 'gblur' .............................. PASS (8a32f10682836e3a) 1466231
< checking 'filter2' ............................ PASS (edc473eef918a772) 36592176
< checking 'medianFilter' ....................... PASS (03e60235796a34f8) 1454712
< checking 'equalize' ........................... PASS (ead728b91c59bdf3) 2642794
< checking 'erode' .............................. PASS (722bb94152cd5404) 759774.9
< checking 'dilate' ............................. PASS (2985310f2fc42356) 1797576
< checking 'opening' ............................ PASS (14eeb88ccfc0334a) 1152484
< checking 'closing' ............................ PASS (6b0640fcae8bbb0f) 1232737
< checking 'whiteTopHat' ........................ PASS (b78629ad9870f67e) 18730.15
< checking 'blackTopHat' ........................ PASS (167951a7a45661e2) 27716.23
< checking 'selfComplementaryTopHat' ............ PASS (0c1d3178fb3af334) 2929436
< checking 'distmap' ............................ PASS (66fe9e5107b4d571) 3826969
< checking 'watershed' .......................... PASS (32f28339d17a2852) 2762113
< checking 'floodFill' .......................... PASS (66c38fc4987749d4) 1470197
< checking 'fillHull' ........................... PASS (741aeb61bea6e5ea) 1217568
< checking 'propagate' .......................... PASS (357bd8bfcbd1047d) 3464201
< checking 'toRGB' .............................. PASS (3868753482eff6e3) 12381911
< checking 'rgbImage' ........................... PASS (210c9f2868c65cb5) 4859544
< checking 'colormap' ........................... PASS (fbbe01fd08b104c7) 11126039
< checking 'combine' ............................ PASS (5a7e6609d362b469) 5597376
< checking 'combine' ............................ PASS (c23977e2dc8ace45) 33922678
< checking 'tile' ............................... PASS (05f2b454c26a295c) 78718054
< checking 'untile' ............................. PASS (263c2059331ac059) 72597772
< checking 'abind' .............................. PASS (5a7e6609d362b469) 5597376
---
> new test (hash=3e469356855e6210)
> checking 'show' ............................... PASS (0c6212669ee6288d) -0.1
> checking 'print' .............................. PASS (0c6212669ee6288d) -0.1
> checking 'hist' ............................... PASS (e7a708b4f96f88dc) 20513.55
> checking '>' .................................. PASS (0a927a877b0b85eb) 1217568
> checking '+' .................................. PASS (2c51607a58b46974) 2940144
> checking '/' .................................. PASS (a872fc97379d58f5) 735035.9
> checking '*' .................................. PASS (2c51607a58b46974) 2940144
> checking 'median' ............................. PASS (d2a8be6a346c3d28) 0.04509804
> checking 'quantile' ........................... PASS (645f4aadbce7bdea) 7.331373
> checking 'Image' .............................. PASS (923c3911d773eb6e) 1470072
> checking 'as.Image' ........................... PASS (b7ae9a016c5a19ec) 1470072
> checking 'is.Image' ........................... PASS (69f0cf1cfd5cd8ed) -0.1
> checking 'imageData' .......................... PASS (3e469356855e6210) 1470072
> checking 'imageData<-' ........................ PASS (3e469356855e6210) 1470072
> checking 'as.raster' .......................... PASS (42efa6b3b04694cf) -0.1
> checking 'colorMode<-' ........................ PASS (b8d002268bfac3eb) -0.1
> checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
> checking 'getFrames' .......................... PASS (d38b8f6c1a1504a8) 1470072
> checking 'display' ............................ PASS (dada341199e50c3d) 397.3
> checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
> checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
> checking 'drawCircle' ......................... PASS (872845fa91c628a6) 1607165
> checking '[' .................................. PASS (711703fde7cc915e) 48.94314
> checking 'resize' ............................. PASS (7882055c8b670bf4) 1419476
> checking 'rotate' ............................. PASS (559860bb5c99cb82) 2493977
> checking 'flip' ............................... PASS (8834ca70d449207a) 1195977
> checking 'flop' ............................... PASS (d73abd773dfc066a) 1462119
> checking 'translate' .......................... PASS (5744e19288b9d7f0) 2133961
> checking 'affine' ............................. PASS (11616142290451c1) 54171.17
> checking 'transpose' .......................... PASS (aa87d51a100b139f) 1522055
> checking 'thresh' ............................. PASS (c790c6a6872d73d0) 1262811
> checking 'channel' ............................ PASS (3e469356855e6210) 1470072
> checking 'otsu' ............................... PASS (3aea1e91f3716bcb) 0.3160156
> checking 'bwlabel' ............................ PASS (5055cb94d5293a15) 1199387
> checking 'colorLabels' ........................ PASS (464d65c8da42be0d) 10021713
> checking 'stackObjects' ....................... PASS (c5669f863a2ba20e) 718602.9
> checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
> checking 'paintObjects' ....................... PASS (19a9fbb907cee1c4) 1447733
> checking 'rmObjects' .......................... PASS (365ace8a4657cb08) -0.1
> checking 'reenumerate' ........................ PASS (365ace8a4657cb08) -0.1
> checking 'reenumerate' ........................ PASS (5055cb94d5293a15) 1199387
> checking 'computeFeatures' .................... PASS (f59aa3f08e782acf) 3634215
> checking 'computeFeatures' .................... PASS (4e7e75f941531854) 145634.3
> checking 'ocontour' ........................... PASS (790a5f5b45092d41) 1050552
> checking 'localCurvature' ..................... PASS (fb6d4b13b08dcac4) 1049392
> checking 'normalize' .......................... PASS (1f79956b7887dd73) 1431381
> checking 'normalize' .......................... PASS (13a2d37d997199f9) 1266798
> checking 'gblur' .............................. PASS (203a6d72b1fd5eba) 1466231
> checking 'filter2' ............................ PASS (c82a1ece6902714d) 36592176
> checking 'medianFilter' ....................... PASS (4140c87b3a1db93d) 1454712
> checking 'equalize' ........................... PASS (ba175363e5576ad1) 2642794
> checking 'erode' .............................. PASS (bee7898f6d8d547b) 759774.9
> checking 'dilate' ............................. PASS (ed04adac54c645fd) 1797576
> checking 'opening' ............................ PASS (d1c6ca8aafbd90cb) 1152484
> checking 'closing' ............................ PASS (b8cf094b52fe1744) 1232737
> checking 'whiteTopHat' ........................ PASS (9b53631dd222dd50) 18730.15
> checking 'blackTopHat' ........................ PASS (089cd73847d97de5) 27716.23
> checking 'selfComplementaryTopHat' ............ PASS (cc378ce1d0553ecd) 2929436
> checking 'distmap' ............................ PASS (f98a44bf21faa222) 3826969
> checking 'watershed' .......................... PASS (b39c109238f0c74b) 2762113
> checking 'floodFill' .......................... PASS (c59341ffade6129a) 1470197
> checking 'fillHull' ........................... PASS (0a927a877b0b85eb) 1217568
> checking 'propagate' .......................... PASS (cec466bef7a2a81e) 3464201
> checking 'toRGB' .............................. PASS (5051d2b131286d46) 12381911
> checking 'rgbImage' ........................... PASS (ccc09b31890cd8df) 4859544
> checking 'colormap' ........................... PASS (b7020f3851eb7d7c) 11126039
> checking 'combine' ............................ PASS (5bda9f75cbc23401) 5597376
> checking 'combine' ............................ PASS (306e27bb3ec346e6) 33922678
> checking 'tile' ............................... PASS (870e7501fa1f3338) 78718054
> checking 'untile' ............................. PASS (868893e062dea032) 72597772
> checking 'abind' .............................. PASS (5bda9f75cbc23401) 5597376
467,538c467,538
< new test (hash=47850896f9c930e8)
< checking 'show' ............................... PASS (79d9208863175ae7) -0.1
< checking 'print' .............................. PASS (7ca80d9481e90728) -0.1
< checking 'hist' ............................... PASS (7e48d5cfd64bdf7b) 130241.3
< checking '>' .................................. PASS (fa6323783aa5b800) 988518.9
< checking '+' .................................. PASS (fcef9d9c3b1b6d69) 1531522
< checking '/' .................................. PASS (b6d4ddc3ea66b259) 382880.4
< checking '*' .................................. PASS (fcef9d9c3b1b6d69) 1531522
< checking 'median' ............................. PASS (acb249dde6db4b8b) 0.5039216
< checking 'quantile' ........................... PASS (915bcda165290ff4) 10.10392
< checking 'Image' .............................. PASS (47850896f9c930e8) 765760.9
< checking 'as.Image' ........................... PASS (47850896f9c930e8) 765760.9
< checking 'is.Image' ........................... PASS (c5cfdf6777477824) 0.9
< checking 'imageData' .......................... PASS (61513af72b88a4e4) 765760.9
< checking 'imageData<-' ........................ PASS (47850896f9c930e8) 765760.9
< checking 'as.raster' .......................... PASS (2b41d92af54b416a) -0.1
< checking 'colorMode<-' ........................ PASS (822df48d75796cae) 765760.9
< checking 'numberOfFrames' ..................... PASS (8e2352fb8e5e5114) 0.9
< checking 'getFrames' .......................... PASS (b93d23a4010b16df) 765760.8
< checking 'display' ............................ PASS (de11b0b2e7a37592) 333.3
< checking 'display' ............................ PASS (4a72ef17f0bfbfcd) -0.1
< checking 'image' .............................. PASS (4a72ef17f0bfbfcd) -0.1
< checking 'drawCircle' ......................... PASS (c65308597bd87bff) 782100.7
< checking '[' .................................. PASS (1f7ad11e553307b5) 1285.273
< checking 'resize' ............................. PASS (ff46a1ee14995b8f) 2941770
< checking 'rotate' ............................. PASS (f2dc87f2efabfa50) 1247487
< checking 'flip' ............................... PASS (800db51bb04c1dc9) 661525.2
< checking 'flop' ............................... PASS (bcbec13e3661d698) 768451.1
< checking 'translate' .......................... PASS (6f7dabbb36d0a8cb) 820434.5
< checking 'affine' ............................. PASS (b42e8198f8b288b3) 22238.15
< checking 'transpose' .......................... PASS (e7d25b58eeb821c5) 652051.4
< checking 'thresh' ............................. PASS (d01647e3023d6a73) 382924.9
< checking 'channel' ............................ PASS (fdfb0d7371845dcf) 162800.7
< checking 'otsu' ............................... PASS (eeb23c3a41116cd3) 0.03085937
< checking 'bwlabel' ............................ PASS (53954bb9151049f1) 832970.9
< checking 'colorLabels' ........................ PASS (6e003a68522a54ab) 3692613
< checking 'stackObjects' ....................... PASS (edd5b4b37aa43ebc) 596493.9
< checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
< checking 'paintObjects' ....................... PASS (15d4a0b8b77f24d9) 919069.9
< checking 'rmObjects' .......................... PASS (532e00b80736b3f0) 565.9
< checking 'reenumerate' ........................ PASS (532e00b80736b3f0) 565.9
< checking 'reenumerate' ........................ PASS (53954bb9151049f1) 832970.9
< checking 'computeFeatures' .................... PASS (74fe708668c9e3be) 3988895
< checking 'computeFeatures' .................... PASS (dfdbe9cdff74e039) 145634.3
< checking 'ocontour' ........................... PASS (63d189418364b4b8) 848253.8
< checking 'localCurvature' ..................... PASS (e3b73aad089aeb80) 847428.3
< checking 'normalize' .......................... PASS (a92e818f4e73c73a) 747801.4
< checking 'normalize' .......................... PASS (abefb6f2a1f94308) 809649.2
< checking 'gblur' .............................. PASS (997103fd0756733c) 761679.3
< checking 'filter2' ............................ PASS (3e400931e10a7c4a) 19130329
< checking 'medianFilter' ....................... PASS (98fcdf536fbd7323) 765141.6
< checking 'equalize' ........................... PASS (ca31fb19c115f140) 705546.8
< checking 'erode' .............................. PASS (87c34cd3ab434176) 908526.9
< checking 'dilate' ............................. PASS (6c93fac1f8c9cb29) 1072658
< checking 'opening' ............................ PASS (8655ad1e0550f18c) 985798.9
< checking 'closing' ............................ PASS (ea050dc3c7d5a983) 988727.9
< checking 'whiteTopHat' ........................ PASS (58d597df70d6d088) 3572.998
< checking 'blackTopHat' ........................ PASS (6ce59e41f02d4c9b) 7139.473
< checking 'selfComplementaryTopHat' ............ PASS (a8e77e0c7732da28) 1533178
< checking 'distmap' ............................ PASS (3f87bb08626b6535) 12740449
< checking 'watershed' .......................... PASS (1537ab2b5e366c26) 988518.9
< checking 'floodFill' .......................... PASS (0c770ac4aee91f2a) 765755.4
< checking 'fillHull' ........................... PASS (fa6323783aa5b800) 988518.9
< checking 'propagate' .......................... PASS (4d49fbc865fcc9f9) 26630579
< checking 'toRGB' .............................. PASS (47850896f9c930e8) 765760.9
< checking 'rgbImage' ........................... PASS (f5645d04cd0fe8b6) 3520680
< checking 'colormap' ........................... PASS (533aa45eacba8da0) 1816912
< checking 'combine' ............................ PASS (84017bde4a115c3d) 2960568
< checking 'combine' ............................ PASS (1957e3c7cf622693) 18119267
< checking 'tile' ............................... PASS (455f47d2d54808cb) 33061491
< checking 'untile' ............................. PASS (9a408e3ec431a525) 27788327
< checking 'abind' .............................. PASS (cd1fe636c56e5d47) 2960568
---
> new test (hash=7718e616f411c340)
> checking 'show' ............................... PASS (1a2c30323dd5a8ee) -0.1
> checking 'print' .............................. PASS (e9fad67b70709e2b) -0.1
> checking 'hist' ............................... PASS (596b544e7cd6f458) 130241.3
> checking '>' .................................. PASS (e72c38d763e5fabf) 988518.9
> checking '+' .................................. PASS (e38cf73f1c0c88a2) 1531522
> checking '/' .................................. PASS (df4e8bf818fc26fe) 382880.4
> checking '*' .................................. PASS (e38cf73f1c0c88a2) 1531522
> checking 'median' ............................. PASS (fc60ee4b14ba4a28) 0.5039216
> checking 'quantile' ........................... PASS (436f03b8c9c3ad0e) 10.10392
> checking 'Image' .............................. PASS (7718e616f411c340) 765760.9
> checking 'as.Image' ........................... PASS (7718e616f411c340) 765760.9
> checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
> checking 'imageData' .......................... PASS (19c51d4d9d30d60c) 765760.9
> checking 'imageData<-' ........................ PASS (7718e616f411c340) 765760.9
> checking 'as.raster' .......................... PASS (05c68b3f51ec838b) -0.1
> checking 'colorMode<-' ........................ PASS (733871e596e328df) 765760.9
> checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
> checking 'getFrames' .......................... PASS (681aab4c8a24c6c5) 765760.8
> checking 'display' ............................ PASS (bb2b4586191eb980) 333.3
> checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
> checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
> checking 'drawCircle' ......................... PASS (a6757bb66994b1f7) 782100.7
> checking '[' .................................. PASS (25a626878222798c) 1285.273
> checking 'resize' ............................. PASS (bb1209a84d6b3709) 2941770
> checking 'rotate' ............................. PASS (924fc66d1ec91d44) 1247487
> checking 'flip' ............................... PASS (828db3b8ad878bd6) 661525.2
> checking 'flop' ............................... PASS (f69b431f36c97abd) 768451.1
> checking 'translate' .......................... PASS (3eb2fe0d22e461ed) 820434.5
> checking 'affine' ............................. PASS (7a760844869cec92) 22238.15
> checking 'transpose' .......................... PASS (d438f72715d302ed) 652051.4
> checking 'thresh' ............................. PASS (8b3a72b493ab8540) 382924.9
> checking 'channel' ............................ PASS (3982766c7e1077b3) 162800.7
> checking 'otsu' ............................... PASS (ebd9ed7a0cf4831d) 0.03085937
> checking 'bwlabel' ............................ PASS (498723eb57bcca48) 832970.9
> checking 'colorLabels' ........................ PASS (ecbf282c48506ef2) 3692613
> checking 'stackObjects' ....................... PASS (e30de50cc1d8e117) 596493.9
> checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
> checking 'paintObjects' ....................... PASS (9b5026b178720a80) 919069.9
> checking 'rmObjects' .......................... PASS (e0ab50f8e544290a) 565.9
> checking 'reenumerate' ........................ PASS (e0ab50f8e544290a) 565.9
> checking 'reenumerate' ........................ PASS (498723eb57bcca48) 832970.9
> checking 'computeFeatures' .................... PASS (c1ff2e62e7bb8eee) 3989786
> checking 'computeFeatures' .................... PASS (4e7e75f941531854) 145634.3
> checking 'ocontour' ........................... PASS (ced9c409ca879dc9) 848253.8
> checking 'localCurvature' ..................... PASS (25e900bf67a8cdb0) 847428.3
> checking 'normalize' .......................... PASS (b8b2cfe4f431fc83) 747801.4
> checking 'normalize' .......................... PASS (3ee0aade2890ed53) 809649.2
> checking 'gblur' .............................. PASS (0c28ab262af637d1) 761679.3
> checking 'filter2' ............................ PASS (bf01322f9e0aed7a) 19130329
> checking 'medianFilter' ....................... PASS (189cf2d04b2316f5) 765141.6
> checking 'equalize' ........................... PASS (b525d614a289c5a3) 705546.8
> checking 'erode' .............................. PASS (84add15c6fa8ac14) 908526.9
> checking 'dilate' ............................. PASS (e99e1ecfd4ef49d3) 1072658
> checking 'opening' ............................ PASS (80d457c0bcd57e44) 985798.9
> checking 'closing' ............................ PASS (cc9339fed43d2c52) 988727.9
> checking 'whiteTopHat' ........................ PASS (25444773943cf26b) 3572.998
> checking 'blackTopHat' ........................ PASS (10fae7d8c0f86c96) 7139.473
> checking 'selfComplementaryTopHat' ............ PASS (2f97211e82aa8221) 1533178
> checking 'distmap' ............................ PASS (218b9e66643db8d3) 12740449
> checking 'watershed' .......................... PASS (6edd3aa33ad54089) 988518.9
> checking 'floodFill' .......................... PASS (228b47626610f8c9) 765755.4
> checking 'fillHull' ........................... PASS (e72c38d763e5fabf) 988518.9
> checking 'propagate' .......................... PASS (73d53b87d72f0409) 26630579
> checking 'toRGB' .............................. PASS (7718e616f411c340) 765760.9
> checking 'rgbImage' ........................... PASS (6df3c3d16757cdd6) 3520680
> checking 'colormap' ........................... PASS (8e7f90c18580cd50) 1816912
> checking 'combine' ............................ PASS (f156de3e1aff037c) 2960568
> checking 'combine' ............................ PASS (1bfd38ce66379070) 18119267
> checking 'tile' ............................... PASS (3f8e8f9b949597b4) 33061491
> checking 'untile' ............................. PASS (9f839c04542fa7e4) 27788327
> checking 'abind' .............................. PASS (a65f1e1e2d249be6) 2960568
544,615c544,615
< new test (hash=48f71cc8b0050cda)
< checking 'show' ............................... PASS (224dd1d656f350f6) -0.1
< checking 'print' .............................. PASS (a40af5685cc8269d) -0.1
< checking 'hist' ............................... PASS (0eedff7586a90289) 348464.1
< checking '>' .................................. PASS (37677cdd1723a762) 1058553
< checking '+' .................................. PASS (bff43005d7cf5baa) 4072301
< checking '/' .................................. PASS (075b1e2146d0c0c4) 1018075
< checking '*' .................................. PASS (bff43005d7cf5baa) 4072301
< checking 'median' ............................. PASS (87cf0535c43c036e) 0.2333333
< checking 'quantile' ........................... PASS (9277f475391c119f) 7.280392
< checking 'Image' .............................. PASS (48f71cc8b0050cda) 2036151
< checking 'as.Image' ........................... PASS (48f71cc8b0050cda) 2036151
< checking 'is.Image' ........................... PASS (c5cfdf6777477824) 0.9
< checking 'imageData' .......................... PASS (092c3ebec1ba6cba) 2036151
< checking 'imageData<-' ........................ PASS (48f71cc8b0050cda) 2036151
< checking 'as.raster' .......................... PASS (0e1e0f27a820e816) -0.1
< checking 'colorMode<-' ........................ PASS (f50e0963b48a2cc1) 2036151
< checking 'numberOfFrames' ..................... PASS (8e2352fb8e5e5114) 0.9
< checking 'getFrames' .......................... PASS (f21033753e0ff75f) 2036151
< checking 'display' ............................ PASS (347538c33b9ad85e) 306.3
< checking 'display' ............................ PASS (4a72ef17f0bfbfcd) -0.1
< checking 'image' .............................. PASS (4a72ef17f0bfbfcd) -0.1
< checking 'drawCircle' ......................... PASS (d55510e97af1fa3b) 2049936
< checking '[' .................................. PASS (b7b39e1dc868848e) 9950.096
< checking 'resize' ............................. PASS (5fa97b7a141ea096) 15155777
< checking 'rotate' ............................. PASS (bb8c420c87c69bd9) 4525312
< checking 'flip' ............................... PASS (fb21df964e612f05) 1977928
< checking 'flop' ............................... PASS (6075b887765d62c1) 2048664
< checking 'translate' .......................... PASS (f6fb6f5cca098a55) 2998417
< checking 'affine' ............................. PASS (c1f501e539afb0d9) 226067.6
< checking 'transpose' .......................... PASS (361d1659a2faa942) 1907377
< checking 'thresh' ............................. PASS (2340dc5bc89035a0) 954376.9
< checking 'channel' ............................ PASS (0b053d27b8ceadea) 257578.5
< checking 'otsu' ............................... PASS (8328b85a064115c8) 0.3316406
< checking 'bwlabel' ............................ PASS (2a53cf89b4a35c8a) 230329.9
< checking 'colorLabels' ........................ PASS (076e153870ae4bd1) 1920855
< checking 'stackObjects' ....................... PASS (2c3e1762984035ea) 712799.6
< checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
< checking 'paintObjects' ....................... PASS (8b7094dedac4a5ea) 2090128
< checking 'rmObjects' .......................... PASS (e82eefc2fff258bf) -0.1
< checking 'reenumerate' ........................ PASS (e82eefc2fff258bf) -0.1
< checking 'reenumerate' ........................ PASS (2a53cf89b4a35c8a) 230329.9
< checking 'computeFeatures' .................... PASS (1fe1266aa6159125) 746878.2
< checking 'computeFeatures' .................... PASS (50090732ff9f9962) 19422.3
< checking 'ocontour' ........................... PASS (647d51ebccc4030f) 117866.8
< checking 'localCurvature' ..................... PASS (4113d1dace095a0b) 116636.2
< checking 'normalize' .......................... PASS (ba670ee7628eadb4) 1788995
< checking 'normalize' .......................... PASS (02201ae4e6232a01) 1858155
< checking 'gblur' .............................. PASS (b5b0b076055fbf39) 2029979
< checking 'filter2' ............................ PASS (7f0c3c9e1ed84c32) 50878763
< checking 'medianFilter' ....................... PASS (e4487f529c0c8f64) 2034604
< checking 'equalize' ........................... PASS (aafea856234df7cf) 2942981
< checking 'erode' .............................. PASS (1668d070c32a3352) 830816.9
< checking 'dilate' ............................. PASS (70f0b97d44055dc4) 1339263
< checking 'opening' ............................ PASS (bf8703b54eaaf477) 1013295
< checking 'closing' ............................ PASS (2a44925702fbcb45) 1069405
< checking 'whiteTopHat' ........................ PASS (382c254a636d15be) 16585.63
< checking 'blackTopHat' ........................ PASS (17f9061f04410117) 22039.05
< checking 'selfComplementaryTopHat' ............ PASS (7345b102e7c10661) 4071763
< checking 'distmap' ............................ PASS (917c16e57cfe8663) 6038778
< checking 'watershed' .......................... PASS (7a21acc522ee0901) 1058553
< checking 'floodFill' .......................... PASS (22d2bfdee3f4347e) 2036854
< checking 'fillHull' ........................... PASS (37677cdd1723a762) 1058553
< checking 'propagate' .......................... PASS (311992f3f5e46ef3) 7755487
< checking 'toRGB' .............................. PASS (48f71cc8b0050cda) 2036151
< checking 'rgbImage' ........................... PASS (ee121a9652710512) 7617867
< checking 'colormap' ........................... PASS (7904c40deb5ac89a) 1657338
< checking 'combine' ............................ PASS (0996d92466ee854e) 8350133
< checking 'combine' ............................ PASS (7e54ded05ceace14) 52959073
< checking 'tile' ............................... PASS (2584fda7b98afd99) 107188639
< checking 'untile' ............................. PASS (a54c5217f194f8a7) 97994583
< checking 'abind' .............................. PASS (0996d92466ee854e) 8350133
---
> new test (hash=3884fe38962577a7)
> checking 'show' ............................... PASS (8331bd653405c3be) -0.1
> checking 'print' .............................. PASS (de22d3dc188680fd) -0.1
> checking 'hist' ............................... PASS (10b008981f19c77a) 348464.1
> checking '>' .................................. PASS (e6c8a64e9fff6055) 1058553
> checking '+' .................................. PASS (5bb860f09b56b4d9) 4072301
> checking '/' .................................. PASS (17b2c344ff60cf34) 1018075
> checking '*' .................................. PASS (5bb860f09b56b4d9) 4072301
> checking 'median' ............................. PASS (a9ae52973fed588b) 0.2333333
> checking 'quantile' ........................... PASS (e51be80ed6288f06) 7.280392
> checking 'Image' .............................. PASS (3884fe38962577a7) 2036151
> checking 'as.Image' ........................... PASS (3884fe38962577a7) 2036151
> checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
> checking 'imageData' .......................... PASS (1456dcb0ab2d690b) 2036151
> checking 'imageData<-' ........................ PASS (3884fe38962577a7) 2036151
> checking 'as.raster' .......................... PASS (abd1d3d0d6329777) -0.1
> checking 'colorMode<-' ........................ PASS (0aa63faa9d4e0838) 2036151
> checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
> checking 'getFrames' .......................... PASS (2ed277d7e69a05d2) 2036151
> checking 'display' ............................ PASS (3d646d4f07d194ba) 306.3
> checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
> checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
> checking 'drawCircle' ......................... PASS (5175a6622762681a) 2049936
> checking '[' .................................. PASS (c60784a663dd1761) 9950.096
> checking 'resize' ............................. PASS (fe9aa55b037def9d) 15155777
> checking 'rotate' ............................. PASS (2a6f5001ae7d116d) 4525312
> checking 'flip' ............................... PASS (192932ac94cae831) 1977928
> checking 'flop' ............................... PASS (55c97a05ee9ed805) 2048664
> checking 'translate' .......................... PASS (c866b3232cda2c68) 2998417
> checking 'affine' ............................. PASS (517c3559acf97cf4) 226067.6
> checking 'transpose' .......................... PASS (e6349d8cc35ed017) 1907377
> checking 'thresh' ............................. PASS (e98d9e4246c476a4) 954376.9
> checking 'channel' ............................ PASS (84d92148a5eda650) 257578.5
> checking 'otsu' ............................... PASS (6a2131f538a2a53e) 0.3316406
> checking 'bwlabel' ............................ PASS (2fa4cf414bbb7787) 230329.9
> checking 'colorLabels' ........................ PASS (b71e0c0d93c0ba5d) 1920855
> checking 'stackObjects' ....................... PASS (f30668520190ffed) 712799.6
> checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
> checking 'paintObjects' ....................... PASS (6a1ba970169d82ad) 2090128
> checking 'rmObjects' .......................... PASS (3705fc84a07dd0cd) -0.1
> checking 'reenumerate' ........................ PASS (3705fc84a07dd0cd) -0.1
> checking 'reenumerate' ........................ PASS (2fa4cf414bbb7787) 230329.9
> checking 'computeFeatures' .................... PASS (a33c53edd3cf8a46) 746878.2
> checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 19422.3
> checking 'ocontour' ........................... PASS (1be2808a87ee437f) 117866.8
> checking 'localCurvature' ..................... PASS (ad1fddb421e46506) 116636.2
> checking 'normalize' .......................... PASS (edb5f31f14cd540d) 1788995
> checking 'normalize' .......................... PASS (6a1005a2ed478c1e) 1858155
> checking 'gblur' .............................. PASS (c61849c1f4dc6d25) 2029979
> checking 'filter2' ............................ PASS (760ded68d0c55bfa) 50878763
> checking 'medianFilter' ....................... PASS (0b06f73d5aecad7d) 2034604
> checking 'equalize' ........................... PASS (2d4d0558bb48cbfc) 2942981
> checking 'erode' .............................. PASS (94112a39c70cd747) 830816.9
> checking 'dilate' ............................. PASS (a9fbe5f3b81787ec) 1339263
> checking 'opening' ............................ PASS (957aea2990d2caa1) 1013295
> checking 'closing' ............................ PASS (7af64e74f8e80dbb) 1069405
> checking 'whiteTopHat' ........................ PASS (d50f6d3e0e26602d) 16585.63
> checking 'blackTopHat' ........................ PASS (310953bdffbb07ee) 22039.05
> checking 'selfComplementaryTopHat' ............ PASS (dfefa629c102a00d) 4071763
> checking 'distmap' ............................ PASS (6c03a6a34b67eec0) 6038778
> checking 'watershed' .......................... PASS (61ebc564dd827878) 1058553
> checking 'floodFill' .......................... PASS (f537dd1499704563) 2036854
> checking 'fillHull' ........................... PASS (e6c8a64e9fff6055) 1058553
> checking 'propagate' .......................... PASS (7b81c961226b8218) 7755487
> checking 'toRGB' .............................. PASS (3884fe38962577a7) 2036151
> checking 'rgbImage' ........................... PASS (43e895266c1b7cae) 7617867
> checking 'colormap' ........................... PASS (972e374a8a23c0e1) 1657338
> checking 'combine' ............................ PASS (d56bf3140c7cd055) 8350133
> checking 'combine' ............................ PASS (b21bd2c702883543) 52959073
> checking 'tile' ............................... PASS (4f60a4ae167b4e6e) 107188639
> checking 'untile' ............................. PASS (05afb65e638c5769) 97994583
> checking 'abind' .............................. PASS (d56bf3140c7cd055) 8350133
623,694c623,694
< new test (hash=0dfc99a32eca6c75)
< checking 'show' ............................... PASS (dafa895e16b40940) -0.1
< checking 'print' .............................. PASS (1dd6ebc27d9cea77) -0.1
< checking 'hist' ............................... PASS (4d550d4c758200f9) 5855.343
< checking '>' .................................. PASS (0dfc99a32eca6c75) 1055560
< checking '+' .................................. PASS (de2c65071acbd149) 2111120
< checking '/' .................................. PASS (a4a10da152c2288c) 527779.9
< checking '*' .................................. PASS (de2c65071acbd149) 2111120
< checking 'median' ............................. PASS (0c72e13f2da056a7) -0.1
< checking 'quantile' ........................... PASS (51de3cb0579b1fa7) 8.9
< checking 'Image' .............................. PASS (2abf785fff59216a) 1055560
< checking 'as.Image' ........................... PASS (0dfc99a32eca6c75) 1055560
< checking 'is.Image' ........................... PASS (c5cfdf6777477824) 0.9
< checking 'imageData' .......................... PASS (e3c8e0148f6a4719) 1055560
< checking 'imageData<-' ........................ PASS (0dfc99a32eca6c75) 1055560
< checking 'as.raster' .......................... PASS (14c8b304499a1db2) -0.1
< checking 'colorMode<-' ........................ PASS (0dfc99a32eca6c75) 1055560
< checking 'numberOfFrames' ..................... PASS (47c6414be054e0d0) 1.9
< checking 'getFrames' .......................... PASS (7e972c640b9b852f) 916715.6
< checking 'display' ............................ PASS (626250b1adff3cb2) 285.3
< checking 'display' ............................ PASS (4a72ef17f0bfbfcd) -0.1
< checking 'image' .............................. PASS (4a72ef17f0bfbfcd) -0.1
< checking 'drawCircle' ......................... PASS (2c87a6f556ab6c8d) 1656514
< checking '[' .................................. PASS (2ef6b46107ddc598) 1889.9
< checking 'resize' ............................. PASS (5e22a297f1aaa672) 9108608
< checking 'rotate' ............................. PASS (d368a6f158e4a42d) 1600126
< checking 'flip' ............................... PASS (dded8d9c7c670d69) 714439.9
< checking 'flop' ............................... PASS (d4611b6572d52268) 1064092
< checking 'translate' .......................... PASS (4545c4961aced975) 1105982
< checking 'affine' ............................. PASS (b9ba81b3f9f1117b) 133467.8
< checking 'transpose' .......................... PASS (60241d37c5fff28e) 758083.9
< checking 'thresh' ............................. PASS (5f90f811f0ede222) 824497.9
< checking 'channel' ............................ PASS (0dfc99a32eca6c75) 1055560
< checking 'otsu' ............................... PASS (6ab30063c9cb4fd4) 1.4
< checking 'bwlabel' ............................ PASS (298b1cc69347d741) 1597368
< checking 'colorLabels' ........................ PASS (e04a2ac8541504d7) 5485361
< checking 'stackObjects' ....................... PASS (6b43eb7771b42140) 8889538
< checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
< checking 'paintObjects' ....................... PASS (8a38af2995ce8037) 834266.6
< checking 'rmObjects' .......................... PASS (26480ded39aa6e19) 1303423
< checking 'reenumerate' ........................ PASS (c80605c7f02da85a) 1244828
< checking 'reenumerate' ........................ PASS (298b1cc69347d741) 1597368
< checking 'computeFeatures' .................... PASS (68343f70d0d1737f) 416164140
< checking 'computeFeatures' .................... PASS (dfdbe9cdff74e039) 145634.3
< checking 'ocontour' ........................... PASS (4fb2389f9904a311) 836958.8
< checking 'localCurvature' ..................... PASS (2b74e1f8fbe5a7bb) 835041.5
< checking 'normalize' .......................... PASS (1ab59eb9157a66c6) 1055560
< checking 'normalize' .......................... PASS (1ab59eb9157a66c6) 1055560
< checking 'gblur' .............................. PASS (342ad29d21076375) 1037581
< checking 'filter2' ............................ PASS (1eb04c71e150cf47) 26149148
< checking 'medianFilter' ....................... PASS (e30e8be2936478c0) 1030730
< checking 'equalize' ........................... PASS (1ab59eb9157a66c6) 1055560
< checking 'erode' .............................. PASS (0f3e44fb76ab60a2) 617311.9
< checking 'dilate' ............................. PASS (02cad0bca5d24adc) 1591594
< checking 'opening' ............................ PASS (c2244cde8fad46a6) 861145.9
< checking 'closing' ............................ PASS (783b09b51e1dac61) 1188258
< checking 'whiteTopHat' ........................ PASS (15133662899d87a7) 148131.9
< checking 'blackTopHat' ........................ PASS (38c6e9d2a3359f3a) 202411.9
< checking 'selfComplementaryTopHat' ............ PASS (bd3b404b3e65d4a5) 2151192
< checking 'distmap' ............................ PASS (2c1bf601469a0408) 3856630
< checking 'watershed' .......................... PASS (99b0fcb0618a08a3) 1443978
< checking 'floodFill' .......................... PASS (eb581bf959e8205e) 2057384
< checking 'fillHull' ........................... PASS (162c9b15d71fc7cd) 1096352
< checking 'propagate' .......................... PASS (cbe3a7ff31614dc9) 1613920
< checking 'toRGB' .............................. PASS (81942d6f2bb0d146) 8499672
< checking 'rgbImage' ........................... PASS (c0a9c0a15efba438) 4777616
< checking 'colormap' ........................... PASS (3439b001d77ffd6e) 10283526
< checking 'combine' ............................ PASS (1fa85a553b6dbf99) 3888784
< checking 'combine' ............................ PASS (eafffae37810e5b9) 23054440
< checking 'tile' ............................... PASS (ed09cbf55843986b) 48846817
< checking 'untile' ............................. PASS (2eba92509b4a3f7d) 41221063
< checking 'abind' .............................. PASS (dd89c1ca231033b0) 3888784
---
> new test (hash=db12fa8044d98567)
> checking 'show' ............................... PASS (75018abdcca926f0) -0.1
> checking 'print' .............................. PASS (9bacee8faec96053) -0.1
> checking 'hist' ............................... PASS (f0f3640c0aa89c38) 5855.343
> checking '>' .................................. PASS (db12fa8044d98567) 1055560
> checking '+' .................................. PASS (0b5a21f5cc627e62) 2111120
> checking '/' .................................. PASS (bf2545eee0c6aa3e) 527779.9
> checking '*' .................................. PASS (0b5a21f5cc627e62) 2111120
> checking 'median' ............................. PASS (8396e8397399bb05) -0.1
> checking 'quantile' ........................... PASS (130a179fb028f1a7) 8.9
> checking 'Image' .............................. PASS (041d3981bcab3129) 1055560
> checking 'as.Image' ........................... PASS (db12fa8044d98567) 1055560
> checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
> checking 'imageData' .......................... PASS (6b02d87cd459ac19) 1055560
> checking 'imageData<-' ........................ PASS (db12fa8044d98567) 1055560
> checking 'as.raster' .......................... PASS (26cf978328d1a712) -0.1
> checking 'colorMode<-' ........................ PASS (db12fa8044d98567) 1055560
> checking 'numberOfFrames' ..................... PASS (161e41d6aa749739) 1.9
> checking 'getFrames' .......................... PASS (ce29246f73d959c3) 916715.6
> checking 'display' ............................ PASS (2fb2fcab54a4ea5a) 285.3
> checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
> checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
> checking 'drawCircle' ......................... PASS (1180c20b46fdaf4e) 1656514
> checking '[' .................................. PASS (2a55f6dafc492b42) 1889.9
> checking 'resize' ............................. PASS (211e86386b1010af) 9108608
> checking 'rotate' ............................. PASS (d67e39e3cb07d275) 1600126
> checking 'flip' ............................... PASS (fbb2a6f78f2cc7f1) 714439.9
> checking 'flop' ............................... PASS (f6825dda37058381) 1064092
> checking 'translate' .......................... PASS (8d027c3127938636) 1105982
> checking 'affine' ............................. PASS (a6e552f84324fe21) 133467.8
> checking 'transpose' .......................... PASS (eeeb148d04107340) 758083.9
> checking 'thresh' ............................. PASS (5b7b2d141f385123) 824497.9
> checking 'channel' ............................ PASS (db12fa8044d98567) 1055560
> checking 'otsu' ............................... PASS (69c60dc99d5066e3) 1.4
> checking 'bwlabel' ............................ PASS (10092f8e4256496b) 1597368
> checking 'colorLabels' ........................ PASS (ebf6961f64378f97) 5485361
> checking 'stackObjects' ....................... PASS (d1d99850ff4d6d38) 8889538
> checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
> checking 'paintObjects' ....................... PASS (8c5ef6f490aa8762) 834266.6
> checking 'rmObjects' .......................... PASS (0a1cd72f8d3c03e8) 1303423
> checking 'reenumerate' ........................ PASS (df75276eeec5813d) 1244828
> checking 'reenumerate' ........................ PASS (10092f8e4256496b) 1597368
> checking 'computeFeatures' .................... PASS (1bf064e6a11f2410) 416164140
> checking 'computeFeatures' .................... PASS (4e7e75f941531854) 145634.3
> checking 'ocontour' ........................... PASS (9f7d90d6312e32f3) 836958.8
> checking 'localCurvature' ..................... PASS (477746e4fee34aeb) 835041.5
> checking 'normalize' .......................... PASS (eea76285d45436f7) 1055560
> checking 'normalize' .......................... PASS (eea76285d45436f7) 1055560
> checking 'gblur' .............................. PASS (9224b720f9d00006) 1037581
> checking 'filter2' ............................ PASS (637287a5df76a79d) 26149148
> checking 'medianFilter' ....................... PASS (ed8d722e63a36a34) 1030730
> checking 'equalize' ........................... PASS (eea76285d45436f7) 1055560
> checking 'erode' .............................. PASS (54ccd3aba098da92) 617311.9
> checking 'dilate' ............................. PASS (3f0aed5a551e26b5) 1591594
> checking 'opening' ............................ PASS (ae3c29b4498904c5) 861145.9
> checking 'closing' ............................ PASS (2e26e13058dee387) 1188258
> checking 'whiteTopHat' ........................ PASS (28bbffedc1bcb297) 148131.9
> checking 'blackTopHat' ........................ PASS (a862285882d4249e) 202411.9
> checking 'selfComplementaryTopHat' ............ PASS (92483d40b14844db) 2151192
> checking 'distmap' ............................ PASS (766610b2223767b0) 3856630
> checking 'watershed' .......................... PASS (eaba5359a5afa00e) 1443978
> checking 'floodFill' .......................... PASS (0db2bbd3a6d9a773) 2057384
> checking 'fillHull' ........................... PASS (ccded36693237a0e) 1096352
> checking 'propagate' .......................... PASS (e3c3ba3dd998f78f) 1613920
> checking 'toRGB' .............................. PASS (a594b4f9b88125f1) 8499672
> checking 'rgbImage' ........................... PASS (172b07d65c57f496) 4777616
> checking 'colormap' ........................... PASS (a6b9bc2f3472cbee) 10283526
> checking 'combine' ............................ PASS (f13e4c8ca8445cd0) 3888784
> checking 'combine' ............................ PASS (d8a9b6cf082a9146) 23054440
> checking 'tile' ............................... PASS (4c3d7086d0c2c786) 48846817
> checking 'untile' ............................. PASS (65365043e983ec58) 41221063
> checking 'abind' .............................. PASS (af0697002f77c709) 3888784
701,772c701,772
< new test (hash=43dbe82e1c3a72c7)
< checking 'show' ............................... PASS (0ae4482e10a26740) -0.1
< checking 'print' .............................. PASS (e0ed7a93a4106da4) -0.1
< checking 'hist' ............................... PASS (a354f3d508f1a243) 492113.2
< checking '>' .................................. PASS (14c85e9c6a190efd) 2013322
< checking '+' .................................. PASS (20f87e97112cc44e) 4709417
< checking '/' .................................. PASS (bd0a681d680da84f) 1177354
< checking '*' .................................. PASS (20f87e97112cc44e) 4709417
< checking 'median' ............................. PASS (d97d8924cf85a8a5) 0.3823529
< checking 'quantile' ........................... PASS (f18a831d6b8056b5) 8.139216
< checking 'Image' .............................. PASS (43dbe82e1c3a72c7) 2354709
< checking 'as.Image' ........................... PASS (43dbe82e1c3a72c7) 2354709
< checking 'is.Image' ........................... PASS (c5cfdf6777477824) 0.9
< checking 'imageData' .......................... PASS (acefc274aafca2a3) 2354709
< checking 'imageData<-' ........................ PASS (43dbe82e1c3a72c7) 2354709
< checking 'as.raster' .......................... PASS (dedc569bb4c39389) -0.1
< checking 'colorMode<-' ........................ PASS (78a054c14130e8cc) 2354709
< checking 'numberOfFrames' ..................... PASS (47c6414be054e0d0) 1.9
< checking 'getFrames' .......................... PASS (a5288dbe65f25cd6) 1440422
< checking 'display' ............................ PASS (cfc06c54b45f8f0e) 239.3
< checking 'display' ............................ PASS (4a72ef17f0bfbfcd) -0.1
< checking 'image' .............................. PASS (4a72ef17f0bfbfcd) -0.1
< checking 'drawCircle' ......................... PASS (ad1803d8fa4af078) 2650006
< checking '[' .................................. PASS (89ddefa5b38fe4f0) 40701.82
< checking 'resize' ............................. PASS (e98e16e095f09d8b) 76725662
< checking 'rotate' ............................. PASS (c06b816a74a85930) 4140744
< checking 'flip' ............................... PASS (810a3583c91cb31c) 2309692
< checking 'flop' ............................... PASS (877a43e063101c32) 2358658
< checking 'translate' .......................... PASS (08a04d76fd84f8a9) 3393923
< checking 'affine' ............................. PASS (1d7cc91f3ca03a90) 301692.6
< checking 'transpose' .......................... PASS (6b92009904695f08) 2303263
< checking 'thresh' ............................. PASS (80fc6f84d1721b6c) 1549362
< checking 'channel' ............................ PASS (29a2809472eaaaa2) 287206.2
< checking 'otsu' ............................... PASS (c1466d3e9ed225ff) 1.370703
< checking 'bwlabel' ............................ PASS (23f3e658e40843e6) 360413.9
< checking 'colorLabels' ........................ PASS (2136b39e576c2fd8) 3039066
< checking 'stackObjects' ....................... PASS (f3ad7ae0d2a6cc85) 2472601
< checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
< checking 'paintObjects' ....................... PASS (cc901b1d73d052c3) 2558300
< checking 'rmObjects' .......................... PASS (f5c9853583c7bbd8) 261782.9
< checking 'reenumerate' ........................ PASS (f5c9853583c7bbd8) 261782.9
< checking 'reenumerate' ........................ PASS (23f3e658e40843e6) 360413.9
< checking 'computeFeatures' .................... PASS (8fc45045f55bbaf2) 749353.1
< checking 'computeFeatures' .................... PASS (50090732ff9f9962) 19422.3
< checking 'ocontour' ........................... PASS (86cde5e313b695a0) 107408.8
< checking 'localCurvature' ..................... PASS (61ebfebadd0bc3bc) 106275.7
< checking 'normalize' .......................... PASS (ce655ec7ea73b99e) 2693244
< checking 'normalize' .......................... PASS (5ddeb05eddf25516) 2315924
< checking 'gblur' .............................. PASS (4c4c90b677964b7f) 2349701
< checking 'filter2' ............................ PASS (dda2f4478bde8e69) 58841710
< checking 'medianFilter' ....................... PASS (b92b17b3a8f23f6f) 2352447
< checking 'equalize' ........................... PASS (721056a0c7381c37) 2616480
< checking 'erode' .............................. PASS (046f720832faefd3) 1547948
< checking 'dilate' ............................. PASS (2b4adac0ed5b574a) 2604996
< checking 'opening' ............................ PASS (00b2b73e7d165898) 1919386
< checking 'closing' ............................ PASS (5418d86566ce96d6) 2038196
< checking 'whiteTopHat' ........................ PASS (cbde5539090bf855) 12437.36
< checking 'blackTopHat' ........................ PASS (974cab12d6071583) 19780.97
< checking 'selfComplementaryTopHat' ............ PASS (a90ee1eecd2ff9a2) 4711722
< checking 'distmap' ............................ PASS (9f25a778bc97481a) 10836360
< checking 'watershed' .......................... PASS (7a09d7342dc0f1a0) 2013322
< checking 'floodFill' .......................... PASS (e702abd07a6fe6f5) 2355706
< checking 'fillHull' ........................... PASS (14c85e9c6a190efd) 2013322
< checking 'propagate' .......................... PASS (36f86ec18247ef6b) 11618104
< checking 'toRGB' .............................. PASS (43dbe82e1c3a72c7) 2354709
< checking 'rgbImage' ........................... PASS (3cc5363ae5d00743) 12071186
< checking 'colormap' ........................... PASS (3db20420c586b1cb) 2273276
< checking 'combine' ............................ PASS (f5feec2890bcd950) 9516503
< checking 'combine' ............................ PASS (cb08edf6001e293c) 59844403
< checking 'tile' ............................... PASS (2b989ec77441d03c) 114300809
< checking 'untile' ............................. PASS (4d221c39718805d7) 105862114
< checking 'abind' .............................. PASS (8bd8712a3397bb8d) 9516503
---
> new test (hash=290d7a45d7468e5f)
> checking 'show' ............................... PASS (78a7303aa046067b) -0.1
> checking 'print' .............................. PASS (9aaf686697ac72be) -0.1
> checking 'hist' ............................... PASS (b01a7d139c82f457) 492113.2
> checking '>' .................................. PASS (1f65757da86f51b3) 2013322
> checking '+' .................................. PASS (86bdea7870f6d0cc) 4709417
> checking '/' .................................. PASS (c3533150260f42c4) 1177354
> checking '*' .................................. PASS (86bdea7870f6d0cc) 4709417
> checking 'median' ............................. PASS (06af3e4c86ccda6d) 0.3823529
> checking 'quantile' ........................... PASS (11ef7960975f6975) 8.139216
> checking 'Image' .............................. PASS (290d7a45d7468e5f) 2354709
> checking 'as.Image' ........................... PASS (290d7a45d7468e5f) 2354709
> checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
> checking 'imageData' .......................... PASS (1936bbf08b457bab) 2354709
> checking 'imageData<-' ........................ PASS (290d7a45d7468e5f) 2354709
> checking 'as.raster' .......................... PASS (da1c028f359bf00b) -0.1
> checking 'colorMode<-' ........................ PASS (7856ef3bde7528ce) 2354709
> checking 'numberOfFrames' ..................... PASS (161e41d6aa749739) 1.9
> checking 'getFrames' .......................... PASS (f0d9427233f46fbb) 1440422
> checking 'display' ............................ PASS (bc877f5317c575b2) 239.3
> checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
> checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
> checking 'drawCircle' ......................... PASS (ad8f0dc0cad6885c) 2650006
> checking '[' .................................. PASS (144b12c39a99e2bc) 40701.82
> checking 'resize' ............................. PASS (dd96ecc9ed75e744) 76725662
> checking 'rotate' ............................. PASS (19319de30582c1d6) 4140744
> checking 'flip' ............................... PASS (91c7918c52fe8718) 2309692
> checking 'flop' ............................... PASS (49ae0fb3bef587c5) 2358658
> checking 'translate' .......................... PASS (a8fcd75113ffb2d2) 3393923
> checking 'affine' ............................. PASS (592877c7d17e1d22) 301692.6
> checking 'transpose' .......................... PASS (a42245132dbea662) 2303263
> checking 'thresh' ............................. PASS (167470821b508c29) 1549362
> checking 'channel' ............................ PASS (d4dd2cc593776db0) 287206.2
> checking 'otsu' ............................... PASS (2ff953970aa01423) 1.370703
> checking 'bwlabel' ............................ PASS (404699231a09f479) 360413.9
> checking 'colorLabels' ........................ PASS (4742967f9e3ced6e) 3039066
> checking 'stackObjects' ....................... PASS (71587dec63927412) 2472601
> checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
> checking 'paintObjects' ....................... PASS (0daa597dbe10a6cd) 2558300
> checking 'rmObjects' .......................... PASS (ea36bf2e51776461) 261782.9
> checking 'reenumerate' ........................ PASS (ea36bf2e51776461) 261782.9
> checking 'reenumerate' ........................ PASS (404699231a09f479) 360413.9
> checking 'computeFeatures' .................... PASS (151a0d98d309d0b1) 749353.1
> checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 19422.3
> checking 'ocontour' ........................... PASS (20fad83d539e2372) 107408.8
> checking 'localCurvature' ..................... PASS (469cd750daa03946) 106275.7
> checking 'normalize' .......................... PASS (4484b1dbbf34c675) 2693244
> checking 'normalize' .......................... PASS (27680837000f1ded) 2315924
> checking 'gblur' .............................. PASS (fc2147343f5faed5) 2349701
> checking 'filter2' ............................ PASS (958b84b9c0054384) 58841710
> checking 'medianFilter' ....................... PASS (8ccc036255fe88d9) 2352447
> checking 'equalize' ........................... PASS (e7f99b2a8483f2d3) 2616480
> checking 'erode' .............................. PASS (16554ca32b165307) 1547948
> checking 'dilate' ............................. PASS (560c069e5292fdc9) 2604996
> checking 'opening' ............................ PASS (592d8ab4156490aa) 1919386
> checking 'closing' ............................ PASS (c57a6175329f5e45) 2038196
> checking 'whiteTopHat' ........................ PASS (6938d64e59a77fe1) 12437.36
> checking 'blackTopHat' ........................ PASS (8fbaad8a000d91c5) 19780.97
> checking 'selfComplementaryTopHat' ............ PASS (b11bd64d03fe29b9) 4711722
> checking 'distmap' ............................ PASS (708df2d4560d23a7) 10836360
> checking 'watershed' .......................... PASS (4aa1432f01914277) 2013322
> checking 'floodFill' .......................... PASS (02926422d15cf3c2) 2355706
> checking 'fillHull' ........................... PASS (1f65757da86f51b3) 2013322
> checking 'propagate' .......................... PASS (1656991af484107e) 11618104
> checking 'toRGB' .............................. PASS (290d7a45d7468e5f) 2354709
> checking 'rgbImage' ........................... PASS (98de7e0def0bab8b) 12071186
> checking 'colormap' ........................... PASS (0798dea20c907720) 2273276
> checking 'combine' ............................ PASS (579971440faf3f11) 9516503
> checking 'combine' ............................ PASS (fb7944257dfefb91) 59844403
> checking 'tile' ............................... PASS (e594265685cdf3aa) 114300809
> checking 'untile' ............................. PASS (5b25f3b7fc0df1b3) 105862114
> checking 'abind' .............................. PASS (a413703585d2e713) 9516503
779,850c779,850
< new test (hash=799480d8d96438b2)
< checking 'show' ............................... PASS (c5619352b713b97a) -0.1
< checking 'print' .............................. PASS (730e516d39ebdcb9) -0.1
< checking 'hist' ............................... PASS (0160ed3f9dd81390) 229030.4
< checking '>' .................................. PASS (74c61a4c56fd955c) 1541186
< checking '+' .................................. PASS (6a3eb99196a6e0c3) 4466272
< checking '/' .................................. PASS (935de373d737698f) 1116568
< checking '*' .................................. PASS (6a3eb99196a6e0c3) 4466272
< checking 'median' ............................. PASS (d97d8924cf85a8a5) 0.3823529
< checking 'quantile' ........................... PASS (f18a831d6b8056b5) 8.139216
< checking 'Image' .............................. PASS (140ae9b9e0536480) 2233136
< checking 'as.Image' ........................... PASS (799480d8d96438b2) 2233136
< checking 'is.Image' ........................... PASS (c5cfdf6777477824) 0.9
< checking 'imageData' .......................... PASS (f8da3e1ffbd4ce67) 2233136
< checking 'imageData<-' ........................ PASS (799480d8d96438b2) 2233136
< checking 'as.raster' .......................... PASS (c93aaa60d90967a4) -0.1
< checking 'colorMode<-' ........................ PASS (799480d8d96438b2) 2233136
< checking 'numberOfFrames' ..................... PASS (e57a146deb1262fb) 5.9
< checking 'getFrames' .......................... PASS (3bd24aa4207f0c89) 1229859
< checking 'display' ............................ PASS (7b4df230f1f50d6a) 256.3
< checking 'display' ............................ PASS (4a72ef17f0bfbfcd) -0.1
< checking 'image' .............................. PASS (4a72ef17f0bfbfcd) -0.1
< checking 'drawCircle' ......................... PASS (7f07f83a57d91d18) 2502013
< checking '[' .................................. PASS (db6a774290de96a7) 41200.75
< checking 'resize' ............................. PASS (162900c4d68f18ef) 72772706
< checking 'rotate' ............................. PASS (461a74661ede03a2) 3978266
< checking 'flip' ............................... PASS (4e1f9b766e32d689) 2296325
< checking 'flop' ............................... PASS (4c36897a8744d3dd) 2231772
< checking 'translate' .......................... PASS (1bc68ba412b5ac8d) 3827517
< checking 'affine' ............................. PASS (2ddfca6e7d25b608) 219714.6
< checking 'transpose' .......................... PASS (e0b146d3092f86de) 2284582
< checking 'thresh' ............................. PASS (a6eb16986d255449) 1426674
< checking 'channel' ............................ PASS (799480d8d96438b2) 2233136
< checking 'otsu' ............................... PASS (0ac1a37e8d92fca2) 9.425391
< checking 'bwlabel' ............................ PASS (a7ce281fc9236d07) 2016822
< checking 'colorLabels' ........................ PASS (ea86f9c1039117cf) 15071536
< checking 'stackObjects' ....................... PASS (6c794ac71abbf400) 2575847
< checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
< checking 'paintObjects' ....................... PASS (a61b14e7c6a56f44) 2379341
< checking 'rmObjects' .......................... PASS (1f1da17d9695481f) 1934575
< checking 'reenumerate' ........................ PASS (1f1da17d9695481f) 1934575
< checking 'reenumerate' ........................ PASS (a7ce281fc9236d07) 2016822
< checking 'computeFeatures' .................... PASS (8056f4885b43ba71) 734993.9
< checking 'computeFeatures' .................... PASS (50090732ff9f9962) 19422.3
< checking 'ocontour' ........................... PASS (c3467ffca55b567e) 118072.8
< checking 'localCurvature' ..................... PASS (c2e5b0512504cf2b) 117246.2
< checking 'normalize' .......................... PASS (ffb2c6f2e9456c82) 2526618
< checking 'normalize' .......................... PASS (76b48a6eb4e0efc2) 2163958
< checking 'gblur' .............................. PASS (e8533fd2079f7658) 2237219
< checking 'filter2' ............................ PASS (fcd2c0d8dd56967c) 56904871
< checking 'medianFilter' ....................... PASS (8792be4c6105d68a) 2231438
< checking 'equalize' ........................... PASS (36e6b2504cc19bb9) 2447139
< checking 'erode' .............................. PASS (c3503d68ad771f8a) 1121204
< checking 'dilate' ............................. PASS (bdbfcf0fb3209a4f) 2104588
< checking 'opening' ............................ PASS (370781133c8a06a0) 1451050
< checking 'closing' ............................ PASS (dbc6f3a18cc68c33) 1569448
< checking 'whiteTopHat' ........................ PASS (6b7e05a31bbfd6f6) 12004.54
< checking 'blackTopHat' ........................ PASS (41695f50d5c9a326) 20296.87
< checking 'selfComplementaryTopHat' ............ PASS (97aed475b3ab8ab9) 4469404
< checking 'distmap' ............................ PASS (186c9727f67ccd6b) 7464344
< checking 'watershed' .......................... PASS (21cc1e7d9b206802) 1541186
< checking 'floodFill' .......................... PASS (f780b1699f91037b) 2234521
< checking 'fillHull' ........................... PASS (74c61a4c56fd955c) 1541186
< checking 'propagate' .......................... PASS (45a6e2970cf3464e) 8948876
< checking 'toRGB' .............................. PASS (a573eaa33ed3cb8a) 20279146
< checking 'rgbImage' ........................... PASS (862f2be000f8c625) 10796552
< checking 'colormap' ........................... PASS (f90fc23499233240) 22585273
< checking 'combine' ............................ PASS (858e3b5e99c559c0) 8992851
< checking 'combine' ............................ PASS (e34d63c4d231be5a) 56431472
< checking 'tile' ............................... PASS (76fecef737d06abf) 72664167
< checking 'untile' ............................. PASS (0c9f82c009e2a842) 60048605
< checking 'abind' .............................. PASS (374ace8453841a89) 9273358
---
> new test (hash=2a321f78219fa026)
> checking 'show' ............................... PASS (3de182583a8c2cf2) -0.1
> checking 'print' .............................. PASS (05d1cebf84274f35) -0.1
> checking 'hist' ............................... PASS (885aba01ae2954f5) 229030.4
> checking '>' .................................. PASS (c15b137f0122c2ee) 1541186
> checking '+' .................................. PASS (2951b29fcfadda51) 4466272
> checking '/' .................................. PASS (b0a06579c4ef390d) 1116568
> checking '*' .................................. PASS (2951b29fcfadda51) 4466272
> checking 'median' ............................. PASS (06af3e4c86ccda6d) 0.3823529
> checking 'quantile' ........................... PASS (11ef7960975f6975) 8.139216
> checking 'Image' .............................. PASS (e6ae9fe3a69fec2c) 2233136
> checking 'as.Image' ........................... PASS (2a321f78219fa026) 2233136
> checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
> checking 'imageData' .......................... PASS (6a221a6a2cec815a) 2233136
> checking 'imageData<-' ........................ PASS (2a321f78219fa026) 2233136
> checking 'as.raster' .......................... PASS (73a5fd711e0edd14) -0.1
> checking 'colorMode<-' ........................ PASS (2a321f78219fa026) 2233136
> checking 'numberOfFrames' ..................... PASS (d9914b6bdfe88a1d) 5.9
> checking 'getFrames' .......................... PASS (c2a08dc890b333e2) 1229859
> checking 'display' ............................ PASS (d28e3e75eed04056) 256.3
> checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
> checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
> checking 'drawCircle' ......................... PASS (d4dbcf7b516a28b0) 2502013
> checking '[' .................................. PASS (efc391fc4ded377e) 41200.75
> checking 'resize' ............................. PASS (5ab5e219e21b7d77) 72772706
> checking 'rotate' ............................. PASS (5ea8cc41d39fe2c4) 3978266
> checking 'flip' ............................... PASS (2578de2eb711ac89) 2296325
> checking 'flop' ............................... PASS (c21acaf425029919) 2231772
> checking 'translate' .......................... PASS (74e4014bf39793e1) 3827517
> checking 'affine' ............................. PASS (76f6b18d2cb7c9c2) 219714.6
> checking 'transpose' .......................... PASS (3b5dcc82ff30daf8) 2284582
> checking 'thresh' ............................. PASS (3a92d48cd68a67e8) 1426674
> checking 'channel' ............................ PASS (2a321f78219fa026) 2233136
> checking 'otsu' ............................... PASS (2cdec937ebdb0543) 9.425391
> checking 'bwlabel' ............................ PASS (f698416417dde49c) 2016822
> checking 'colorLabels' ........................ PASS (b07a31035fc451d5) 15071536
> checking 'stackObjects' ....................... PASS (8e5b00026f507a11) 2575847
> checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
> checking 'paintObjects' ....................... PASS (63b2ef8ac8682f98) 2379341
> checking 'rmObjects' .......................... PASS (056669f72385f506) 1934575
> checking 'reenumerate' ........................ PASS (056669f72385f506) 1934575
> checking 'reenumerate' ........................ PASS (f698416417dde49c) 2016822
> checking 'computeFeatures' .................... PASS (53798e843cdbfa9f) 734993.9
> checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 19422.3
> checking 'ocontour' ........................... PASS (3a230e30e8d15bee) 118072.8
> checking 'localCurvature' ..................... PASS (a1d19191deda947d) 117246.2
> checking 'normalize' .......................... PASS (85d2a91256ddfdaa) 2526618
> checking 'normalize' .......................... PASS (4accf817a36301dc) 2163958
> checking 'gblur' .............................. PASS (c2c22f114f9ac87d) 2237219
> checking 'filter2' ............................ PASS (0245e31021e7583c) 56904871
> checking 'medianFilter' ....................... PASS (24f248c2c56e7772) 2231438
> checking 'equalize' ........................... PASS (97693dcd997265d1) 2447139
> checking 'erode' .............................. PASS (5b04187576514eec) 1121204
> checking 'dilate' ............................. PASS (4897aaa0d40c4fb8) 2104588
> checking 'opening' ............................ PASS (cb86eac9754dbac1) 1451050
> checking 'closing' ............................ PASS (13b4d846ef6a77dd) 1569448
> checking 'whiteTopHat' ........................ PASS (1c856cc6a52ed865) 12004.54
> checking 'blackTopHat' ........................ PASS (f74244f5c4295d35) 20296.87
> checking 'selfComplementaryTopHat' ............ PASS (f23286411d6929f7) 4469404
> checking 'distmap' ............................ PASS (ff3b2754a2aa8eb3) 7464344
> checking 'watershed' .......................... PASS (cd9ef36f457c5d89) 1541186
> checking 'floodFill' .......................... PASS (60d288f662756f97) 2234521
> checking 'fillHull' ........................... PASS (c15b137f0122c2ee) 1541186
> checking 'propagate' .......................... PASS (503cd7ed6238770e) 8948876
> checking 'toRGB' .............................. PASS (5a32f2aceec9a146) 20279146
> checking 'rgbImage' ........................... PASS (19e0ea95d787d11c) 10796552
> checking 'colormap' ........................... PASS (62fb056f168823de) 22585273
> checking 'combine' ............................ PASS (67fe5c370ca3a18d) 8992851
> checking 'combine' ............................ PASS (41f451bdd6a63a8f) 56431472
> checking 'tile' ............................... PASS (0581a6216e8e50e0) 72664167
> checking 'untile' ............................. PASS (4e208afef7f298bd) 60048605
> checking 'abind' .............................. PASS (e3feb875241cebc2) 9273358
857,928c857,928
< new test (hash=7d417e13c93c2396)
< checking 'show' ............................... PASS (37c1cb96896bf3e0) -0.1
< checking 'print' .............................. PASS (de0939c4d4190bf4) -0.1
< checking 'hist' ............................... PASS (0160ed3f9dd81390) 229030.4
< checking '>' .................................. PASS (7fdd981ad6aaf9c7) 1541186
< checking '+' .................................. PASS (1563be82d52357de) 4466272
< checking '/' .................................. PASS (1b7b8823e0a52420) 1116568
< checking '*' .................................. PASS (1563be82d52357de) 4466272
< checking 'median' ............................. PASS (d97d8924cf85a8a5) 0.3823529
< checking 'quantile' ........................... PASS (f18a831d6b8056b5) 8.139216
< checking 'Image' .............................. PASS (140ae9b9e0536480) 2233136
< checking 'as.Image' ........................... PASS (799480d8d96438b2) 2233136
< checking 'is.Image' ........................... PASS (c5cfdf6777477824) 0.9
< checking 'imageData' .......................... PASS (f8da3e1ffbd4ce67) 2233136
< checking 'imageData<-' ........................ PASS (7d417e13c93c2396) 2233136
< checking 'as.raster' .......................... PASS (c93aaa60d90967a4) -0.1
< checking 'colorMode<-' ........................ PASS (7d417e13c93c2396) 2233136
< checking 'numberOfFrames' ..................... PASS (e57a146deb1262fb) 5.9
< checking 'getFrames' .......................... PASS (b16a0686a4bcc89d) 1229859
< checking 'display' ............................ PASS (7b4df230f1f50d6a) 256.3
< checking 'display' ............................ PASS (4a72ef17f0bfbfcd) -0.1
< checking 'image' .............................. PASS (4a72ef17f0bfbfcd) -0.1
< checking 'drawCircle' ......................... PASS (cc0ffdd3e20b8bc6) 2502013
< checking '[' .................................. PASS (e8ed53e7ac44d57e) 41200.75
< checking 'resize' ............................. PASS (6109906558547111) 72772706
< checking 'rotate' ............................. PASS (cc7d8d9f74f632f3) 3978266
< checking 'flip' ............................... PASS (a20a3ceae1cf4860) 2296325
< checking 'flop' ............................... PASS (154a86c907bf3875) 2231772
< checking 'translate' .......................... PASS (b0b535537c33ea71) 3827517
< checking 'affine' ............................. PASS (8364e028bd59e0e5) 219714.6
< checking 'transpose' .......................... PASS (4662cf15af9ffed4) 2284582
< checking 'thresh' ............................. PASS (f55dde87036b1ac4) 1426674
< checking 'channel' ............................ PASS (7d417e13c93c2396) 2233136
< checking 'otsu' ............................... PASS (0ac1a37e8d92fca2) 9.425391
< checking 'bwlabel' ............................ PASS (09aee993ab4d9f10) 2016822
< checking 'colorLabels' ........................ PASS (4ab0dd56398e4b72) 15969784
< checking 'stackObjects' ....................... PASS (098725e1c6ccea4d) 2575847
< checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
< checking 'paintObjects' ....................... PASS (8a5b073d9bae826b) 2379341
< checking 'rmObjects' .......................... PASS (8f02d0fa2f4fcc84) 1934575
< checking 'reenumerate' ........................ PASS (8f02d0fa2f4fcc84) 1934575
< checking 'reenumerate' ........................ PASS (09aee993ab4d9f10) 2016822
< checking 'computeFeatures' .................... PASS (8056f4885b43ba71) 734993.9
< checking 'computeFeatures' .................... PASS (50090732ff9f9962) 19422.3
< checking 'ocontour' ........................... PASS (c3467ffca55b567e) 118072.8
< checking 'localCurvature' ..................... PASS (c2e5b0512504cf2b) 117246.2
< checking 'normalize' .......................... PASS (6d7b1e26a9f5c1d7) 2526618
< checking 'normalize' .......................... PASS (60c18968b480bed1) 2163958
< checking 'gblur' .............................. PASS (de0a0d14d96b29ff) 2237219
< checking 'filter2' ............................ PASS (86e3bd89a43c1988) 56904871
< checking 'medianFilter' ....................... PASS (0509e5ca92b339b9) 2231438
< checking 'equalize' ........................... PASS (e6a78960f7abe096) 2447139
< checking 'erode' .............................. PASS (85bbcd9bc8904b33) 1121204
< checking 'dilate' ............................. PASS (76e1e639e0d94b77) 2104588
< checking 'opening' ............................ PASS (f1fb32c047c57051) 1451050
< checking 'closing' ............................ PASS (9da5184c566c05a1) 1569448
< checking 'whiteTopHat' ........................ PASS (d76f76c59299f4ad) 12004.54
< checking 'blackTopHat' ........................ PASS (048eba3e008a8e59) 20296.87
< checking 'selfComplementaryTopHat' ............ PASS (4395bf239d8f1547) 4469404
< checking 'distmap' ............................ PASS (117ff12dedbbc61d) 7464344
< checking 'watershed' .......................... PASS (ed7ef9e2dac3efee) 1541186
< checking 'floodFill' .......................... PASS (24a9d26dec0292f6) 2234521
< checking 'fillHull' ........................... PASS (7fdd981ad6aaf9c7) 1541186
< checking 'propagate' .......................... PASS (535d4f22991691fc) 8948876
< checking 'toRGB' .............................. PASS (39e898d5b51450a5) 20279146
< checking 'rgbImage' ........................... PASS (732fbb1ad737ca56) 10796552
< checking 'colormap' ........................... PASS (3e9c72334d682581) 22585273
< checking 'combine' ............................ PASS (679c23a11e4e7303) 8992851
< checking 'combine' ............................ PASS (e22de431d55846ed) 56431472
< checking 'tile' ............................... PASS (0db623d7cf758736) 72664167
< checking 'untile' ............................. PASS (5ef8d21f233a5027) 60048605
< checking 'abind' .............................. PASS (6a36273c2cf1181c) 9273358
---
> new test (hash=9b67f57c77f74d34)
> checking 'show' ............................... PASS (63597c3473b56977) -0.1
> checking 'print' .............................. PASS (1cd88fa9e1ff084e) -0.1
> checking 'hist' ............................... PASS (885aba01ae2954f5) 229030.4
> checking '>' .................................. PASS (8213f4f8b30b3c46) 1541186
> checking '+' .................................. PASS (d9da0200176ead52) 4466272
> checking '/' .................................. PASS (c5360d5612508ba0) 1116568
> checking '*' .................................. PASS (d9da0200176ead52) 4466272
> checking 'median' ............................. PASS (06af3e4c86ccda6d) 0.3823529
> checking 'quantile' ........................... PASS (11ef7960975f6975) 8.139216
> checking 'Image' .............................. PASS (e6ae9fe3a69fec2c) 2233136
> checking 'as.Image' ........................... PASS (2a321f78219fa026) 2233136
> checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
> checking 'imageData' .......................... PASS (6a221a6a2cec815a) 2233136
> checking 'imageData<-' ........................ PASS (9b67f57c77f74d34) 2233136
> checking 'as.raster' .......................... PASS (73a5fd711e0edd14) -0.1
> checking 'colorMode<-' ........................ PASS (9b67f57c77f74d34) 2233136
> checking 'numberOfFrames' ..................... PASS (d9914b6bdfe88a1d) 5.9
> checking 'getFrames' .......................... PASS (e9438bf3afe19fef) 1229859
> checking 'display' ............................ PASS (d28e3e75eed04056) 256.3
> checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
> checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
> checking 'drawCircle' ......................... PASS (88969323fe4011cb) 2502013
> checking '[' .................................. PASS (856f5f5a7828a96f) 41200.75
> checking 'resize' ............................. PASS (22d4ff5205c02f14) 72772706
> checking 'rotate' ............................. PASS (3e6dee126668bb5a) 3978266
> checking 'flip' ............................... PASS (753308a7b510662f) 2296325
> checking 'flop' ............................... PASS (1ea0c6126c86d976) 2231772
> checking 'translate' .......................... PASS (c3111aabac6df5c8) 3827517
> checking 'affine' ............................. PASS (559df6f741145f7f) 219714.6
> checking 'transpose' .......................... PASS (d9282e9071f27e10) 2284582
> checking 'thresh' ............................. PASS (b51eea6755dfd65a) 1426674
> checking 'channel' ............................ PASS (9b67f57c77f74d34) 2233136
> checking 'otsu' ............................... PASS (2cdec937ebdb0543) 9.425391
> checking 'bwlabel' ............................ PASS (edce7604823b90a7) 2016822
> checking 'colorLabels' ........................ PASS (05cf97699b52f053) 15969784
> checking 'stackObjects' ....................... PASS (bbe84601c71da500) 2575847
> checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
> checking 'paintObjects' ....................... PASS (944b58c80d127777) 2379341
> checking 'rmObjects' .......................... PASS (1ed59ae8eb61aef6) 1934575
> checking 'reenumerate' ........................ PASS (1ed59ae8eb61aef6) 1934575
> checking 'reenumerate' ........................ PASS (edce7604823b90a7) 2016822
> checking 'computeFeatures' .................... PASS (53798e843cdbfa9f) 734993.9
> checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 19422.3
> checking 'ocontour' ........................... PASS (3a230e30e8d15bee) 118072.8
> checking 'localCurvature' ..................... PASS (a1d19191deda947d) 117246.2
> checking 'normalize' .......................... PASS (9ace81a69fc88c37) 2526618
> checking 'normalize' .......................... PASS (2a78b599de5c2ae9) 2163958
> checking 'gblur' .............................. PASS (0d226d91f7036796) 2237219
> checking 'filter2' ............................ PASS (7cb701d185d8631b) 56904871
> checking 'medianFilter' ....................... PASS (37328d9ce26ed388) 2231438
> checking 'equalize' ........................... PASS (05fc2423af12b77a) 2447139
> checking 'erode' .............................. PASS (17fcd8b3a8de8535) 1121204
> checking 'dilate' ............................. PASS (715c930769bb9119) 2104588
> checking 'opening' ............................ PASS (1ef38f55606cdbf4) 1451050
> checking 'closing' ............................ PASS (66cb111962e57366) 1569448
> checking 'whiteTopHat' ........................ PASS (66e080c20ad98021) 12004.54
> checking 'blackTopHat' ........................ PASS (c8b5fb6a0e1d3959) 20296.87
> checking 'selfComplementaryTopHat' ............ PASS (d91b85d0f726e766) 4469404
> checking 'distmap' ............................ PASS (4ced93e5efc06917) 7464344
> checking 'watershed' .......................... PASS (9c1a4d5672652853) 1541186
> checking 'floodFill' .......................... PASS (d9a38a5952fe360e) 2234521
> checking 'fillHull' ........................... PASS (8213f4f8b30b3c46) 1541186
> checking 'propagate' .......................... PASS (0731a1de5ddabcc4) 8948876
> checking 'toRGB' .............................. PASS (c62b6c6a269ea1eb) 20279146
> checking 'rgbImage' ........................... PASS (27eec26383a0bc15) 10796552
> checking 'colormap' ........................... PASS (eef6d0395d7fe0e7) 22585273
> checking 'combine' ............................ PASS (5b4994ce3c695b2e) 8992851
> checking 'combine' ............................ PASS (03e050af1c7e1af2) 56431472
> checking 'tile' ............................... PASS (db685d6eb3480813) 72664167
> checking 'untile' ............................. PASS (0e362c45443a3ec0) 60048605
> checking 'abind' .............................. PASS (add8d4baab35a5f9) 9273358
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'D:/biocbuild/bbs-3.15-bioc/meat/EBImage.Rcheck/00check.log'
for details.
EBImage.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL EBImage
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'EBImage' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c EBImage.c -o EBImage.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c clahe.c -o clahe.o
clahe.c: In function 'CLAHE':
clahe.c:223:19: warning: suggest parentheses around '+' inside '>>' [-Wparentheses]
uiSubY = uiYSize+1 >> 1; uiYU = uiNrY-1; uiYB = uiYU;
~~~~~~~^~
clahe.c:235:23: warning: suggest parentheses around '+' inside '>>' [-Wparentheses]
uiSubX = uiXSize+1 >> 1; uiXL = uiNrX - 1; uiXR = uiXL;
~~~~~~~^~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c distmap.cpp -o distmap.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c drawCircle.c -o drawCircle.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c floodFill.cpp -o floodFill.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c getFrames.c -o getFrames.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c haralick.c -o haralick.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c medianFilter.c -o medianFilter.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c morphology.cpp -o morphology.o
morphology.cpp: In instantiation of 'void compute_lookup_table_for_line_erode(type***, type*, int, int, chordSet*, PointXY) [with type = int]':
morphology.cpp:253:39: required from 'void erode_dilate(type*, type*, PointXY, int, int, chordSet*, type***) [with type = int]'
morphology.cpp:340:27: required from 'void _morphology(type*, type*, PointXY, int, SEXP, int) [with type = int; SEXP = SEXPREC*]'
morphology.cpp:374:79: required from here
morphology.cpp:196:15: warning: statement has no effect [-Wunused-value]
for (i; i < 0; ++i) {
^
morphology.cpp:199:15: warning: statement has no effect [-Wunused-value]
for (i; i < maxX; ++i) {
^
morphology.cpp:203:15: warning: statement has no effect [-Wunused-value]
for (i; i < size.x + set->maxXoffset; ++i) {
^
morphology.cpp: In instantiation of 'void compute_lookup_table_for_line_dilate(type***, type*, int, int, chordSet*, PointXY) [with type = int]':
morphology.cpp:257:39: required from 'void erode_dilate(type*, type*, PointXY, int, int, chordSet*, type***) [with type = int]'
morphology.cpp:340:27: required from 'void _morphology(type*, type*, PointXY, int, SEXP, int) [with type = int; SEXP = SEXPREC*]'
morphology.cpp:374:79: required from here
morphology.cpp:163:15: warning: statement has no effect [-Wunused-value]
for (i; i < 0; ++i) {
^
morphology.cpp:166:15: warning: statement has no effect [-Wunused-value]
for (i; i < maxX; ++i) {
^
morphology.cpp:170:15: warning: statement has no effect [-Wunused-value]
for (i; i < size.x + set->maxXoffset; ++i) {
^
morphology.cpp: In instantiation of 'void compute_lookup_table_for_line_erode(type***, type*, int, int, chordSet*, PointXY) [with type = double]':
morphology.cpp:253:39: required from 'void erode_dilate(type*, type*, PointXY, int, int, chordSet*, type***) [with type = double]'
morphology.cpp:340:27: required from 'void _morphology(type*, type*, PointXY, int, SEXP, int) [with type = double; SEXP = SEXPREC*]'
morphology.cpp:377:76: required from here
morphology.cpp:196:15: warning: statement has no effect [-Wunused-value]
for (i; i < 0; ++i) {
^
morphology.cpp:199:15: warning: statement has no effect [-Wunused-value]
for (i; i < maxX; ++i) {
^
morphology.cpp:203:15: warning: statement has no effect [-Wunused-value]
for (i; i < size.x + set->maxXoffset; ++i) {
^
morphology.cpp: In instantiation of 'void compute_lookup_table_for_line_dilate(type***, type*, int, int, chordSet*, PointXY) [with type = double]':
morphology.cpp:257:39: required from 'void erode_dilate(type*, type*, PointXY, int, int, chordSet*, type***) [with type = double]'
morphology.cpp:340:27: required from 'void _morphology(type*, type*, PointXY, int, SEXP, int) [with type = double; SEXP = SEXPREC*]'
morphology.cpp:377:76: required from here
morphology.cpp:163:15: warning: statement has no effect [-Wunused-value]
for (i; i < 0; ++i) {
^
morphology.cpp:166:15: warning: statement has no effect [-Wunused-value]
for (i; i < maxX; ++i) {
^
morphology.cpp:170:15: warning: statement has no effect [-Wunused-value]
for (i; i < size.x + set->maxXoffset; ++i) {
^
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c nativeRaster.c -o nativeRaster.o
nativeRaster.c: In function 'nativeRaster':
nativeRaster.c:38:7: warning: pointer targets in assignment from 'int *' to 'uint32_t *' {aka 'unsigned int *'} differ in signedness [-Wpointer-sign]
out = INTEGER(res);
^
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c normalize.c -o normalize.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c objects.c -o objects.o
objects.c: In function 'paintObjects':
objects.c:21:30: warning: unused variable 'dp' [-Wunused-variable]
double *obj, *src, *tgt, dp, val;
^~
objects.c: In function 'stackObjects':
objects.c:295:10: warning: 'res' may be used uninitialized in this function [-Wmaybe-uninitialized]
return res;
^~~
In file included from objects.h:5,
from objects.c:1:
D:/biocbuild/bbs-3.15-bioc/R/include/Rdefines.h:143:28: warning: 'dim' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define SET_DIM(x, n) Rf_setAttrib(x, R_DimSymbol, n)
^~~~~~~~~~~~
objects.c:192:13: note: 'dim' was declared here
SEXP res, dim, xys, img;
^~~
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c ocontour.c -o ocontour.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c propagate.cpp -o propagate.o
propagate.cpp: In function 'SEXPREC* propagate(SEXP, SEXP, SEXP, SEXP)':
propagate.cpp:174:31: warning: 'mask' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (! mask_in[IJ(p.i, p.j)]) continue;
^
propagate.cpp:197:8: note: 'mask' was declared here
int *mask;
^~~~
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c spatial.c -o spatial.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c thresh.cpp -o thresh.o
thresh.cpp: In instantiation of 'void _thresh(T*, int*, int, int, int, int, double) [with T = int]':
thresh.cpp:50:76: required from here
thresh.cpp:64:42: warning: unused variable 'i' [-Wunused-variable]
int xi, yi, u, k, l, ou, nu, ov, nv, i;
^
thresh.cpp: In instantiation of 'void _thresh(T*, int*, int, int, int, int, double) [with T = double]':
thresh.cpp:53:76: required from here
thresh.cpp:64:42: warning: unused variable 'i' [-Wunused-variable]
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c tile.cpp -o tile.o
tile.cpp: In function 'SEXPREC* tile(SEXP, SEXP, SEXP)':
tile.cpp:24:17: warning: unused variable 'ims' [-Wunused-variable]
SEXP res, dm, ims;
^~~
tile.cpp: In function 'SEXPREC* untile(SEXP, SEXP, SEXP)':
tile.cpp:161:29: warning: unused variable 'y' [-Wunused-variable]
int nprotect=0, i, j, im, y, iim;
^
tile.cpp:162:18: warning: unused variable 'dat' [-Wunused-variable]
SEXP res, dim, dat;
^~~
tile.cpp:163:11: warning: unused variable 'src' [-Wunused-variable]
double *src, *tgt;
^~~
tile.cpp:163:17: warning: unused variable 'tgt' [-Wunused-variable]
double *src, *tgt;
^~~
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c tools.c -o tools.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c transpose.cpp -o transpose.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c watershed.cpp -o watershed.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o EBImage.dll tmp.def EBImage.o clahe.o distmap.o drawCircle.o floodFill.o getFrames.o haralick.o medianFilter.o morphology.o nativeRaster.o normalize.o objects.o ocontour.o propagate.o spatial.o thresh.o tile.o tools.o transpose.o watershed.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-EBImage/00new/EBImage/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'abind' in package 'EBImage'
** help
*** installing help indices
converting help for package 'EBImage'
finding HTML links ... done
EBImage-defunct html
EBImage html
Image html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-EBImage/00new/EBImage/help/colormode.html
abind html
bwlabel html
channel html
clahe html
colorLabels html
colormap html
combine html
computeFeatures html
display-shiny html
display html
finding level-2 HTML links ... done
distmap html
drawCircle html
equalize html
fillHull html
filter2 html
floodFill html
gblur html
io html
localCurvature html
medianFilter html
morphology html
normalize html
ocontour html
otsu html
paintObjects html
propagate html
rmObjects html
spatial html
stackObjects html
thresh html
tile html
transpose html
watershed html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (EBImage)
Making 'packages.html' ... done
EBImage.Rcheck/tests/test.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> ## cat tests/test.R | R --vanilla &>tests/test.Rout.save
> library("EBImage")
>
> set.seed(0) # make random color permutations in 'colorLabels' reproducible
> .digits = floor(-log10(.Machine$double.eps^.5) - 1)
>
> ## returns a hashcode given an object
> hash = function (x) .Call(digest:::digest_impl, serialize(x, connection=NULL, ascii=FALSE, xdr=FALSE), 7L, -1L, 14L, 0L, 0L, PACKAGE="digest")
>
> hash.old <- function(x) {
+ if (is.list(x) && length(x)>0) {
+ hash.old(sapply(x, hash.old, USE.NAMES=FALSE))
+ }
+ else {
+ xd <- suppressWarnings(as.numeric(x))
+ xd <- xd[!(is.nan(xd)|is.na(xd))]
+ sx <- sum(xd*(1:length(xd)))
+ if (is.matrix(xd))
+ sx + 0.7 * hash.old(dim(xd))
+ else
+ sx - 0.1
+ }
+ }
>
> ## try to evaluate fun(x,...)
> check <- function(fun, x, ..., capture.output=FALSE, suppressWarnings=FALSE, suppressMessages=FALSE, expectError=FALSE, round=FALSE, debug=FALSE) {
+ passed <- TRUE
+
+ cat(sprintf("checking \'%s\' %s ", fun, paste(rep(".", 35L-nchar(fun)), collapse = "")))
+
+ expr = quote(do.call(fun,c(list(x),list(...))))
+ if ( isTRUE(capture.output) ) expr = call("capture.output", expr)
+ if ( isTRUE(suppressWarnings) ) expr = call("suppressWarnings", expr)
+ if ( isTRUE(suppressMessages) ) expr = call("suppressMessages", expr)
+
+ y <- try(eval(expr), silent=TRUE)
+
+ if ( (inherits(y, "try-error") && !isTRUE(expectError)) || (is.Image(y) && !validObject(y)) ) {
+ y <- NULL
+ passed <- FALSE
+ }
+
+ if (passed) {
+ if (isTRUE(round) && !inherits(y, "try-error"))
+ y = if ( is.list(y) ) lapply(y, round, digits=.digits) else round(y, digits = .digits)
+ cat("PASS (", hash(y), ") ", hash.old(y), "\n", sep="")
+ }
+ else cat("FAIL\n")
+
+ if ( isTRUE(debug) ) {
+ if (is.Image(y)) show(y)
+ if (is.array(y)) display(y, all=TRUE, interpolate=FALSE)
+ else if (is.character(y)) cat(y, sep="\n")
+ }
+
+ y
+ }
>
> checkIO <- function(name) {
+ cat("checking IO for \'", name, "\' ... ", sep="")
+ x = get(name)
+ y = FALSE
+ if ( !is.null(x) ) {
+ y <- try({
+ xx <- readImage(writeImage(x, tempfile("", fileext = ".tif")))
+ dimnames(xx) <- dimnames(x)
+ identical(x, xx)
+ }, silent=TRUE)
+ }
+ if ( isTRUE(y) ) cat("PASS\n") else cat("FAIL\n")
+ invisible(y)
+ }
>
> testIOFunctions <- function(...) invisible(lapply(list(...), function(y) checkIO(y)))
>
> testEBImageFunctions <- function(x) {
+ cat("new test (hash=", hash(x), ")\n", sep="")
+
+ z <- check("show", x, capture.output=TRUE)
+ z <- check("print", x, short=TRUE, capture.output=TRUE)
+ if ( typeof(x)=="logical" )
+ z <- check("hist", EBImage:::castImage(x), breaks = c(0, .5, 1))
+ else
+ z <- check("hist", x)
+
+ ## pixel arithmetic
+ z <- check(">", x, 0.5)
+ z <- check("+", x, x)
+ z <- check("/", x, 2)
+ z <- check("*", 2L, x)
+ z <- check("median", x)
+ z <- check("quantile", x)
+
+ ## image methods
+ z <- check("Image", x, colormode="Color")
+ z <- check("as.Image", x)
+ z <- check("is.Image", x)
+ z <- check("imageData", x)
+ z <- check("imageData<-", x, z)
+ z <- check("as.raster", x)
+ z <- check("colorMode<-", x, Grayscale, suppressWarnings=TRUE)
+ y <- check("numberOfFrames", x, type="render")
+ z <- if ( y==1L ) check("getFrames", x, 1L, "render") else check("getFrames", x)
+ z <- check("display", x, method = "browser", tempDir = file.path(dirname(tempdir()), "EBImage_tmp"))
+ if ( y>2L ) {
+ z <- check("display", x, method = "raster", all = TRUE)
+ z <- check("image", x, i = 3L)
+ }
+ else {
+ z <- if (y==1L) check("display", x, method = "raster") else check("display", x, method = "raster", frame = 2L, suppressMessages=TRUE)
+ z <- check("image", x, suppressMessages=TRUE)
+ }
+
+ ## drawCircle
+ d <- dim(x)
+ c.x <- ceiling(d[1L]/2)
+ c.y <- ceiling(d[2L]/2)
+ radius <- max(c.x-1, 1)
+ nf <- numberOfFrames(x, "render")
+ fill <- nf > 1
+ col <- if ( colorMode(x)==Color ) "yellow" else 1
+ z <- check("drawCircle", x, c.x, c.x, radius, col, fill, nf)
+
+ ## subset
+ sub <- list(x, 1:min(10,d[1L]), 1:min(7,d[2L]))
+ if (length(d)>2) sub <- c(sub, rep(TRUE, length(d)-2))
+ z <- do.call("check", c("[", sub))
+
+ ## spatial transform
+ z <- check("resize", x, 137, 22)
+ z <- check("rotate", x, 20)
+ z <- check("flip", x)
+ z <- check("flop", x)
+ z <- check("translate", x, c(-7, 5), bg.col=1)
+ z <- check("affine", x, matrix(c(-7, 5, 0.1, -0.2, 0.3, 1), ncol=2L))
+ z <- check("transpose", x)
+
+ ## segmentation
+ fd = pmin(5, (d[1:2]-1)/2)
+ z <- check("thresh", x, w=fd[1L], h=fd[2L])
+ y <- check("channel", x, "luminance")
+ z <- check("otsu", y)
+ y <- suppressWarnings(normalize(y, separate=FALSE))
+ y <- check("bwlabel", y > 0.5)
+ z <- check("colorLabels", y, suppressWarnings=TRUE)
+ z <- check("stackObjects", y, x)
+ z <- check("stackObjects", Image(dim=dim(y)), x)
+ cls <- if ( colorMode(x)==Color ) TRUE else FALSE
+ z <- check("paintObjects", y, x, col=c("#ff00ff", "#ffff00"), opac=c(1.0, 0.5), thick=cls, closed=cls)
+ z <- check("rmObjects", y, as.list(seq_len(numberOfFrames(y))), cls)
+ z <- check("reenumerate", z)
+ z <- check("reenumerate", y)
+
+ ## features
+ x1 <- getFrame(x, 1)
+ x2 <- list(x=x1, y=2*x1)
+ y1 <- getFrame(y, 1)
+ expandRef <- if ( min(dim(x1)) > 31L ) function(ref, refnames) standardExpandRef(ref, refnames, gblob(n=31L)) else NULL
+ z <- check("computeFeatures", y1, x2, expandRef = expandRef, round = !is.null(expandRef))
+ z <- check("computeFeatures", y1, x2, expandRef = expandRef, properties = TRUE)
+
+ ## curvature
+ y <- check("ocontour", x>0.5)
+ if (length(y) > 0L ) z <- check("localCurvature", y[[1L]], round=TRUE)
+
+ ## filtering
+ z <- check("normalize", x, suppressWarnings=TRUE)
+ z <- check("normalize", x, inputRange=c(0.1, 0.9), suppressWarnings=TRUE)
+ z <- check("gblur", x, sigma=1, expectError=min(d)<7, round=TRUE)
+ y <- if (cls) "replicate" else if (nf>1) 0.5 else "circular"
+ z <- check("filter2", x, array(1, dim=c(5, 5)), y, round=TRUE)
+ z <- check("medianFilter", x, 2)
+ z <- check("equalize", x, suppressWarnings=TRUE)
+
+ ## morphological operations
+ y <- x > 0.5
+ z <- check("erode", y)
+ z <- check("dilate", y, makeBrush(5, 'disc'))
+ z <- check("opening", y, makeBrush(7, 'line'))
+ z <- check("closing", y, makeBrush(4, 'line', angle=0), suppressWarnings=TRUE)
+ z <- check("whiteTopHat", x, makeBrush(3, 'box'))
+ z <- check("blackTopHat", x, makeBrush(5, 'disc'))
+ z <- check("selfComplementaryTopHat", x)
+ z <- check("distmap", y)
+ z <- check("watershed", z)
+ z <- check('floodFill', x, c(5, 5), 0.5)
+ z <- check('fillHull', y)
+
+ ## propagate
+ y <- thresh(x, w=fd[1L], h=fd[2L], offset=0.02)
+ y <- fillHull(y)
+ y <- bwlabel(y)
+ z <- check("propagate", x, y, x>0.5)
+
+ ## colorspace
+ z <- check("toRGB", x)
+ z <- check("rgbImage", x, x>0.5)
+ z <- check("colormap", channel(x, "luminance"), heat.colors(16L))
+
+ ## image stacking, combining, tiling
+ y <- check("combine", list(NULL, x, x, NULL, NULL))
+ z <- check("combine", x, y, y)
+ y <- check("tile", z, nx=3)
+ z <- check("untile", y, c(3, 2))
+ y <- check("abind", list(x, x), along=length(d)+1L)
+ cat("\n")
+ }
>
>
> ## check error handling
> try.readImage <- function(...) tryCatch(suppressWarnings(readImage(...)), error = function(e) NULL)
> mock <- try.readImage(system.file("images", package="EBImage"), type="png")
> mock <- try.readImage("http://www.huber.embl.de/EBImage/missing.file ", type="png")
>
> ## single greyscale and color images
> sample <- try.readImage(system.file("images","sample.png", package="EBImage"))
> sample.color <- try.readImage(system.file("images","sample-color.png", package="EBImage"))
> ## multi-frame image stack
> f = system.file("images","nuclei.tif", package="EBImage")
> nuclei = try.readImage(c(f, f))
> ## test reading from URL
> logo <- try.readImage("http://www.huber.embl.de/EBImage/logo.png")
>
> ## test: IO operations
> testIOFunctions("sample", "sample.color", "nuclei", "logo")
checking IO for 'sample' ... PASS
checking IO for 'sample.color' ... PASS
checking IO for 'nuclei' ... PASS
checking IO for 'logo' ... PASS
Warning message:
In readTIFF(x, all = all, ...) :
TIFFReadDirectory: Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.
>
> ## test: black image
> testEBImageFunctions(Image(0, c(8, 8)))
new test (hash=0dd403afc6b994a2)
checking 'show' ............................... PASS (28a07aa400220e9c) -0.1
checking 'print' .............................. PASS (7ff286491e0fb82d) -0.1
checking 'hist' ............................... PASS (a7005488227f4ae4) Inf
checking '>' .................................. PASS (d3559f388747a87f) -0.1
checking '+' .................................. PASS (0dd403afc6b994a2) -0.1
checking '/' .................................. PASS (0dd403afc6b994a2) -0.1
checking '*' .................................. PASS (0dd403afc6b994a2) -0.1
checking 'median' ............................. PASS (0c72e13f2da056a7) -0.1
checking 'quantile' ........................... PASS (d6d34cfe857308c8) -0.1
checking 'Image' .............................. PASS (a1d03d4118094283) -0.1
checking 'as.Image' ........................... PASS (0dd403afc6b994a2) -0.1
checking 'is.Image' ........................... PASS (c5cfdf6777477824) 0.9
checking 'imageData' .......................... PASS (f876a3f8e49b5beb) -0.1
checking 'imageData<-' ........................ PASS (0dd403afc6b994a2) -0.1
checking 'as.raster' .......................... PASS (33de24a1fac6bd97) -0.1
checking 'colorMode<-' ........................ PASS (0dd403afc6b994a2) -0.1
checking 'numberOfFrames' ..................... PASS (8e2352fb8e5e5114) 0.9
checking 'getFrames' .......................... PASS (6dc251bf107e7a89) -0.2
checking 'display' ............................ PASS (b6e562444aa235fd) 165.3
checking 'display' ............................ PASS (4a72ef17f0bfbfcd) -0.1
checking 'image' .............................. PASS (4a72ef17f0bfbfcd) -0.1
checking 'drawCircle' ......................... PASS (6f088cd968ff93bd) 447.9
checking '[' .................................. PASS (e9d628cb714f2ae4) -0.1
checking 'resize' ............................. PASS (4d1192f70ce09751) -0.1
checking 'rotate' ............................. PASS (4e59843d240ab1dd) -0.1
checking 'flip' ............................... PASS (0dd403afc6b994a2) -0.1
checking 'flop' ............................... PASS (0dd403afc6b994a2) -0.1
checking 'translate' .......................... PASS (568f8a693cf3d43d) 1932.9
checking 'affine' ............................. PASS (0dd403afc6b994a2) -0.1
checking 'transpose' .......................... PASS (0dd403afc6b994a2) -0.1
checking 'thresh' ............................. PASS (925a8ec641d9a080) -0.1
checking 'channel' ............................ PASS (0dd403afc6b994a2) -0.1
checking 'otsu' ............................... PASS (4f84ddb5ca598088) -0.09804688
checking 'bwlabel' ............................ PASS (925a8ec641d9a080) -0.1
checking 'colorLabels' ........................ PASS (60d924e59b167063) -0.1
checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
checking 'paintObjects' ....................... PASS (0dd403afc6b994a2) -0.1
checking 'rmObjects' .......................... PASS (925a8ec641d9a080) -0.1
checking 'reenumerate' ........................ PASS (925a8ec641d9a080) -0.1
checking 'reenumerate' ........................ PASS (925a8ec641d9a080) -0.1
checking 'computeFeatures' .................... PASS (4a72ef17f0bfbfcd) -0.1
checking 'computeFeatures' .................... PASS (50090732ff9f9962) 19422.3
checking 'ocontour' ........................... PASS (66766fdfc8e61cb4) -0.1
checking 'normalize' .......................... PASS (0dd403afc6b994a2) -0.1
checking 'normalize' .......................... PASS (0dd403afc6b994a2) -0.1
checking 'gblur' .............................. PASS (0dd403afc6b994a2) -0.1
checking 'filter2' ............................ PASS (0dd403afc6b994a2) -0.1
checking 'medianFilter' ....................... PASS (0dd403afc6b994a2) -0.1
checking 'equalize' ........................... PASS (0dd403afc6b994a2) -0.1
checking 'erode' .............................. PASS (d3559f388747a87f) -0.1
checking 'dilate' ............................. PASS (d3559f388747a87f) -0.1
checking 'opening' ............................ PASS (d3559f388747a87f) -0.1
checking 'closing' ............................ PASS (d3559f388747a87f) -0.1
checking 'whiteTopHat' ........................ PASS (0dd403afc6b994a2) -0.1
checking 'blackTopHat' ........................ PASS (0dd403afc6b994a2) -0.1
checking 'selfComplementaryTopHat' ............ PASS (0dd403afc6b994a2) -0.1
checking 'distmap' ............................ PASS (0dd403afc6b994a2) -0.1
checking 'watershed' .......................... PASS (925a8ec641d9a080) -0.1
checking 'floodFill' .......................... PASS (d6f1f3e11a9f5ca7) 1039.9
checking 'fillHull' ........................... PASS (d3559f388747a87f) -0.1
checking 'propagate' .......................... PASS (925a8ec641d9a080) -0.1
checking 'toRGB' .............................. PASS (60d924e59b167063) -0.1
checking 'rgbImage' ........................... PASS (60d924e59b167063) -0.1
checking 'colormap' ........................... PASS (6fd20c5c7fe272b8) 2079.9
checking 'combine' ............................ PASS (30f1d97e53a17117) -0.1
checking 'combine' ............................ PASS (1bf00fb21a5b79fd) -0.1
checking 'tile' ............................... PASS (c0936f2bb862eeb6) 42140.88
checking 'untile' ............................. PASS (35e673bec7ac0968) 16809.31
checking 'abind' .............................. PASS (30f1d97e53a17117) -0.1
>
> ## test: white image
> testEBImageFunctions(Image(1L, c(5, 5)))
new test (hash=84811adc9ccb6a43)
checking 'show' ............................... PASS (efe22f560cf2ee5c) -0.1
checking 'print' .............................. PASS (74faac36aea39eec) -0.1
checking 'hist' ............................... PASS (0c56f536c0973a7c) Inf
checking '>' .................................. PASS (bfe40ba0889a2d11) 324.9
checking '+' .................................. PASS (6b457795bc65c18b) 649.9
checking '/' .................................. PASS (05c5b11fa9b2068d) 162.4
checking '*' .................................. PASS (6b457795bc65c18b) 649.9
checking 'median' ............................. PASS (8e2352fb8e5e5114) 0.9
checking 'quantile' ........................... PASS (c429873628f1b765) 14.9
checking 'Image' .............................. PASS (a7134010d9775a89) 324.9
checking 'as.Image' ........................... PASS (84811adc9ccb6a43) 324.9
checking 'is.Image' ........................... PASS (c5cfdf6777477824) 0.9
checking 'imageData' .......................... PASS (86add6eb3d9c9aea) 324.9
checking 'imageData<-' ........................ PASS (84811adc9ccb6a43) 324.9
checking 'as.raster' .......................... PASS (08f26b538ed6f151) -0.1
checking 'colorMode<-' ........................ PASS (84811adc9ccb6a43) 324.9
checking 'numberOfFrames' ..................... PASS (8e2352fb8e5e5114) 0.9
checking 'getFrames' .......................... PASS (52fa1d1a01e8b1a6) 324.8
checking 'display' ............................ PASS (0df7f39e89a77641) 150.3
checking 'display' ............................ PASS (4a72ef17f0bfbfcd) -0.1
checking 'image' .............................. PASS (4a72ef17f0bfbfcd) -0.1
checking 'drawCircle' ......................... PASS (2cd64c1bdc442f99) 324.9
checking '[' .................................. PASS (84811adc9ccb6a43) 324.9
checking 'resize' ............................. PASS (e856a1c0400af5bd) 4543605
checking 'rotate' ............................. PASS (76128c4334b78309) 483.6843
checking 'flip' ............................... PASS (84811adc9ccb6a43) 324.9
checking 'flop' ............................... PASS (84811adc9ccb6a43) 324.9
checking 'translate' .......................... PASS (2cd64c1bdc442f99) 324.9
checking 'affine' ............................. PASS (190906c8867b1585) 39.9
checking 'transpose' .......................... PASS (84811adc9ccb6a43) 324.9
checking 'thresh' ............................. PASS (81904b15ab632676) -0.1
checking 'channel' ............................ PASS (84811adc9ccb6a43) 324.9
checking 'otsu' ............................... PASS (341a03667d4038cf) 0.8980469
checking 'bwlabel' ............................ PASS (84811adc9ccb6a43) 324.9
checking 'colorLabels' ........................ PASS (9db9e8962f437e2a) 2849.9
checking 'stackObjects' ....................... PASS (6761caa75c9faef8) 324.9
checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
checking 'paintObjects' ....................... PASS (baaf7570b7456799) 270.7333
checking 'rmObjects' .......................... PASS (81904b15ab632676) -0.1
checking 'reenumerate' ........................ PASS (81904b15ab632676) -0.1
checking 'reenumerate' ........................ PASS (84811adc9ccb6a43) 324.9
checking 'computeFeatures' .................... PASS (b3ba135564a7c4b8) 950932.9
checking 'computeFeatures' .................... PASS (50090732ff9f9962) 19422.3
checking 'ocontour' ........................... PASS (a77df0f3bf26b51b) 1087.8
checking 'localCurvature' ..................... PASS (8cdca9a0513c3339) 1008.955
checking 'normalize' .......................... PASS (2cd64c1bdc442f99) 324.9
checking 'normalize' .......................... PASS (2cd64c1bdc442f99) 324.9
checking 'gblur' .............................. PASS (2c3d3965498eeab8) -0.1
checking 'filter2' ............................ PASS (04f5371e266b17cb) 8124.9
checking 'medianFilter' ....................... PASS (2cd64c1bdc442f99) 324.9
checking 'equalize' ........................... PASS (84811adc9ccb6a43) 324.9
checking 'erode' .............................. PASS (bfe40ba0889a2d11) 324.9
checking 'dilate' ............................. PASS (bfe40ba0889a2d11) 324.9
checking 'opening' ............................ PASS (bfe40ba0889a2d11) 324.9
checking 'closing' ............................ PASS (bfe40ba0889a2d11) 324.9
checking 'whiteTopHat' ........................ PASS (81904b15ab632676) -0.1
checking 'blackTopHat' ........................ PASS (81904b15ab632676) -0.1
checking 'selfComplementaryTopHat' ............ PASS (6b457795bc65c18b) 649.9
checking 'distmap' ............................ PASS (9bca8d045f7fd7aa) Inf
checking 'watershed' .......................... PASS (84811adc9ccb6a43) 324.9
checking 'floodFill' .......................... PASS (81904b15ab632676) -0.1
checking 'fillHull' ........................... PASS (bfe40ba0889a2d11) 324.9
checking 'propagate' .......................... PASS (81904b15ab632676) -0.1
checking 'toRGB' .............................. PASS (a307a95144c4309e) 2849.9
checking 'rgbImage' ........................... PASS (5ff2b4cc1405bf73) 1274.9
checking 'colormap' ........................... PASS (3908fa70acc3aefc) 2652.253
checking 'combine' ............................ PASS (4bf0d0b518924a84) 1274.9
checking 'combine' ............................ PASS (bb2eb72f1cd4837d) 7874.9
checking 'tile' ............................... PASS (408129daa1daae14) 24420.64
checking 'untile' ............................. PASS (6ca10c8ebd1dd737) 10445.49
checking 'abind' .............................. PASS (4bf0d0b518924a84) 1274.9
>
> ## test: 2D Grayscale 64x48
> x <- nuclei[50:113,208:255,2]
> testEBImageFunctions(as.array(x))
new test (hash=db735d61b6e1ed02)
checking 'show' ............................... PASS (2369a7c0462a6b5a) -0.1
checking 'print' .............................. PASS (2369a7c0462a6b5a) -0.1
checking 'hist' ............................... PASS (e72dc44a7d1a3974) 20513.55
checking '>' .................................. PASS (741aeb61bea6e5ea) 1217568
checking '+' .................................. PASS (29603c1a0d01fe20) 2940144
checking '/' .................................. PASS (304543247e80325e) 735035.9
checking '*' .................................. PASS (29603c1a0d01fe20) 2940144
checking 'median' ............................. PASS (0eba0d97082030ab) 0.04509804
checking 'quantile' ........................... PASS (34059ab9cd6355fe) 7.331373
checking 'Image' .............................. PASS (f9a95b22465a24d0) 1470072
checking 'as.Image' ........................... PASS (0ee060e48fd6af54) 1470072
checking 'is.Image' ........................... PASS (22434d0f508e0455) -0.1
checking 'imageData' .......................... PASS (db735d61b6e1ed02) 1470072
checking 'imageData<-' ........................ PASS (db735d61b6e1ed02) 1470072
checking 'as.raster' .......................... PASS (1121bcfe44305c0d) -0.1
checking 'colorMode<-' ........................ PASS (47a5f37493855c0e) -0.1
checking 'numberOfFrames' ..................... PASS (8e2352fb8e5e5114) 0.9
checking 'getFrames' .......................... PASS (fefcd63e624c1bee) 1470072
checking 'display' ............................ PASS (d12c25577fc0ae01) 397.3
checking 'display' ............................ PASS (4a72ef17f0bfbfcd) -0.1
checking 'image' .............................. PASS (4a72ef17f0bfbfcd) -0.1
checking 'drawCircle' ......................... PASS (44178ad73c7a6c57) 1607165
checking '[' .................................. PASS (362dc96ab12005d8) 48.94314
checking 'resize' ............................. PASS (88656458551aa663) 1419476
checking 'rotate' ............................. PASS (a77b95723957bd53) 2493977
checking 'flip' ............................... PASS (af4a5804ae6963f0) 1195977
checking 'flop' ............................... PASS (2390c64fbc01936c) 1462119
checking 'translate' .......................... PASS (ca8d506746cbe8a6) 2133961
checking 'affine' ............................. PASS (5d26bb5c15069253) 54171.17
checking 'transpose' .......................... PASS (28e006fbd8a3fb4f) 1522055
checking 'thresh' ............................. PASS (1000e9571087e50a) 1262811
checking 'channel' ............................ PASS (db735d61b6e1ed02) 1470072
checking 'otsu' ............................... PASS (beff39d5c5d30532) 0.3160156
checking 'bwlabel' ............................ PASS (4657b717111a5a09) 1199387
checking 'colorLabels' ........................ PASS (ea2e6bfde313bfe2) 10021713
checking 'stackObjects' ....................... PASS (1fee09fec27d58c3) 718602.9
checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
checking 'paintObjects' ....................... PASS (53d63c2995c63fe7) 1447733
checking 'rmObjects' .......................... PASS (93e55f84762d3e10) -0.1
checking 'reenumerate' ........................ PASS (93e55f84762d3e10) -0.1
checking 'reenumerate' ........................ PASS (4657b717111a5a09) 1199387
checking 'computeFeatures' .................... PASS (de6203a592fc892f) 3634215
checking 'computeFeatures' .................... PASS (dfdbe9cdff74e039) 145634.3
checking 'ocontour' ........................... PASS (c6fa8ca01032d0e0) 1050552
checking 'localCurvature' ..................... PASS (611e832ecb1e2d86) 1049392
checking 'normalize' .......................... PASS (384f4d5f164b8927) 1431381
checking 'normalize' .......................... PASS (00134ee633d7f224) 1266798
checking 'gblur' .............................. PASS (8a32f10682836e3a) 1466231
checking 'filter2' ............................ PASS (edc473eef918a772) 36592176
checking 'medianFilter' ....................... PASS (03e60235796a34f8) 1454712
checking 'equalize' ........................... PASS (ead728b91c59bdf3) 2642794
checking 'erode' .............................. PASS (722bb94152cd5404) 759774.9
checking 'dilate' ............................. PASS (2985310f2fc42356) 1797576
checking 'opening' ............................ PASS (14eeb88ccfc0334a) 1152484
checking 'closing' ............................ PASS (6b0640fcae8bbb0f) 1232737
checking 'whiteTopHat' ........................ PASS (b78629ad9870f67e) 18730.15
checking 'blackTopHat' ........................ PASS (167951a7a45661e2) 27716.23
checking 'selfComplementaryTopHat' ............ PASS (0c1d3178fb3af334) 2929436
checking 'distmap' ............................ PASS (66fe9e5107b4d571) 3826969
checking 'watershed' .......................... PASS (32f28339d17a2852) 2762113
checking 'floodFill' .......................... PASS (66c38fc4987749d4) 1470197
checking 'fillHull' ........................... PASS (741aeb61bea6e5ea) 1217568
checking 'propagate' .......................... PASS (357bd8bfcbd1047d) 3464201
checking 'toRGB' .............................. PASS (3868753482eff6e3) 12381911
checking 'rgbImage' ........................... PASS (210c9f2868c65cb5) 4859544
checking 'colormap' ........................... PASS (fbbe01fd08b104c7) 11126039
checking 'combine' ............................ PASS (5a7e6609d362b469) 5597376
checking 'combine' ............................ PASS (c23977e2dc8ace45) 33922678
checking 'tile' ............................... PASS (05f2b454c26a295c) 78718054
checking 'untile' ............................. PASS (263c2059331ac059) 72597772
checking 'abind' .............................. PASS (5a7e6609d362b469) 5597376
>
> ## test: 2D Color 32x48x1
> x <- sample[1:32, 1:48]
> testEBImageFunctions(Image(as.vector(x), dim(x), Color))
new test (hash=47850896f9c930e8)
checking 'show' ............................... PASS (79d9208863175ae7) -0.1
checking 'print' .............................. PASS (7ca80d9481e90728) -0.1
checking 'hist' ............................... PASS (7e48d5cfd64bdf7b) 130241.3
checking '>' .................................. PASS (fa6323783aa5b800) 988518.9
checking '+' .................................. PASS (fcef9d9c3b1b6d69) 1531522
checking '/' .................................. PASS (b6d4ddc3ea66b259) 382880.4
checking '*' .................................. PASS (fcef9d9c3b1b6d69) 1531522
checking 'median' ............................. PASS (acb249dde6db4b8b) 0.5039216
checking 'quantile' ........................... PASS (915bcda165290ff4) 10.10392
checking 'Image' .............................. PASS (47850896f9c930e8) 765760.9
checking 'as.Image' ........................... PASS (47850896f9c930e8) 765760.9
checking 'is.Image' ........................... PASS (c5cfdf6777477824) 0.9
checking 'imageData' .......................... PASS (61513af72b88a4e4) 765760.9
checking 'imageData<-' ........................ PASS (47850896f9c930e8) 765760.9
checking 'as.raster' .......................... PASS (2b41d92af54b416a) -0.1
checking 'colorMode<-' ........................ PASS (822df48d75796cae) 765760.9
checking 'numberOfFrames' ..................... PASS (8e2352fb8e5e5114) 0.9
checking 'getFrames' .......................... PASS (b93d23a4010b16df) 765760.8
checking 'display' ............................ PASS (de11b0b2e7a37592) 333.3
checking 'display' ............................ PASS (4a72ef17f0bfbfcd) -0.1
checking 'image' .............................. PASS (4a72ef17f0bfbfcd) -0.1
checking 'drawCircle' ......................... PASS (c65308597bd87bff) 782100.7
checking '[' .................................. PASS (1f7ad11e553307b5) 1285.273
checking 'resize' ............................. PASS (ff46a1ee14995b8f) 2941770
checking 'rotate' ............................. PASS (f2dc87f2efabfa50) 1247487
checking 'flip' ............................... PASS (800db51bb04c1dc9) 661525.2
checking 'flop' ............................... PASS (bcbec13e3661d698) 768451.1
checking 'translate' .......................... PASS (6f7dabbb36d0a8cb) 820434.5
checking 'affine' ............................. PASS (b42e8198f8b288b3) 22238.15
checking 'transpose' .......................... PASS (e7d25b58eeb821c5) 652051.4
checking 'thresh' ............................. PASS (d01647e3023d6a73) 382924.9
checking 'channel' ............................ PASS (fdfb0d7371845dcf) 162800.7
checking 'otsu' ............................... PASS (eeb23c3a41116cd3) 0.03085937
checking 'bwlabel' ............................ PASS (53954bb9151049f1) 832970.9
checking 'colorLabels' ........................ PASS (6e003a68522a54ab) 3692613
checking 'stackObjects' ....................... PASS (edd5b4b37aa43ebc) 596493.9
checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
checking 'paintObjects' ....................... PASS (15d4a0b8b77f24d9) 919069.9
checking 'rmObjects' .......................... PASS (532e00b80736b3f0) 565.9
checking 'reenumerate' ........................ PASS (532e00b80736b3f0) 565.9
checking 'reenumerate' ........................ PASS (53954bb9151049f1) 832970.9
checking 'computeFeatures' .................... PASS (74fe708668c9e3be) 3988895
checking 'computeFeatures' .................... PASS (dfdbe9cdff74e039) 145634.3
checking 'ocontour' ........................... PASS (63d189418364b4b8) 848253.8
checking 'localCurvature' ..................... PASS (e3b73aad089aeb80) 847428.3
checking 'normalize' .......................... PASS (a92e818f4e73c73a) 747801.4
checking 'normalize' .......................... PASS (abefb6f2a1f94308) 809649.2
checking 'gblur' .............................. PASS (997103fd0756733c) 761679.3
checking 'filter2' ............................ PASS (3e400931e10a7c4a) 19130329
checking 'medianFilter' ....................... PASS (98fcdf536fbd7323) 765141.6
checking 'equalize' ........................... PASS (ca31fb19c115f140) 705546.8
checking 'erode' .............................. PASS (87c34cd3ab434176) 908526.9
checking 'dilate' ............................. PASS (6c93fac1f8c9cb29) 1072658
checking 'opening' ............................ PASS (8655ad1e0550f18c) 985798.9
checking 'closing' ............................ PASS (ea050dc3c7d5a983) 988727.9
checking 'whiteTopHat' ........................ PASS (58d597df70d6d088) 3572.998
checking 'blackTopHat' ........................ PASS (6ce59e41f02d4c9b) 7139.473
checking 'selfComplementaryTopHat' ............ PASS (a8e77e0c7732da28) 1533178
checking 'distmap' ............................ PASS (3f87bb08626b6535) 12740449
checking 'watershed' .......................... PASS (1537ab2b5e366c26) 988518.9
checking 'floodFill' .......................... PASS (0c770ac4aee91f2a) 765755.4
checking 'fillHull' ........................... PASS (fa6323783aa5b800) 988518.9
checking 'propagate' .......................... PASS (4d49fbc865fcc9f9) 26630579
checking 'toRGB' .............................. PASS (47850896f9c930e8) 765760.9
checking 'rgbImage' ........................... PASS (f5645d04cd0fe8b6) 3520680
checking 'colormap' ........................... PASS (533aa45eacba8da0) 1816912
checking 'combine' ............................ PASS (84017bde4a115c3d) 2960568
checking 'combine' ............................ PASS (1957e3c7cf622693) 18119267
checking 'tile' ............................... PASS (455f47d2d54808cb) 33061491
checking 'untile' ............................. PASS (9a408e3ec431a525) 27788327
checking 'abind' .............................. PASS (cd1fe636c56e5d47) 2960568
>
> ## test: 3D Color 65x17x3
> x <- sample.color[1:65, 1:17,]
> testEBImageFunctions(x)
new test (hash=48f71cc8b0050cda)
checking 'show' ............................... PASS (224dd1d656f350f6) -0.1
checking 'print' .............................. PASS (a40af5685cc8269d) -0.1
checking 'hist' ............................... PASS (0eedff7586a90289) 348464.1
checking '>' .................................. PASS (37677cdd1723a762) 1058553
checking '+' .................................. PASS (bff43005d7cf5baa) 4072301
checking '/' .................................. PASS (075b1e2146d0c0c4) 1018075
checking '*' .................................. PASS (bff43005d7cf5baa) 4072301
checking 'median' ............................. PASS (87cf0535c43c036e) 0.2333333
checking 'quantile' ........................... PASS (9277f475391c119f) 7.280392
checking 'Image' .............................. PASS (48f71cc8b0050cda) 2036151
checking 'as.Image' ........................... PASS (48f71cc8b0050cda) 2036151
checking 'is.Image' ........................... PASS (c5cfdf6777477824) 0.9
checking 'imageData' .......................... PASS (092c3ebec1ba6cba) 2036151
checking 'imageData<-' ........................ PASS (48f71cc8b0050cda) 2036151
checking 'as.raster' .......................... PASS (0e1e0f27a820e816) -0.1
checking 'colorMode<-' ........................ PASS (f50e0963b48a2cc1) 2036151
checking 'numberOfFrames' ..................... PASS (8e2352fb8e5e5114) 0.9
checking 'getFrames' .......................... PASS (f21033753e0ff75f) 2036151
checking 'display' ............................ PASS (347538c33b9ad85e) 306.3
checking 'display' ............................ PASS (4a72ef17f0bfbfcd) -0.1
checking 'image' .............................. PASS (4a72ef17f0bfbfcd) -0.1
checking 'drawCircle' ......................... PASS (d55510e97af1fa3b) 2049936
checking '[' .................................. PASS (b7b39e1dc868848e) 9950.096
checking 'resize' ............................. PASS (5fa97b7a141ea096) 15155777
checking 'rotate' ............................. PASS (bb8c420c87c69bd9) 4525312
checking 'flip' ............................... PASS (fb21df964e612f05) 1977928
checking 'flop' ............................... PASS (6075b887765d62c1) 2048664
checking 'translate' .......................... PASS (f6fb6f5cca098a55) 2998417
checking 'affine' ............................. PASS (c1f501e539afb0d9) 226067.6
checking 'transpose' .......................... PASS (361d1659a2faa942) 1907377
checking 'thresh' ............................. PASS (2340dc5bc89035a0) 954376.9
checking 'channel' ............................ PASS (0b053d27b8ceadea) 257578.5
checking 'otsu' ............................... PASS (8328b85a064115c8) 0.3316406
checking 'bwlabel' ............................ PASS (2a53cf89b4a35c8a) 230329.9
checking 'colorLabels' ........................ PASS (076e153870ae4bd1) 1920855
checking 'stackObjects' ....................... PASS (2c3e1762984035ea) 712799.6
checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
checking 'paintObjects' ....................... PASS (8b7094dedac4a5ea) 2090128
checking 'rmObjects' .......................... PASS (e82eefc2fff258bf) -0.1
checking 'reenumerate' ........................ PASS (e82eefc2fff258bf) -0.1
checking 'reenumerate' ........................ PASS (2a53cf89b4a35c8a) 230329.9
checking 'computeFeatures' .................... PASS (1fe1266aa6159125) 746878.2
checking 'computeFeatures' .................... PASS (50090732ff9f9962) 19422.3
checking 'ocontour' ........................... PASS (647d51ebccc4030f) 117866.8
checking 'localCurvature' ..................... PASS (4113d1dace095a0b) 116636.2
checking 'normalize' .......................... PASS (ba670ee7628eadb4) 1788995
checking 'normalize' .......................... PASS (02201ae4e6232a01) 1858155
checking 'gblur' .............................. PASS (b5b0b076055fbf39) 2029979
checking 'filter2' ............................ PASS (7f0c3c9e1ed84c32) 50878763
checking 'medianFilter' ....................... PASS (e4487f529c0c8f64) 2034604
checking 'equalize' ........................... PASS (aafea856234df7cf) 2942981
checking 'erode' .............................. PASS (1668d070c32a3352) 830816.9
checking 'dilate' ............................. PASS (70f0b97d44055dc4) 1339263
checking 'opening' ............................ PASS (bf8703b54eaaf477) 1013295
checking 'closing' ............................ PASS (2a44925702fbcb45) 1069405
checking 'whiteTopHat' ........................ PASS (382c254a636d15be) 16585.63
checking 'blackTopHat' ........................ PASS (17f9061f04410117) 22039.05
checking 'selfComplementaryTopHat' ............ PASS (7345b102e7c10661) 4071763
checking 'distmap' ............................ PASS (917c16e57cfe8663) 6038778
checking 'watershed' .......................... PASS (7a21acc522ee0901) 1058553
checking 'floodFill' .......................... PASS (22d2bfdee3f4347e) 2036854
checking 'fillHull' ........................... PASS (37677cdd1723a762) 1058553
checking 'propagate' .......................... PASS (311992f3f5e46ef3) 7755487
checking 'toRGB' .............................. PASS (48f71cc8b0050cda) 2036151
checking 'rgbImage' ........................... PASS (ee121a9652710512) 7617867
checking 'colormap' ........................... PASS (7904c40deb5ac89a) 1657338
checking 'combine' ............................ PASS (0996d92466ee854e) 8350133
checking 'combine' ............................ PASS (7e54ded05ceace14) 52959073
checking 'tile' ............................... PASS (2584fda7b98afd99) 107188639
checking 'untile' ............................. PASS (a54c5217f194f8a7) 97994583
checking 'abind' .............................. PASS (0996d92466ee854e) 8350133
>
> ## test: 3D Grayscale logical 32x32x2
> x <- sample[32:63, 32:63]
> x <- x > otsu(x)
> x <- combine(x, x)
> testEBImageFunctions(x)
new test (hash=0dfc99a32eca6c75)
checking 'show' ............................... PASS (dafa895e16b40940) -0.1
checking 'print' .............................. PASS (1dd6ebc27d9cea77) -0.1
checking 'hist' ............................... PASS (4d550d4c758200f9) 5855.343
checking '>' .................................. PASS (0dfc99a32eca6c75) 1055560
checking '+' .................................. PASS (de2c65071acbd149) 2111120
checking '/' .................................. PASS (a4a10da152c2288c) 527779.9
checking '*' .................................. PASS (de2c65071acbd149) 2111120
checking 'median' ............................. PASS (0c72e13f2da056a7) -0.1
checking 'quantile' ........................... PASS (51de3cb0579b1fa7) 8.9
checking 'Image' .............................. PASS (2abf785fff59216a) 1055560
checking 'as.Image' ........................... PASS (0dfc99a32eca6c75) 1055560
checking 'is.Image' ........................... PASS (c5cfdf6777477824) 0.9
checking 'imageData' .......................... PASS (e3c8e0148f6a4719) 1055560
checking 'imageData<-' ........................ PASS (0dfc99a32eca6c75) 1055560
checking 'as.raster' .......................... PASS (14c8b304499a1db2) -0.1
checking 'colorMode<-' ........................ PASS (0dfc99a32eca6c75) 1055560
checking 'numberOfFrames' ..................... PASS (47c6414be054e0d0) 1.9
checking 'getFrames' .......................... PASS (7e972c640b9b852f) 916715.6
checking 'display' ............................ PASS (626250b1adff3cb2) 285.3
checking 'display' ............................ PASS (4a72ef17f0bfbfcd) -0.1
checking 'image' .............................. PASS (4a72ef17f0bfbfcd) -0.1
checking 'drawCircle' ......................... PASS (2c87a6f556ab6c8d) 1656514
checking '[' .................................. PASS (2ef6b46107ddc598) 1889.9
checking 'resize' ............................. PASS (5e22a297f1aaa672) 9108608
checking 'rotate' ............................. PASS (d368a6f158e4a42d) 1600126
checking 'flip' ............................... PASS (dded8d9c7c670d69) 714439.9
checking 'flop' ............................... PASS (d4611b6572d52268) 1064092
checking 'translate' .......................... PASS (4545c4961aced975) 1105982
checking 'affine' ............................. PASS (b9ba81b3f9f1117b) 133467.8
checking 'transpose' .......................... PASS (60241d37c5fff28e) 758083.9
checking 'thresh' ............................. PASS (5f90f811f0ede222) 824497.9
checking 'channel' ............................ PASS (0dfc99a32eca6c75) 1055560
checking 'otsu' ............................... PASS (6ab30063c9cb4fd4) 1.4
checking 'bwlabel' ............................ PASS (298b1cc69347d741) 1597368
checking 'colorLabels' ........................ PASS (e04a2ac8541504d7) 5485361
checking 'stackObjects' ....................... PASS (6b43eb7771b42140) 8889538
checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
checking 'paintObjects' ....................... PASS (8a38af2995ce8037) 834266.6
checking 'rmObjects' .......................... PASS (26480ded39aa6e19) 1303423
checking 'reenumerate' ........................ PASS (c80605c7f02da85a) 1244828
checking 'reenumerate' ........................ PASS (298b1cc69347d741) 1597368
checking 'computeFeatures' .................... PASS (68343f70d0d1737f) 416164140
checking 'computeFeatures' .................... PASS (dfdbe9cdff74e039) 145634.3
checking 'ocontour' ........................... PASS (4fb2389f9904a311) 836958.8
checking 'localCurvature' ..................... PASS (2b74e1f8fbe5a7bb) 835041.5
checking 'normalize' .......................... PASS (1ab59eb9157a66c6) 1055560
checking 'normalize' .......................... PASS (1ab59eb9157a66c6) 1055560
checking 'gblur' .............................. PASS (342ad29d21076375) 1037581
checking 'filter2' ............................ PASS (1eb04c71e150cf47) 26149148
checking 'medianFilter' ....................... PASS (e30e8be2936478c0) 1030730
checking 'equalize' ........................... PASS (1ab59eb9157a66c6) 1055560
checking 'erode' .............................. PASS (0f3e44fb76ab60a2) 617311.9
checking 'dilate' ............................. PASS (02cad0bca5d24adc) 1591594
checking 'opening' ............................ PASS (c2244cde8fad46a6) 861145.9
checking 'closing' ............................ PASS (783b09b51e1dac61) 1188258
checking 'whiteTopHat' ........................ PASS (15133662899d87a7) 148131.9
checking 'blackTopHat' ........................ PASS (38c6e9d2a3359f3a) 202411.9
checking 'selfComplementaryTopHat' ............ PASS (bd3b404b3e65d4a5) 2151192
checking 'distmap' ............................ PASS (2c1bf601469a0408) 3856630
checking 'watershed' .......................... PASS (99b0fcb0618a08a3) 1443978
checking 'floodFill' .......................... PASS (eb581bf959e8205e) 2057384
checking 'fillHull' ........................... PASS (162c9b15d71fc7cd) 1096352
checking 'propagate' .......................... PASS (cbe3a7ff31614dc9) 1613920
checking 'toRGB' .............................. PASS (81942d6f2bb0d146) 8499672
checking 'rgbImage' ........................... PASS (c0a9c0a15efba438) 4777616
checking 'colormap' ........................... PASS (3439b001d77ffd6e) 10283526
checking 'combine' ............................ PASS (1fa85a553b6dbf99) 3888784
checking 'combine' ............................ PASS (eafffae37810e5b9) 23054440
checking 'tile' ............................... PASS (ed09cbf55843986b) 48846817
checking 'untile' ............................. PASS (2eba92509b4a3f7d) 41221063
checking 'abind' .............................. PASS (dd89c1ca231033b0) 3888784
>
> ## test: 4D Color 33x16x3x2
> x <- sample.color[1:33, 1:16,]
> x <- combine(x, x)
> testEBImageFunctions(x)
new test (hash=43dbe82e1c3a72c7)
checking 'show' ............................... PASS (0ae4482e10a26740) -0.1
checking 'print' .............................. PASS (e0ed7a93a4106da4) -0.1
checking 'hist' ............................... PASS (a354f3d508f1a243) 492113.2
checking '>' .................................. PASS (14c85e9c6a190efd) 2013322
checking '+' .................................. PASS (20f87e97112cc44e) 4709417
checking '/' .................................. PASS (bd0a681d680da84f) 1177354
checking '*' .................................. PASS (20f87e97112cc44e) 4709417
checking 'median' ............................. PASS (d97d8924cf85a8a5) 0.3823529
checking 'quantile' ........................... PASS (f18a831d6b8056b5) 8.139216
checking 'Image' .............................. PASS (43dbe82e1c3a72c7) 2354709
checking 'as.Image' ........................... PASS (43dbe82e1c3a72c7) 2354709
checking 'is.Image' ........................... PASS (c5cfdf6777477824) 0.9
checking 'imageData' .......................... PASS (acefc274aafca2a3) 2354709
checking 'imageData<-' ........................ PASS (43dbe82e1c3a72c7) 2354709
checking 'as.raster' .......................... PASS (dedc569bb4c39389) -0.1
checking 'colorMode<-' ........................ PASS (78a054c14130e8cc) 2354709
checking 'numberOfFrames' ..................... PASS (47c6414be054e0d0) 1.9
checking 'getFrames' .......................... PASS (a5288dbe65f25cd6) 1440422
checking 'display' ............................ PASS (cfc06c54b45f8f0e) 239.3
checking 'display' ............................ PASS (4a72ef17f0bfbfcd) -0.1
checking 'image' .............................. PASS (4a72ef17f0bfbfcd) -0.1
checking 'drawCircle' ......................... PASS (ad1803d8fa4af078) 2650006
checking '[' .................................. PASS (89ddefa5b38fe4f0) 40701.82
checking 'resize' ............................. PASS (e98e16e095f09d8b) 76725662
checking 'rotate' ............................. PASS (c06b816a74a85930) 4140744
checking 'flip' ............................... PASS (810a3583c91cb31c) 2309692
checking 'flop' ............................... PASS (877a43e063101c32) 2358658
checking 'translate' .......................... PASS (08a04d76fd84f8a9) 3393923
checking 'affine' ............................. PASS (1d7cc91f3ca03a90) 301692.6
checking 'transpose' .......................... PASS (6b92009904695f08) 2303263
checking 'thresh' ............................. PASS (80fc6f84d1721b6c) 1549362
checking 'channel' ............................ PASS (29a2809472eaaaa2) 287206.2
checking 'otsu' ............................... PASS (c1466d3e9ed225ff) 1.370703
checking 'bwlabel' ............................ PASS (23f3e658e40843e6) 360413.9
checking 'colorLabels' ........................ PASS (2136b39e576c2fd8) 3039066
checking 'stackObjects' ....................... PASS (f3ad7ae0d2a6cc85) 2472601
checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
checking 'paintObjects' ....................... PASS (cc901b1d73d052c3) 2558300
checking 'rmObjects' .......................... PASS (f5c9853583c7bbd8) 261782.9
checking 'reenumerate' ........................ PASS (f5c9853583c7bbd8) 261782.9
checking 'reenumerate' ........................ PASS (23f3e658e40843e6) 360413.9
checking 'computeFeatures' .................... PASS (8fc45045f55bbaf2) 749353.1
checking 'computeFeatures' .................... PASS (50090732ff9f9962) 19422.3
checking 'ocontour' ........................... PASS (86cde5e313b695a0) 107408.8
checking 'localCurvature' ..................... PASS (61ebfebadd0bc3bc) 106275.7
checking 'normalize' .......................... PASS (ce655ec7ea73b99e) 2693244
checking 'normalize' .......................... PASS (5ddeb05eddf25516) 2315924
checking 'gblur' .............................. PASS (4c4c90b677964b7f) 2349701
checking 'filter2' ............................ PASS (dda2f4478bde8e69) 58841710
checking 'medianFilter' ....................... PASS (b92b17b3a8f23f6f) 2352447
checking 'equalize' ........................... PASS (721056a0c7381c37) 2616480
checking 'erode' .............................. PASS (046f720832faefd3) 1547948
checking 'dilate' ............................. PASS (2b4adac0ed5b574a) 2604996
checking 'opening' ............................ PASS (00b2b73e7d165898) 1919386
checking 'closing' ............................ PASS (5418d86566ce96d6) 2038196
checking 'whiteTopHat' ........................ PASS (cbde5539090bf855) 12437.36
checking 'blackTopHat' ........................ PASS (974cab12d6071583) 19780.97
checking 'selfComplementaryTopHat' ............ PASS (a90ee1eecd2ff9a2) 4711722
checking 'distmap' ............................ PASS (9f25a778bc97481a) 10836360
checking 'watershed' .......................... PASS (7a09d7342dc0f1a0) 2013322
checking 'floodFill' .......................... PASS (e702abd07a6fe6f5) 2355706
checking 'fillHull' ........................... PASS (14c85e9c6a190efd) 2013322
checking 'propagate' .......................... PASS (36f86ec18247ef6b) 11618104
checking 'toRGB' .............................. PASS (43dbe82e1c3a72c7) 2354709
checking 'rgbImage' ........................... PASS (3cc5363ae5d00743) 12071186
checking 'colormap' ........................... PASS (3db20420c586b1cb) 2273276
checking 'combine' ............................ PASS (f5feec2890bcd950) 9516503
checking 'combine' ............................ PASS (cb08edf6001e293c) 59844403
checking 'tile' ............................... PASS (2b989ec77441d03c) 114300809
checking 'untile' ............................. PASS (4d221c39718805d7) 105862114
checking 'abind' .............................. PASS (8bd8712a3397bb8d) 9516503
>
> ## test: 4D Grayscale 16x33x2x3
> colorMode(x) <- Grayscale
> imageData(x) <- aperm(x, c(2L, 1L, 4L, 3L))
> testEBImageFunctions(x)
new test (hash=799480d8d96438b2)
checking 'show' ............................... PASS (c5619352b713b97a) -0.1
checking 'print' .............................. PASS (730e516d39ebdcb9) -0.1
checking 'hist' ............................... PASS (0160ed3f9dd81390) 229030.4
checking '>' .................................. PASS (74c61a4c56fd955c) 1541186
checking '+' .................................. PASS (6a3eb99196a6e0c3) 4466272
checking '/' .................................. PASS (935de373d737698f) 1116568
checking '*' .................................. PASS (6a3eb99196a6e0c3) 4466272
checking 'median' ............................. PASS (d97d8924cf85a8a5) 0.3823529
checking 'quantile' ........................... PASS (f18a831d6b8056b5) 8.139216
checking 'Image' .............................. PASS (140ae9b9e0536480) 2233136
checking 'as.Image' ........................... PASS (799480d8d96438b2) 2233136
checking 'is.Image' ........................... PASS (c5cfdf6777477824) 0.9
checking 'imageData' .......................... PASS (f8da3e1ffbd4ce67) 2233136
checking 'imageData<-' ........................ PASS (799480d8d96438b2) 2233136
checking 'as.raster' .......................... PASS (c93aaa60d90967a4) -0.1
checking 'colorMode<-' ........................ PASS (799480d8d96438b2) 2233136
checking 'numberOfFrames' ..................... PASS (e57a146deb1262fb) 5.9
checking 'getFrames' .......................... PASS (3bd24aa4207f0c89) 1229859
checking 'display' ............................ PASS (7b4df230f1f50d6a) 256.3
checking 'display' ............................ PASS (4a72ef17f0bfbfcd) -0.1
checking 'image' .............................. PASS (4a72ef17f0bfbfcd) -0.1
checking 'drawCircle' ......................... PASS (7f07f83a57d91d18) 2502013
checking '[' .................................. PASS (db6a774290de96a7) 41200.75
checking 'resize' ............................. PASS (162900c4d68f18ef) 72772706
checking 'rotate' ............................. PASS (461a74661ede03a2) 3978266
checking 'flip' ............................... PASS (4e1f9b766e32d689) 2296325
checking 'flop' ............................... PASS (4c36897a8744d3dd) 2231772
checking 'translate' .......................... PASS (1bc68ba412b5ac8d) 3827517
checking 'affine' ............................. PASS (2ddfca6e7d25b608) 219714.6
checking 'transpose' .......................... PASS (e0b146d3092f86de) 2284582
checking 'thresh' ............................. PASS (a6eb16986d255449) 1426674
checking 'channel' ............................ PASS (799480d8d96438b2) 2233136
checking 'otsu' ............................... PASS (0ac1a37e8d92fca2) 9.425391
checking 'bwlabel' ............................ PASS (a7ce281fc9236d07) 2016822
checking 'colorLabels' ........................ PASS (ea86f9c1039117cf) 15071536
checking 'stackObjects' ....................... PASS (6c794ac71abbf400) 2575847
checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
checking 'paintObjects' ....................... PASS (a61b14e7c6a56f44) 2379341
checking 'rmObjects' .......................... PASS (1f1da17d9695481f) 1934575
checking 'reenumerate' ........................ PASS (1f1da17d9695481f) 1934575
checking 'reenumerate' ........................ PASS (a7ce281fc9236d07) 2016822
checking 'computeFeatures' .................... PASS (8056f4885b43ba71) 734993.9
checking 'computeFeatures' .................... PASS (50090732ff9f9962) 19422.3
checking 'ocontour' ........................... PASS (c3467ffca55b567e) 118072.8
checking 'localCurvature' ..................... PASS (c2e5b0512504cf2b) 117246.2
checking 'normalize' .......................... PASS (ffb2c6f2e9456c82) 2526618
checking 'normalize' .......................... PASS (76b48a6eb4e0efc2) 2163958
checking 'gblur' .............................. PASS (e8533fd2079f7658) 2237219
checking 'filter2' ............................ PASS (fcd2c0d8dd56967c) 56904871
checking 'medianFilter' ....................... PASS (8792be4c6105d68a) 2231438
checking 'equalize' ........................... PASS (36e6b2504cc19bb9) 2447139
checking 'erode' .............................. PASS (c3503d68ad771f8a) 1121204
checking 'dilate' ............................. PASS (bdbfcf0fb3209a4f) 2104588
checking 'opening' ............................ PASS (370781133c8a06a0) 1451050
checking 'closing' ............................ PASS (dbc6f3a18cc68c33) 1569448
checking 'whiteTopHat' ........................ PASS (6b7e05a31bbfd6f6) 12004.54
checking 'blackTopHat' ........................ PASS (41695f50d5c9a326) 20296.87
checking 'selfComplementaryTopHat' ............ PASS (97aed475b3ab8ab9) 4469404
checking 'distmap' ............................ PASS (186c9727f67ccd6b) 7464344
checking 'watershed' .......................... PASS (21cc1e7d9b206802) 1541186
checking 'floodFill' .......................... PASS (f780b1699f91037b) 2234521
checking 'fillHull' ........................... PASS (74c61a4c56fd955c) 1541186
checking 'propagate' .......................... PASS (45a6e2970cf3464e) 8948876
checking 'toRGB' .............................. PASS (a573eaa33ed3cb8a) 20279146
checking 'rgbImage' ........................... PASS (862f2be000f8c625) 10796552
checking 'colormap' ........................... PASS (f90fc23499233240) 22585273
checking 'combine' ............................ PASS (858e3b5e99c559c0) 8992851
checking 'combine' ............................ PASS (e34d63c4d231be5a) 56431472
checking 'tile' ............................... PASS (76fecef737d06abf) 72664167
checking 'untile' ............................. PASS (0c9f82c009e2a842) 60048605
checking 'abind' .............................. PASS (374ace8453841a89) 9273358
>
> ## test: Image subclass
> ImageSubclass <- setClass ("ImageSubclass", contains = "Image", slots = c(foo = "character"))
> x <- ImageSubclass(x, foo="bar")
> testEBImageFunctions(x)
new test (hash=7d417e13c93c2396)
checking 'show' ............................... PASS (37c1cb96896bf3e0) -0.1
checking 'print' .............................. PASS (de0939c4d4190bf4) -0.1
checking 'hist' ............................... PASS (0160ed3f9dd81390) 229030.4
checking '>' .................................. PASS (7fdd981ad6aaf9c7) 1541186
checking '+' .................................. PASS (1563be82d52357de) 4466272
checking '/' .................................. PASS (1b7b8823e0a52420) 1116568
checking '*' .................................. PASS (1563be82d52357de) 4466272
checking 'median' ............................. PASS (d97d8924cf85a8a5) 0.3823529
checking 'quantile' ........................... PASS (f18a831d6b8056b5) 8.139216
checking 'Image' .............................. PASS (140ae9b9e0536480) 2233136
checking 'as.Image' ........................... PASS (799480d8d96438b2) 2233136
checking 'is.Image' ........................... PASS (c5cfdf6777477824) 0.9
checking 'imageData' .......................... PASS (f8da3e1ffbd4ce67) 2233136
checking 'imageData<-' ........................ PASS (7d417e13c93c2396) 2233136
checking 'as.raster' .......................... PASS (c93aaa60d90967a4) -0.1
checking 'colorMode<-' ........................ PASS (7d417e13c93c2396) 2233136
checking 'numberOfFrames' ..................... PASS (e57a146deb1262fb) 5.9
checking 'getFrames' .......................... PASS (b16a0686a4bcc89d) 1229859
checking 'display' ............................ PASS (7b4df230f1f50d6a) 256.3
checking 'display' ............................ PASS (4a72ef17f0bfbfcd) -0.1
checking 'image' .............................. PASS (4a72ef17f0bfbfcd) -0.1
checking 'drawCircle' ......................... PASS (cc0ffdd3e20b8bc6) 2502013
checking '[' .................................. PASS (e8ed53e7ac44d57e) 41200.75
checking 'resize' ............................. PASS (6109906558547111) 72772706
checking 'rotate' ............................. PASS (cc7d8d9f74f632f3) 3978266
checking 'flip' ............................... PASS (a20a3ceae1cf4860) 2296325
checking 'flop' ............................... PASS (154a86c907bf3875) 2231772
checking 'translate' .......................... PASS (b0b535537c33ea71) 3827517
checking 'affine' ............................. PASS (8364e028bd59e0e5) 219714.6
checking 'transpose' .......................... PASS (4662cf15af9ffed4) 2284582
checking 'thresh' ............................. PASS (f55dde87036b1ac4) 1426674
checking 'channel' ............................ PASS (7d417e13c93c2396) 2233136
checking 'otsu' ............................... PASS (0ac1a37e8d92fca2) 9.425391
checking 'bwlabel' ............................ PASS (09aee993ab4d9f10) 2016822
checking 'colorLabels' ........................ PASS (4ab0dd56398e4b72) 15969784
checking 'stackObjects' ....................... PASS (098725e1c6ccea4d) 2575847
checking 'stackObjects' ....................... PASS (4a72ef17f0bfbfcd) -0.1
checking 'paintObjects' ....................... PASS (8a5b073d9bae826b) 2379341
checking 'rmObjects' .......................... PASS (8f02d0fa2f4fcc84) 1934575
checking 'reenumerate' ........................ PASS (8f02d0fa2f4fcc84) 1934575
checking 'reenumerate' ........................ PASS (09aee993ab4d9f10) 2016822
checking 'computeFeatures' .................... PASS (8056f4885b43ba71) 734993.9
checking 'computeFeatures' .................... PASS (50090732ff9f9962) 19422.3
checking 'ocontour' ........................... PASS (c3467ffca55b567e) 118072.8
checking 'localCurvature' ..................... PASS (c2e5b0512504cf2b) 117246.2
checking 'normalize' .......................... PASS (6d7b1e26a9f5c1d7) 2526618
checking 'normalize' .......................... PASS (60c18968b480bed1) 2163958
checking 'gblur' .............................. PASS (de0a0d14d96b29ff) 2237219
checking 'filter2' ............................ PASS (86e3bd89a43c1988) 56904871
checking 'medianFilter' ....................... PASS (0509e5ca92b339b9) 2231438
checking 'equalize' ........................... PASS (e6a78960f7abe096) 2447139
checking 'erode' .............................. PASS (85bbcd9bc8904b33) 1121204
checking 'dilate' ............................. PASS (76e1e639e0d94b77) 2104588
checking 'opening' ............................ PASS (f1fb32c047c57051) 1451050
checking 'closing' ............................ PASS (9da5184c566c05a1) 1569448
checking 'whiteTopHat' ........................ PASS (d76f76c59299f4ad) 12004.54
checking 'blackTopHat' ........................ PASS (048eba3e008a8e59) 20296.87
checking 'selfComplementaryTopHat' ............ PASS (4395bf239d8f1547) 4469404
checking 'distmap' ............................ PASS (117ff12dedbbc61d) 7464344
checking 'watershed' .......................... PASS (ed7ef9e2dac3efee) 1541186
checking 'floodFill' .......................... PASS (24a9d26dec0292f6) 2234521
checking 'fillHull' ........................... PASS (7fdd981ad6aaf9c7) 1541186
checking 'propagate' .......................... PASS (535d4f22991691fc) 8948876
checking 'toRGB' .............................. PASS (39e898d5b51450a5) 20279146
checking 'rgbImage' ........................... PASS (732fbb1ad737ca56) 10796552
checking 'colormap' ........................... PASS (3e9c72334d682581) 22585273
checking 'combine' ............................ PASS (679c23a11e4e7303) 8992851
checking 'combine' ............................ PASS (e22de431d55846ed) 56431472
checking 'tile' ............................... PASS (0db623d7cf758736) 72664167
checking 'untile' ............................. PASS (5ef8d21f233a5027) 60048605
checking 'abind' .............................. PASS (6a36273c2cf1181c) 9273358
>
> proc.time()
user system elapsed
3.45 1.21 7.15
EBImage.Rcheck/tests/test.Rout.save
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> ## cat tests/test.R | R --vanilla &>tests/test.Rout.save
> library("EBImage")
>
> set.seed(0) # make random color permutations in 'colorLabels' reproducible
> .digits = floor(-log10(.Machine$double.eps^.5) - 1)
>
> ## returns a hashcode given an object
> hash = function (x) .Call(digest:::digest_impl, serialize(x, connection=NULL, ascii=FALSE, xdr=FALSE), 7L, -1L, 14L, 0L, 0L, PACKAGE="digest")
>
> hash.old <- function(x) {
+ if (is.list(x) && length(x)>0) {
+ hash.old(sapply(x, hash.old, USE.NAMES=FALSE))
+ }
+ else {
+ xd <- suppressWarnings(as.numeric(x))
+ xd <- xd[!(is.nan(xd)|is.na(xd))]
+ sx <- sum(xd*(1:length(xd)))
+ if (is.matrix(xd))
+ sx + 0.7 * hash.old(dim(xd))
+ else
+ sx - 0.1
+ }
+ }
>
> ## try to evaluate fun(x,...)
> check <- function(fun, x, ..., capture.output=FALSE, suppressWarnings=FALSE, suppressMessages=FALSE, expectError=FALSE, round=FALSE, debug=FALSE) {
+ passed <- TRUE
+
+ cat(sprintf("checking \'%s\' %s ", fun, paste(rep(".", 35L-nchar(fun)), collapse = "")))
+
+ expr = quote(do.call(fun,c(list(x),list(...))))
+ if ( isTRUE(capture.output) ) expr = call("capture.output", expr)
+ if ( isTRUE(suppressWarnings) ) expr = call("suppressWarnings", expr)
+ if ( isTRUE(suppressMessages) ) expr = call("suppressMessages", expr)
+
+ y <- try(eval(expr), silent=TRUE)
+
+ if ( (inherits(y, "try-error") && !isTRUE(expectError)) || (is.Image(y) && !validObject(y)) ) {
+ y <- NULL
+ passed <- FALSE
+ }
+
+ if (passed) {
+ if (isTRUE(round) && !inherits(y, "try-error"))
+ y = if ( is.list(y) ) lapply(y, round, digits=.digits) else round(y, digits = .digits)
+ cat("PASS (", hash(y), ") ", hash.old(y), "\n", sep="")
+ }
+ else cat("FAIL\n")
+
+ if ( isTRUE(debug) ) {
+ if (is.Image(y)) show(y)
+ if (is.array(y)) display(y, all=TRUE, interpolate=FALSE)
+ else if (is.character(y)) cat(y, sep="\n")
+ }
+
+ y
+ }
>
> checkIO <- function(name) {
+ cat("checking IO for \'", name, "\' ... ", sep="")
+ x = get(name)
+ y = FALSE
+ if ( !is.null(x) ) {
+ y <- try({
+ xx <- readImage(writeImage(x, tempfile("", fileext = ".tif")))
+ dimnames(xx) <- dimnames(x)
+ identical(x, xx)
+ }, silent=TRUE)
+ }
+ if ( isTRUE(y) ) cat("PASS\n") else cat("FAIL\n")
+ invisible(y)
+ }
>
> testIOFunctions <- function(...) invisible(lapply(list(...), function(y) checkIO(y)))
>
> testEBImageFunctions <- function(x) {
+ cat("new test (hash=", hash(x), ")\n", sep="")
+
+ z <- check("show", x, capture.output=TRUE)
+ z <- check("print", x, short=TRUE, capture.output=TRUE)
+ if ( typeof(x)=="logical" )
+ z <- check("hist", EBImage:::castImage(x), breaks = c(0, .5, 1))
+ else
+ z <- check("hist", x)
+
+ ## pixel arithmetic
+ z <- check(">", x, 0.5)
+ z <- check("+", x, x)
+ z <- check("/", x, 2)
+ z <- check("*", 2L, x)
+ z <- check("median", x)
+ z <- check("quantile", x)
+
+ ## image methods
+ z <- check("Image", x, colormode="Color")
+ z <- check("as.Image", x)
+ z <- check("is.Image", x)
+ z <- check("imageData", x)
+ z <- check("imageData<-", x, z)
+ z <- check("as.raster", x)
+ z <- check("colorMode<-", x, Grayscale, suppressWarnings=TRUE)
+ y <- check("numberOfFrames", x, type="render")
+ z <- if ( y==1L ) check("getFrames", x, 1L, "render") else check("getFrames", x)
+ z <- check("display", x, method = "browser", tempDir = file.path(dirname(tempdir()), "EBImage_tmp"))
+ if ( y>2L ) {
+ z <- check("display", x, method = "raster", all = TRUE)
+ z <- check("image", x, i = 3L)
+ }
+ else {
+ z <- if (y==1L) check("display", x, method = "raster") else check("display", x, method = "raster", frame = 2L, suppressMessages=TRUE)
+ z <- check("image", x, suppressMessages=TRUE)
+ }
+
+ ## drawCircle
+ d <- dim(x)
+ c.x <- ceiling(d[1L]/2)
+ c.y <- ceiling(d[2L]/2)
+ radius <- max(c.x-1, 1)
+ nf <- numberOfFrames(x, "render")
+ fill <- nf > 1
+ col <- if ( colorMode(x)==Color ) "yellow" else 1
+ z <- check("drawCircle", x, c.x, c.x, radius, col, fill, nf)
+
+ ## subset
+ sub <- list(x, 1:min(10,d[1L]), 1:min(7,d[2L]))
+ if (length(d)>2) sub <- c(sub, rep(TRUE, length(d)-2))
+ z <- do.call("check", c("[", sub))
+
+ ## spatial transform
+ z <- check("resize", x, 137, 22)
+ z <- check("rotate", x, 20)
+ z <- check("flip", x)
+ z <- check("flop", x)
+ z <- check("translate", x, c(-7, 5), bg.col=1)
+ z <- check("affine", x, matrix(c(-7, 5, 0.1, -0.2, 0.3, 1), ncol=2L))
+ z <- check("transpose", x)
+
+ ## segmentation
+ fd = pmin(5, (d[1:2]-1)/2)
+ z <- check("thresh", x, w=fd[1L], h=fd[2L])
+ y <- check("channel", x, "luminance")
+ z <- check("otsu", y)
+ y <- suppressWarnings(normalize(y, separate=FALSE))
+ y <- check("bwlabel", y > 0.5)
+ z <- check("colorLabels", y, suppressWarnings=TRUE)
+ z <- check("stackObjects", y, x)
+ z <- check("stackObjects", Image(dim=dim(y)), x)
+ cls <- if ( colorMode(x)==Color ) TRUE else FALSE
+ z <- check("paintObjects", y, x, col=c("#ff00ff", "#ffff00"), opac=c(1.0, 0.5), thick=cls, closed=cls)
+ z <- check("rmObjects", y, as.list(seq_len(numberOfFrames(y))), cls)
+ z <- check("reenumerate", z)
+ z <- check("reenumerate", y)
+
+ ## features
+ x1 <- getFrame(x, 1)
+ x2 <- list(x=x1, y=2*x1)
+ y1 <- getFrame(y, 1)
+ expandRef <- if ( min(dim(x1)) > 31L ) function(ref, refnames) standardExpandRef(ref, refnames, gblob(n=31L)) else NULL
+ z <- check("computeFeatures", y1, x2, expandRef = expandRef, round = !is.null(expandRef))
+ z <- check("computeFeatures", y1, x2, expandRef = expandRef, properties = TRUE)
+
+ ## curvature
+ y <- check("ocontour", x>0.5)
+ if (length(y) > 0L ) z <- check("localCurvature", y[[1L]], round=TRUE)
+
+ ## filtering
+ z <- check("normalize", x, suppressWarnings=TRUE)
+ z <- check("normalize", x, inputRange=c(0.1, 0.9), suppressWarnings=TRUE)
+ z <- check("gblur", x, sigma=1, expectError=min(d)<7, round=TRUE)
+ y <- if (cls) "replicate" else if (nf>1) 0.5 else "circular"
+ z <- check("filter2", x, array(1, dim=c(5, 5)), y, round=TRUE)
+ z <- check("medianFilter", x, 2)
+ z <- check("equalize", x, suppressWarnings=TRUE)
+
+ ## morphological operations
+ y <- x > 0.5
+ z <- check("erode", y)
+ z <- check("dilate", y, makeBrush(5, 'disc'))
+ z <- check("opening", y, makeBrush(7, 'line'))
+ z <- check("closing", y, makeBrush(4, 'line', angle=0), suppressWarnings=TRUE)
+ z <- check("whiteTopHat", x, makeBrush(3, 'box'))
+ z <- check("blackTopHat", x, makeBrush(5, 'disc'))
+ z <- check("selfComplementaryTopHat", x)
+ z <- check("distmap", y)
+ z <- check("watershed", z)
+ z <- check('floodFill', x, c(5, 5), 0.5)
+ z <- check('fillHull', y)
+
+ ## propagate
+ y <- thresh(x, w=fd[1L], h=fd[2L], offset=0.02)
+ y <- fillHull(y)
+ y <- bwlabel(y)
+ z <- check("propagate", x, y, x>0.5)
+
+ ## colorspace
+ z <- check("toRGB", x)
+ z <- check("rgbImage", x, x>0.5)
+ z <- check("colormap", channel(x, "luminance"), heat.colors(16L))
+
+ ## image stacking, combining, tiling
+ y <- check("combine", list(NULL, x, x, NULL, NULL))
+ z <- check("combine", x, y, y)
+ y <- check("tile", z, nx=3)
+ z <- check("untile", y, c(3, 2))
+ y <- check("abind", list(x, x), along=length(d)+1L)
+ cat("\n")
+ }
>
>
> ## check error handling
> try.readImage <- function(...) tryCatch(suppressWarnings(readImage(...)), error = function(e) NULL)
> mock <- try.readImage(system.file("images", package="EBImage"), type="png")
> mock <- try.readImage("http://www.huber.embl.de/EBImage/missing.file ", type="png")
>
> ## single greyscale and color images
> sample <- try.readImage(system.file("images","sample.png", package="EBImage"))
> sample.color <- try.readImage(system.file("images","sample-color.png", package="EBImage"))
> ## multi-frame image stack
> f = system.file("images","nuclei.tif", package="EBImage")
> nuclei = try.readImage(c(f, f))
> ## test reading from URL
> logo <- try.readImage("http://www.huber.embl.de/EBImage/logo.png")
>
> ## test: IO operations
> testIOFunctions("sample", "sample.color", "nuclei", "logo")
checking IO for 'sample' ... PASS
checking IO for 'sample.color' ... PASS
checking IO for 'nuclei' ... PASS
checking IO for 'logo' ... PASS
Warning message:
In readTIFF(x, all = all, ...) :
TIFFReadDirectory: Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.
>
> ## test: black image
> testEBImageFunctions(Image(0, c(8, 8)))
new test (hash=03724aaea0cf64b4)
checking 'show' ............................... PASS (5a93d2a87828912b) -0.1
checking 'print' .............................. PASS (0007ac6dee6a14da) -0.1
checking 'hist' ............................... PASS (8ef6dc298b72d591) Inf
checking '>' .................................. PASS (91517a74c2895221) -0.1
checking '+' .................................. PASS (03724aaea0cf64b4) -0.1
checking '/' .................................. PASS (03724aaea0cf64b4) -0.1
checking '*' .................................. PASS (03724aaea0cf64b4) -0.1
checking 'median' ............................. PASS (8396e8397399bb05) -0.1
checking 'quantile' ........................... PASS (5e6b34b7d87730f0) -0.1
checking 'Image' .............................. PASS (e4b04ad17c704314) -0.1
checking 'as.Image' ........................... PASS (03724aaea0cf64b4) -0.1
checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
checking 'imageData' .......................... PASS (1ba6fa2bac2e6157) -0.1
checking 'imageData<-' ........................ PASS (03724aaea0cf64b4) -0.1
checking 'as.raster' .......................... PASS (e8f1c1057deba532) -0.1
checking 'colorMode<-' ........................ PASS (03724aaea0cf64b4) -0.1
checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
checking 'getFrames' .......................... PASS (437d348905e7edea) -0.2
checking 'display' ............................ PASS (4c9befc7a9f9f22e) 165.3
checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
checking 'drawCircle' ......................... PASS (76ab1bcd040f633c) 447.9
checking '[' .................................. PASS (3c13b8fa403f3a61) -0.1
checking 'resize' ............................. PASS (59b56ab6bbfb3b98) -0.1
checking 'rotate' ............................. PASS (d9d1aa63f93f02d0) -0.1
checking 'flip' ............................... PASS (03724aaea0cf64b4) -0.1
checking 'flop' ............................... PASS (03724aaea0cf64b4) -0.1
checking 'translate' .......................... PASS (8f2e405bb6973b4a) 1932.9
checking 'affine' ............................. PASS (03724aaea0cf64b4) -0.1
checking 'transpose' .......................... PASS (03724aaea0cf64b4) -0.1
checking 'thresh' ............................. PASS (c13bdaf3a3ddff95) -0.1
checking 'channel' ............................ PASS (03724aaea0cf64b4) -0.1
checking 'otsu' ............................... PASS (e3b39ef666a0ce39) -0.09804688
checking 'bwlabel' ............................ PASS (c13bdaf3a3ddff95) -0.1
checking 'colorLabels' ........................ PASS (73c6f975aa7b9638) -0.1
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'paintObjects' ....................... PASS (03724aaea0cf64b4) -0.1
checking 'rmObjects' .......................... PASS (c13bdaf3a3ddff95) -0.1
checking 'reenumerate' ........................ PASS (c13bdaf3a3ddff95) -0.1
checking 'reenumerate' ........................ PASS (c13bdaf3a3ddff95) -0.1
checking 'computeFeatures' .................... PASS (d956c282ac7180e4) -0.1
checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 19422.3
checking 'ocontour' ........................... PASS (0cbbfbd6c2b5057a) -0.1
checking 'normalize' .......................... PASS (03724aaea0cf64b4) -0.1
checking 'normalize' .......................... PASS (03724aaea0cf64b4) -0.1
checking 'gblur' .............................. PASS (03724aaea0cf64b4) -0.1
checking 'filter2' ............................ PASS (03724aaea0cf64b4) -0.1
checking 'medianFilter' ....................... PASS (03724aaea0cf64b4) -0.1
checking 'equalize' ........................... PASS (03724aaea0cf64b4) -0.1
checking 'erode' .............................. PASS (91517a74c2895221) -0.1
checking 'dilate' ............................. PASS (91517a74c2895221) -0.1
checking 'opening' ............................ PASS (91517a74c2895221) -0.1
checking 'closing' ............................ PASS (91517a74c2895221) -0.1
checking 'whiteTopHat' ........................ PASS (03724aaea0cf64b4) -0.1
checking 'blackTopHat' ........................ PASS (03724aaea0cf64b4) -0.1
checking 'selfComplementaryTopHat' ............ PASS (03724aaea0cf64b4) -0.1
checking 'distmap' ............................ PASS (03724aaea0cf64b4) -0.1
checking 'watershed' .......................... PASS (c13bdaf3a3ddff95) -0.1
checking 'floodFill' .......................... PASS (b7521415b91cdd6a) 1039.9
checking 'fillHull' ........................... PASS (91517a74c2895221) -0.1
checking 'propagate' .......................... PASS (c13bdaf3a3ddff95) -0.1
checking 'toRGB' .............................. PASS (73c6f975aa7b9638) -0.1
checking 'rgbImage' ........................... PASS (73c6f975aa7b9638) -0.1
checking 'colormap' ........................... PASS (f55f763f0bce6d0e) 2079.9
checking 'combine' ............................ PASS (7d8cabf23a7147bf) -0.1
checking 'combine' ............................ PASS (dfe23dd6a6fd08b8) -0.1
checking 'tile' ............................... PASS (63b8539b976f10f9) 42140.88
checking 'untile' ............................. PASS (fc2ab5092822346e) 16809.31
checking 'abind' .............................. PASS (7d8cabf23a7147bf) -0.1
>
> ## test: white image
> testEBImageFunctions(Image(1L, c(5, 5)))
new test (hash=5e369a5a8c06ea6e)
checking 'show' ............................... PASS (d7ff39dcf34291a7) -0.1
checking 'print' .............................. PASS (423045c171032825) -0.1
checking 'hist' ............................... PASS (c32dc2571db86a0f) Inf
checking '>' .................................. PASS (ab60d77d8694845c) 324.9
checking '+' .................................. PASS (ccb4c957b356b423) 649.9
checking '/' .................................. PASS (e68dd3c4bf42ae06) 162.4
checking '*' .................................. PASS (ccb4c957b356b423) 649.9
checking 'median' ............................. PASS (7c79dea3bfc1415b) 0.9
checking 'quantile' ........................... PASS (03ab24e6a573bd6b) 14.9
checking 'Image' .............................. PASS (e06d5f65342df035) 324.9
checking 'as.Image' ........................... PASS (5e369a5a8c06ea6e) 324.9
checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
checking 'imageData' .......................... PASS (a72e950dc2c633c4) 324.9
checking 'imageData<-' ........................ PASS (5e369a5a8c06ea6e) 324.9
checking 'as.raster' .......................... PASS (76158aebe747f7e1) -0.1
checking 'colorMode<-' ........................ PASS (5e369a5a8c06ea6e) 324.9
checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
checking 'getFrames' .......................... PASS (5be9802bf124fe9c) 324.8
checking 'display' ............................ PASS (174250a6d96dee60) 150.3
checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
checking 'drawCircle' ......................... PASS (a3847050dd15905c) 324.9
checking '[' .................................. PASS (5e369a5a8c06ea6e) 324.9
checking 'resize' ............................. PASS (81601207cc4e4223) 4543605
checking 'rotate' ............................. PASS (3db98677c68c5102) 483.6843
checking 'flip' ............................... PASS (5e369a5a8c06ea6e) 324.9
checking 'flop' ............................... PASS (5e369a5a8c06ea6e) 324.9
checking 'translate' .......................... PASS (a3847050dd15905c) 324.9
checking 'affine' ............................. PASS (92683959c9ed97c3) 39.9
checking 'transpose' .......................... PASS (5e369a5a8c06ea6e) 324.9
checking 'thresh' ............................. PASS (dafc92132d191221) -0.1
checking 'channel' ............................ PASS (5e369a5a8c06ea6e) 324.9
checking 'otsu' ............................... PASS (2abebb5cf42f343e) 0.8980469
checking 'bwlabel' ............................ PASS (5e369a5a8c06ea6e) 324.9
checking 'colorLabels' ........................ PASS (a7e8ce686b7c6eec) 2849.9
checking 'stackObjects' ....................... PASS (995b03d1197fdd56) 324.9
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'paintObjects' ....................... PASS (fbe94deb2c7c7e12) 270.7333
checking 'rmObjects' .......................... PASS (dafc92132d191221) -0.1
checking 'reenumerate' ........................ PASS (dafc92132d191221) -0.1
checking 'reenumerate' ........................ PASS (5e369a5a8c06ea6e) 324.9
checking 'computeFeatures' .................... PASS (1e197f38fe3db7df) 950932.9
checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 19422.3
checking 'ocontour' ........................... PASS (1ad47b9dc5e279b9) 1087.8
checking 'localCurvature' ..................... PASS (07aef8b9d0c42e30) 1008.955
checking 'normalize' .......................... PASS (a3847050dd15905c) 324.9
checking 'normalize' .......................... PASS (a3847050dd15905c) 324.9
checking 'gblur' .............................. PASS (34be5e3328df689f) -0.1
checking 'filter2' ............................ PASS (046936d9c22a44d3) 8124.9
checking 'medianFilter' ....................... PASS (a3847050dd15905c) 324.9
checking 'equalize' ........................... PASS (5e369a5a8c06ea6e) 324.9
checking 'erode' .............................. PASS (ab60d77d8694845c) 324.9
checking 'dilate' ............................. PASS (ab60d77d8694845c) 324.9
checking 'opening' ............................ PASS (ab60d77d8694845c) 324.9
checking 'closing' ............................ PASS (ab60d77d8694845c) 324.9
checking 'whiteTopHat' ........................ PASS (dafc92132d191221) -0.1
checking 'blackTopHat' ........................ PASS (dafc92132d191221) -0.1
checking 'selfComplementaryTopHat' ............ PASS (ccb4c957b356b423) 649.9
checking 'distmap' ............................ PASS (4620168ff1c2a437) Inf
checking 'watershed' .......................... PASS (5e369a5a8c06ea6e) 324.9
checking 'floodFill' .......................... PASS (dafc92132d191221) -0.1
checking 'fillHull' ........................... PASS (ab60d77d8694845c) 324.9
checking 'propagate' .......................... PASS (dafc92132d191221) -0.1
checking 'toRGB' .............................. PASS (f3b87c6a40e54c68) 2849.9
checking 'rgbImage' ........................... PASS (a1c021690e069b07) 1274.9
checking 'colormap' ........................... PASS (948ec87fd2adc7a9) 2652.253
checking 'combine' ............................ PASS (8c39678924e12a09) 1274.9
checking 'combine' ............................ PASS (072d49f53072e43b) 7874.9
checking 'tile' ............................... PASS (16eb65ee8bbcb932) 24420.64
checking 'untile' ............................. PASS (8bcebbd606485233) 10445.49
checking 'abind' .............................. PASS (8c39678924e12a09) 1274.9
>
> ## test: 2D Grayscale 64x48
> x <- nuclei[50:113,208:255,2]
> testEBImageFunctions(as.array(x))
new test (hash=3e469356855e6210)
checking 'show' ............................... PASS (0c6212669ee6288d) -0.1
checking 'print' .............................. PASS (0c6212669ee6288d) -0.1
checking 'hist' ............................... PASS (e7a708b4f96f88dc) 20513.55
checking '>' .................................. PASS (0a927a877b0b85eb) 1217568
checking '+' .................................. PASS (2c51607a58b46974) 2940144
checking '/' .................................. PASS (a872fc97379d58f5) 735035.9
checking '*' .................................. PASS (2c51607a58b46974) 2940144
checking 'median' ............................. PASS (d2a8be6a346c3d28) 0.04509804
checking 'quantile' ........................... PASS (645f4aadbce7bdea) 7.331373
checking 'Image' .............................. PASS (923c3911d773eb6e) 1470072
checking 'as.Image' ........................... PASS (b7ae9a016c5a19ec) 1470072
checking 'is.Image' ........................... PASS (69f0cf1cfd5cd8ed) -0.1
checking 'imageData' .......................... PASS (3e469356855e6210) 1470072
checking 'imageData<-' ........................ PASS (3e469356855e6210) 1470072
checking 'as.raster' .......................... PASS (42efa6b3b04694cf) -0.1
checking 'colorMode<-' ........................ PASS (b8d002268bfac3eb) -0.1
checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
checking 'getFrames' .......................... PASS (d38b8f6c1a1504a8) 1470072
checking 'display' ............................ PASS (dada341199e50c3d) 397.3
checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
checking 'drawCircle' ......................... PASS (872845fa91c628a6) 1607165
checking '[' .................................. PASS (711703fde7cc915e) 48.94314
checking 'resize' ............................. PASS (7882055c8b670bf4) 1419476
checking 'rotate' ............................. PASS (559860bb5c99cb82) 2493977
checking 'flip' ............................... PASS (8834ca70d449207a) 1195977
checking 'flop' ............................... PASS (d73abd773dfc066a) 1462119
checking 'translate' .......................... PASS (5744e19288b9d7f0) 2133961
checking 'affine' ............................. PASS (11616142290451c1) 54171.17
checking 'transpose' .......................... PASS (aa87d51a100b139f) 1522055
checking 'thresh' ............................. PASS (c790c6a6872d73d0) 1262811
checking 'channel' ............................ PASS (3e469356855e6210) 1470072
checking 'otsu' ............................... PASS (3aea1e91f3716bcb) 0.3160156
checking 'bwlabel' ............................ PASS (5055cb94d5293a15) 1199387
checking 'colorLabels' ........................ PASS (464d65c8da42be0d) 10021713
checking 'stackObjects' ....................... PASS (c5669f863a2ba20e) 718602.9
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'paintObjects' ....................... PASS (19a9fbb907cee1c4) 1447733
checking 'rmObjects' .......................... PASS (365ace8a4657cb08) -0.1
checking 'reenumerate' ........................ PASS (365ace8a4657cb08) -0.1
checking 'reenumerate' ........................ PASS (5055cb94d5293a15) 1199387
checking 'computeFeatures' .................... PASS (f59aa3f08e782acf) 3634215
checking 'computeFeatures' .................... PASS (4e7e75f941531854) 145634.3
checking 'ocontour' ........................... PASS (790a5f5b45092d41) 1050552
checking 'localCurvature' ..................... PASS (fb6d4b13b08dcac4) 1049392
checking 'normalize' .......................... PASS (1f79956b7887dd73) 1431381
checking 'normalize' .......................... PASS (13a2d37d997199f9) 1266798
checking 'gblur' .............................. PASS (203a6d72b1fd5eba) 1466231
checking 'filter2' ............................ PASS (c82a1ece6902714d) 36592176
checking 'medianFilter' ....................... PASS (4140c87b3a1db93d) 1454712
checking 'equalize' ........................... PASS (ba175363e5576ad1) 2642794
checking 'erode' .............................. PASS (bee7898f6d8d547b) 759774.9
checking 'dilate' ............................. PASS (ed04adac54c645fd) 1797576
checking 'opening' ............................ PASS (d1c6ca8aafbd90cb) 1152484
checking 'closing' ............................ PASS (b8cf094b52fe1744) 1232737
checking 'whiteTopHat' ........................ PASS (9b53631dd222dd50) 18730.15
checking 'blackTopHat' ........................ PASS (089cd73847d97de5) 27716.23
checking 'selfComplementaryTopHat' ............ PASS (cc378ce1d0553ecd) 2929436
checking 'distmap' ............................ PASS (f98a44bf21faa222) 3826969
checking 'watershed' .......................... PASS (b39c109238f0c74b) 2762113
checking 'floodFill' .......................... PASS (c59341ffade6129a) 1470197
checking 'fillHull' ........................... PASS (0a927a877b0b85eb) 1217568
checking 'propagate' .......................... PASS (cec466bef7a2a81e) 3464201
checking 'toRGB' .............................. PASS (5051d2b131286d46) 12381911
checking 'rgbImage' ........................... PASS (ccc09b31890cd8df) 4859544
checking 'colormap' ........................... PASS (b7020f3851eb7d7c) 11126039
checking 'combine' ............................ PASS (5bda9f75cbc23401) 5597376
checking 'combine' ............................ PASS (306e27bb3ec346e6) 33922678
checking 'tile' ............................... PASS (870e7501fa1f3338) 78718054
checking 'untile' ............................. PASS (868893e062dea032) 72597772
checking 'abind' .............................. PASS (5bda9f75cbc23401) 5597376
>
> ## test: 2D Color 32x48x1
> x <- sample[1:32, 1:48]
> testEBImageFunctions(Image(as.vector(x), dim(x), Color))
new test (hash=7718e616f411c340)
checking 'show' ............................... PASS (1a2c30323dd5a8ee) -0.1
checking 'print' .............................. PASS (e9fad67b70709e2b) -0.1
checking 'hist' ............................... PASS (596b544e7cd6f458) 130241.3
checking '>' .................................. PASS (e72c38d763e5fabf) 988518.9
checking '+' .................................. PASS (e38cf73f1c0c88a2) 1531522
checking '/' .................................. PASS (df4e8bf818fc26fe) 382880.4
checking '*' .................................. PASS (e38cf73f1c0c88a2) 1531522
checking 'median' ............................. PASS (fc60ee4b14ba4a28) 0.5039216
checking 'quantile' ........................... PASS (436f03b8c9c3ad0e) 10.10392
checking 'Image' .............................. PASS (7718e616f411c340) 765760.9
checking 'as.Image' ........................... PASS (7718e616f411c340) 765760.9
checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
checking 'imageData' .......................... PASS (19c51d4d9d30d60c) 765760.9
checking 'imageData<-' ........................ PASS (7718e616f411c340) 765760.9
checking 'as.raster' .......................... PASS (05c68b3f51ec838b) -0.1
checking 'colorMode<-' ........................ PASS (733871e596e328df) 765760.9
checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
checking 'getFrames' .......................... PASS (681aab4c8a24c6c5) 765760.8
checking 'display' ............................ PASS (bb2b4586191eb980) 333.3
checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
checking 'drawCircle' ......................... PASS (a6757bb66994b1f7) 782100.7
checking '[' .................................. PASS (25a626878222798c) 1285.273
checking 'resize' ............................. PASS (bb1209a84d6b3709) 2941770
checking 'rotate' ............................. PASS (924fc66d1ec91d44) 1247487
checking 'flip' ............................... PASS (828db3b8ad878bd6) 661525.2
checking 'flop' ............................... PASS (f69b431f36c97abd) 768451.1
checking 'translate' .......................... PASS (3eb2fe0d22e461ed) 820434.5
checking 'affine' ............................. PASS (7a760844869cec92) 22238.15
checking 'transpose' .......................... PASS (d438f72715d302ed) 652051.4
checking 'thresh' ............................. PASS (8b3a72b493ab8540) 382924.9
checking 'channel' ............................ PASS (3982766c7e1077b3) 162800.7
checking 'otsu' ............................... PASS (ebd9ed7a0cf4831d) 0.03085937
checking 'bwlabel' ............................ PASS (498723eb57bcca48) 832970.9
checking 'colorLabels' ........................ PASS (ecbf282c48506ef2) 3692613
checking 'stackObjects' ....................... PASS (e30de50cc1d8e117) 596493.9
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'paintObjects' ....................... PASS (9b5026b178720a80) 919069.9
checking 'rmObjects' .......................... PASS (e0ab50f8e544290a) 565.9
checking 'reenumerate' ........................ PASS (e0ab50f8e544290a) 565.9
checking 'reenumerate' ........................ PASS (498723eb57bcca48) 832970.9
checking 'computeFeatures' .................... PASS (c1ff2e62e7bb8eee) 3989786
checking 'computeFeatures' .................... PASS (4e7e75f941531854) 145634.3
checking 'ocontour' ........................... PASS (ced9c409ca879dc9) 848253.8
checking 'localCurvature' ..................... PASS (25e900bf67a8cdb0) 847428.3
checking 'normalize' .......................... PASS (b8b2cfe4f431fc83) 747801.4
checking 'normalize' .......................... PASS (3ee0aade2890ed53) 809649.2
checking 'gblur' .............................. PASS (0c28ab262af637d1) 761679.3
checking 'filter2' ............................ PASS (bf01322f9e0aed7a) 19130329
checking 'medianFilter' ....................... PASS (189cf2d04b2316f5) 765141.6
checking 'equalize' ........................... PASS (b525d614a289c5a3) 705546.8
checking 'erode' .............................. PASS (84add15c6fa8ac14) 908526.9
checking 'dilate' ............................. PASS (e99e1ecfd4ef49d3) 1072658
checking 'opening' ............................ PASS (80d457c0bcd57e44) 985798.9
checking 'closing' ............................ PASS (cc9339fed43d2c52) 988727.9
checking 'whiteTopHat' ........................ PASS (25444773943cf26b) 3572.998
checking 'blackTopHat' ........................ PASS (10fae7d8c0f86c96) 7139.473
checking 'selfComplementaryTopHat' ............ PASS (2f97211e82aa8221) 1533178
checking 'distmap' ............................ PASS (218b9e66643db8d3) 12740449
checking 'watershed' .......................... PASS (6edd3aa33ad54089) 988518.9
checking 'floodFill' .......................... PASS (228b47626610f8c9) 765755.4
checking 'fillHull' ........................... PASS (e72c38d763e5fabf) 988518.9
checking 'propagate' .......................... PASS (73d53b87d72f0409) 26630579
checking 'toRGB' .............................. PASS (7718e616f411c340) 765760.9
checking 'rgbImage' ........................... PASS (6df3c3d16757cdd6) 3520680
checking 'colormap' ........................... PASS (8e7f90c18580cd50) 1816912
checking 'combine' ............................ PASS (f156de3e1aff037c) 2960568
checking 'combine' ............................ PASS (1bfd38ce66379070) 18119267
checking 'tile' ............................... PASS (3f8e8f9b949597b4) 33061491
checking 'untile' ............................. PASS (9f839c04542fa7e4) 27788327
checking 'abind' .............................. PASS (a65f1e1e2d249be6) 2960568
>
> ## test: 3D Color 65x17x3
> x <- sample.color[1:65, 1:17,]
> testEBImageFunctions(x)
new test (hash=3884fe38962577a7)
checking 'show' ............................... PASS (8331bd653405c3be) -0.1
checking 'print' .............................. PASS (de22d3dc188680fd) -0.1
checking 'hist' ............................... PASS (10b008981f19c77a) 348464.1
checking '>' .................................. PASS (e6c8a64e9fff6055) 1058553
checking '+' .................................. PASS (5bb860f09b56b4d9) 4072301
checking '/' .................................. PASS (17b2c344ff60cf34) 1018075
checking '*' .................................. PASS (5bb860f09b56b4d9) 4072301
checking 'median' ............................. PASS (a9ae52973fed588b) 0.2333333
checking 'quantile' ........................... PASS (e51be80ed6288f06) 7.280392
checking 'Image' .............................. PASS (3884fe38962577a7) 2036151
checking 'as.Image' ........................... PASS (3884fe38962577a7) 2036151
checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
checking 'imageData' .......................... PASS (1456dcb0ab2d690b) 2036151
checking 'imageData<-' ........................ PASS (3884fe38962577a7) 2036151
checking 'as.raster' .......................... PASS (abd1d3d0d6329777) -0.1
checking 'colorMode<-' ........................ PASS (0aa63faa9d4e0838) 2036151
checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
checking 'getFrames' .......................... PASS (2ed277d7e69a05d2) 2036151
checking 'display' ............................ PASS (3d646d4f07d194ba) 306.3
checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
checking 'drawCircle' ......................... PASS (5175a6622762681a) 2049936
checking '[' .................................. PASS (c60784a663dd1761) 9950.096
checking 'resize' ............................. PASS (fe9aa55b037def9d) 15155777
checking 'rotate' ............................. PASS (2a6f5001ae7d116d) 4525312
checking 'flip' ............................... PASS (192932ac94cae831) 1977928
checking 'flop' ............................... PASS (55c97a05ee9ed805) 2048664
checking 'translate' .......................... PASS (c866b3232cda2c68) 2998417
checking 'affine' ............................. PASS (517c3559acf97cf4) 226067.6
checking 'transpose' .......................... PASS (e6349d8cc35ed017) 1907377
checking 'thresh' ............................. PASS (e98d9e4246c476a4) 954376.9
checking 'channel' ............................ PASS (84d92148a5eda650) 257578.5
checking 'otsu' ............................... PASS (6a2131f538a2a53e) 0.3316406
checking 'bwlabel' ............................ PASS (2fa4cf414bbb7787) 230329.9
checking 'colorLabels' ........................ PASS (b71e0c0d93c0ba5d) 1920855
checking 'stackObjects' ....................... PASS (f30668520190ffed) 712799.6
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'paintObjects' ....................... PASS (6a1ba970169d82ad) 2090128
checking 'rmObjects' .......................... PASS (3705fc84a07dd0cd) -0.1
checking 'reenumerate' ........................ PASS (3705fc84a07dd0cd) -0.1
checking 'reenumerate' ........................ PASS (2fa4cf414bbb7787) 230329.9
checking 'computeFeatures' .................... PASS (a33c53edd3cf8a46) 746878.2
checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 19422.3
checking 'ocontour' ........................... PASS (1be2808a87ee437f) 117866.8
checking 'localCurvature' ..................... PASS (ad1fddb421e46506) 116636.2
checking 'normalize' .......................... PASS (edb5f31f14cd540d) 1788995
checking 'normalize' .......................... PASS (6a1005a2ed478c1e) 1858155
checking 'gblur' .............................. PASS (c61849c1f4dc6d25) 2029979
checking 'filter2' ............................ PASS (760ded68d0c55bfa) 50878763
checking 'medianFilter' ....................... PASS (0b06f73d5aecad7d) 2034604
checking 'equalize' ........................... PASS (2d4d0558bb48cbfc) 2942981
checking 'erode' .............................. PASS (94112a39c70cd747) 830816.9
checking 'dilate' ............................. PASS (a9fbe5f3b81787ec) 1339263
checking 'opening' ............................ PASS (957aea2990d2caa1) 1013295
checking 'closing' ............................ PASS (7af64e74f8e80dbb) 1069405
checking 'whiteTopHat' ........................ PASS (d50f6d3e0e26602d) 16585.63
checking 'blackTopHat' ........................ PASS (310953bdffbb07ee) 22039.05
checking 'selfComplementaryTopHat' ............ PASS (dfefa629c102a00d) 4071763
checking 'distmap' ............................ PASS (6c03a6a34b67eec0) 6038778
checking 'watershed' .......................... PASS (61ebc564dd827878) 1058553
checking 'floodFill' .......................... PASS (f537dd1499704563) 2036854
checking 'fillHull' ........................... PASS (e6c8a64e9fff6055) 1058553
checking 'propagate' .......................... PASS (7b81c961226b8218) 7755487
checking 'toRGB' .............................. PASS (3884fe38962577a7) 2036151
checking 'rgbImage' ........................... PASS (43e895266c1b7cae) 7617867
checking 'colormap' ........................... PASS (972e374a8a23c0e1) 1657338
checking 'combine' ............................ PASS (d56bf3140c7cd055) 8350133
checking 'combine' ............................ PASS (b21bd2c702883543) 52959073
checking 'tile' ............................... PASS (4f60a4ae167b4e6e) 107188639
checking 'untile' ............................. PASS (05afb65e638c5769) 97994583
checking 'abind' .............................. PASS (d56bf3140c7cd055) 8350133
>
> ## test: 3D Grayscale logical 32x32x2
> x <- sample[32:63, 32:63]
> x <- x > otsu(x)
> x <- combine(x, x)
> testEBImageFunctions(x)
new test (hash=db12fa8044d98567)
checking 'show' ............................... PASS (75018abdcca926f0) -0.1
checking 'print' .............................. PASS (9bacee8faec96053) -0.1
checking 'hist' ............................... PASS (f0f3640c0aa89c38) 5855.343
checking '>' .................................. PASS (db12fa8044d98567) 1055560
checking '+' .................................. PASS (0b5a21f5cc627e62) 2111120
checking '/' .................................. PASS (bf2545eee0c6aa3e) 527779.9
checking '*' .................................. PASS (0b5a21f5cc627e62) 2111120
checking 'median' ............................. PASS (8396e8397399bb05) -0.1
checking 'quantile' ........................... PASS (130a179fb028f1a7) 8.9
checking 'Image' .............................. PASS (041d3981bcab3129) 1055560
checking 'as.Image' ........................... PASS (db12fa8044d98567) 1055560
checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
checking 'imageData' .......................... PASS (6b02d87cd459ac19) 1055560
checking 'imageData<-' ........................ PASS (db12fa8044d98567) 1055560
checking 'as.raster' .......................... PASS (26cf978328d1a712) -0.1
checking 'colorMode<-' ........................ PASS (db12fa8044d98567) 1055560
checking 'numberOfFrames' ..................... PASS (161e41d6aa749739) 1.9
checking 'getFrames' .......................... PASS (ce29246f73d959c3) 916715.6
checking 'display' ............................ PASS (2fb2fcab54a4ea5a) 285.3
checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
checking 'drawCircle' ......................... PASS (1180c20b46fdaf4e) 1656514
checking '[' .................................. PASS (2a55f6dafc492b42) 1889.9
checking 'resize' ............................. PASS (211e86386b1010af) 9108608
checking 'rotate' ............................. PASS (d67e39e3cb07d275) 1600126
checking 'flip' ............................... PASS (fbb2a6f78f2cc7f1) 714439.9
checking 'flop' ............................... PASS (f6825dda37058381) 1064092
checking 'translate' .......................... PASS (8d027c3127938636) 1105982
checking 'affine' ............................. PASS (a6e552f84324fe21) 133467.8
checking 'transpose' .......................... PASS (eeeb148d04107340) 758083.9
checking 'thresh' ............................. PASS (5b7b2d141f385123) 824497.9
checking 'channel' ............................ PASS (db12fa8044d98567) 1055560
checking 'otsu' ............................... PASS (69c60dc99d5066e3) 1.4
checking 'bwlabel' ............................ PASS (10092f8e4256496b) 1597368
checking 'colorLabels' ........................ PASS (ebf6961f64378f97) 5485361
checking 'stackObjects' ....................... PASS (d1d99850ff4d6d38) 8889538
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'paintObjects' ....................... PASS (8c5ef6f490aa8762) 834266.6
checking 'rmObjects' .......................... PASS (0a1cd72f8d3c03e8) 1303423
checking 'reenumerate' ........................ PASS (df75276eeec5813d) 1244828
checking 'reenumerate' ........................ PASS (10092f8e4256496b) 1597368
checking 'computeFeatures' .................... PASS (1bf064e6a11f2410) 416164140
checking 'computeFeatures' .................... PASS (4e7e75f941531854) 145634.3
checking 'ocontour' ........................... PASS (9f7d90d6312e32f3) 836958.8
checking 'localCurvature' ..................... PASS (477746e4fee34aeb) 835041.5
checking 'normalize' .......................... PASS (eea76285d45436f7) 1055560
checking 'normalize' .......................... PASS (eea76285d45436f7) 1055560
checking 'gblur' .............................. PASS (9224b720f9d00006) 1037581
checking 'filter2' ............................ PASS (637287a5df76a79d) 26149148
checking 'medianFilter' ....................... PASS (ed8d722e63a36a34) 1030730
checking 'equalize' ........................... PASS (eea76285d45436f7) 1055560
checking 'erode' .............................. PASS (54ccd3aba098da92) 617311.9
checking 'dilate' ............................. PASS (3f0aed5a551e26b5) 1591594
checking 'opening' ............................ PASS (ae3c29b4498904c5) 861145.9
checking 'closing' ............................ PASS (2e26e13058dee387) 1188258
checking 'whiteTopHat' ........................ PASS (28bbffedc1bcb297) 148131.9
checking 'blackTopHat' ........................ PASS (a862285882d4249e) 202411.9
checking 'selfComplementaryTopHat' ............ PASS (92483d40b14844db) 2151192
checking 'distmap' ............................ PASS (766610b2223767b0) 3856630
checking 'watershed' .......................... PASS (eaba5359a5afa00e) 1443978
checking 'floodFill' .......................... PASS (0db2bbd3a6d9a773) 2057384
checking 'fillHull' ........................... PASS (ccded36693237a0e) 1096352
checking 'propagate' .......................... PASS (e3c3ba3dd998f78f) 1613920
checking 'toRGB' .............................. PASS (a594b4f9b88125f1) 8499672
checking 'rgbImage' ........................... PASS (172b07d65c57f496) 4777616
checking 'colormap' ........................... PASS (a6b9bc2f3472cbee) 10283526
checking 'combine' ............................ PASS (f13e4c8ca8445cd0) 3888784
checking 'combine' ............................ PASS (d8a9b6cf082a9146) 23054440
checking 'tile' ............................... PASS (4c3d7086d0c2c786) 48846817
checking 'untile' ............................. PASS (65365043e983ec58) 41221063
checking 'abind' .............................. PASS (af0697002f77c709) 3888784
>
> ## test: 4D Color 33x16x3x2
> x <- sample.color[1:33, 1:16,]
> x <- combine(x, x)
> testEBImageFunctions(x)
new test (hash=290d7a45d7468e5f)
checking 'show' ............................... PASS (78a7303aa046067b) -0.1
checking 'print' .............................. PASS (9aaf686697ac72be) -0.1
checking 'hist' ............................... PASS (b01a7d139c82f457) 492113.2
checking '>' .................................. PASS (1f65757da86f51b3) 2013322
checking '+' .................................. PASS (86bdea7870f6d0cc) 4709417
checking '/' .................................. PASS (c3533150260f42c4) 1177354
checking '*' .................................. PASS (86bdea7870f6d0cc) 4709417
checking 'median' ............................. PASS (06af3e4c86ccda6d) 0.3823529
checking 'quantile' ........................... PASS (11ef7960975f6975) 8.139216
checking 'Image' .............................. PASS (290d7a45d7468e5f) 2354709
checking 'as.Image' ........................... PASS (290d7a45d7468e5f) 2354709
checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
checking 'imageData' .......................... PASS (1936bbf08b457bab) 2354709
checking 'imageData<-' ........................ PASS (290d7a45d7468e5f) 2354709
checking 'as.raster' .......................... PASS (da1c028f359bf00b) -0.1
checking 'colorMode<-' ........................ PASS (7856ef3bde7528ce) 2354709
checking 'numberOfFrames' ..................... PASS (161e41d6aa749739) 1.9
checking 'getFrames' .......................... PASS (f0d9427233f46fbb) 1440422
checking 'display' ............................ PASS (bc877f5317c575b2) 239.3
checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
checking 'drawCircle' ......................... PASS (ad8f0dc0cad6885c) 2650006
checking '[' .................................. PASS (144b12c39a99e2bc) 40701.82
checking 'resize' ............................. PASS (dd96ecc9ed75e744) 76725662
checking 'rotate' ............................. PASS (19319de30582c1d6) 4140744
checking 'flip' ............................... PASS (91c7918c52fe8718) 2309692
checking 'flop' ............................... PASS (49ae0fb3bef587c5) 2358658
checking 'translate' .......................... PASS (a8fcd75113ffb2d2) 3393923
checking 'affine' ............................. PASS (592877c7d17e1d22) 301692.6
checking 'transpose' .......................... PASS (a42245132dbea662) 2303263
checking 'thresh' ............................. PASS (167470821b508c29) 1549362
checking 'channel' ............................ PASS (d4dd2cc593776db0) 287206.2
checking 'otsu' ............................... PASS (2ff953970aa01423) 1.370703
checking 'bwlabel' ............................ PASS (404699231a09f479) 360413.9
checking 'colorLabels' ........................ PASS (4742967f9e3ced6e) 3039066
checking 'stackObjects' ....................... PASS (71587dec63927412) 2472601
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'paintObjects' ....................... PASS (0daa597dbe10a6cd) 2558300
checking 'rmObjects' .......................... PASS (ea36bf2e51776461) 261782.9
checking 'reenumerate' ........................ PASS (ea36bf2e51776461) 261782.9
checking 'reenumerate' ........................ PASS (404699231a09f479) 360413.9
checking 'computeFeatures' .................... PASS (151a0d98d309d0b1) 749353.1
checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 19422.3
checking 'ocontour' ........................... PASS (20fad83d539e2372) 107408.8
checking 'localCurvature' ..................... PASS (469cd750daa03946) 106275.7
checking 'normalize' .......................... PASS (4484b1dbbf34c675) 2693244
checking 'normalize' .......................... PASS (27680837000f1ded) 2315924
checking 'gblur' .............................. PASS (fc2147343f5faed5) 2349701
checking 'filter2' ............................ PASS (958b84b9c0054384) 58841710
checking 'medianFilter' ....................... PASS (8ccc036255fe88d9) 2352447
checking 'equalize' ........................... PASS (e7f99b2a8483f2d3) 2616480
checking 'erode' .............................. PASS (16554ca32b165307) 1547948
checking 'dilate' ............................. PASS (560c069e5292fdc9) 2604996
checking 'opening' ............................ PASS (592d8ab4156490aa) 1919386
checking 'closing' ............................ PASS (c57a6175329f5e45) 2038196
checking 'whiteTopHat' ........................ PASS (6938d64e59a77fe1) 12437.36
checking 'blackTopHat' ........................ PASS (8fbaad8a000d91c5) 19780.97
checking 'selfComplementaryTopHat' ............ PASS (b11bd64d03fe29b9) 4711722
checking 'distmap' ............................ PASS (708df2d4560d23a7) 10836360
checking 'watershed' .......................... PASS (4aa1432f01914277) 2013322
checking 'floodFill' .......................... PASS (02926422d15cf3c2) 2355706
checking 'fillHull' ........................... PASS (1f65757da86f51b3) 2013322
checking 'propagate' .......................... PASS (1656991af484107e) 11618104
checking 'toRGB' .............................. PASS (290d7a45d7468e5f) 2354709
checking 'rgbImage' ........................... PASS (98de7e0def0bab8b) 12071186
checking 'colormap' ........................... PASS (0798dea20c907720) 2273276
checking 'combine' ............................ PASS (579971440faf3f11) 9516503
checking 'combine' ............................ PASS (fb7944257dfefb91) 59844403
checking 'tile' ............................... PASS (e594265685cdf3aa) 114300809
checking 'untile' ............................. PASS (5b25f3b7fc0df1b3) 105862114
checking 'abind' .............................. PASS (a413703585d2e713) 9516503
>
> ## test: 4D Grayscale 16x33x2x3
> colorMode(x) <- Grayscale
> imageData(x) <- aperm(x, c(2L, 1L, 4L, 3L))
> testEBImageFunctions(x)
new test (hash=2a321f78219fa026)
checking 'show' ............................... PASS (3de182583a8c2cf2) -0.1
checking 'print' .............................. PASS (05d1cebf84274f35) -0.1
checking 'hist' ............................... PASS (885aba01ae2954f5) 229030.4
checking '>' .................................. PASS (c15b137f0122c2ee) 1541186
checking '+' .................................. PASS (2951b29fcfadda51) 4466272
checking '/' .................................. PASS (b0a06579c4ef390d) 1116568
checking '*' .................................. PASS (2951b29fcfadda51) 4466272
checking 'median' ............................. PASS (06af3e4c86ccda6d) 0.3823529
checking 'quantile' ........................... PASS (11ef7960975f6975) 8.139216
checking 'Image' .............................. PASS (e6ae9fe3a69fec2c) 2233136
checking 'as.Image' ........................... PASS (2a321f78219fa026) 2233136
checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
checking 'imageData' .......................... PASS (6a221a6a2cec815a) 2233136
checking 'imageData<-' ........................ PASS (2a321f78219fa026) 2233136
checking 'as.raster' .......................... PASS (73a5fd711e0edd14) -0.1
checking 'colorMode<-' ........................ PASS (2a321f78219fa026) 2233136
checking 'numberOfFrames' ..................... PASS (d9914b6bdfe88a1d) 5.9
checking 'getFrames' .......................... PASS (c2a08dc890b333e2) 1229859
checking 'display' ............................ PASS (d28e3e75eed04056) 256.3
checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
checking 'drawCircle' ......................... PASS (d4dbcf7b516a28b0) 2502013
checking '[' .................................. PASS (efc391fc4ded377e) 41200.75
checking 'resize' ............................. PASS (5ab5e219e21b7d77) 72772706
checking 'rotate' ............................. PASS (5ea8cc41d39fe2c4) 3978266
checking 'flip' ............................... PASS (2578de2eb711ac89) 2296325
checking 'flop' ............................... PASS (c21acaf425029919) 2231772
checking 'translate' .......................... PASS (74e4014bf39793e1) 3827517
checking 'affine' ............................. PASS (76f6b18d2cb7c9c2) 219714.6
checking 'transpose' .......................... PASS (3b5dcc82ff30daf8) 2284582
checking 'thresh' ............................. PASS (3a92d48cd68a67e8) 1426674
checking 'channel' ............................ PASS (2a321f78219fa026) 2233136
checking 'otsu' ............................... PASS (2cdec937ebdb0543) 9.425391
checking 'bwlabel' ............................ PASS (f698416417dde49c) 2016822
checking 'colorLabels' ........................ PASS (b07a31035fc451d5) 15071536
checking 'stackObjects' ....................... PASS (8e5b00026f507a11) 2575847
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'paintObjects' ....................... PASS (63b2ef8ac8682f98) 2379341
checking 'rmObjects' .......................... PASS (056669f72385f506) 1934575
checking 'reenumerate' ........................ PASS (056669f72385f506) 1934575
checking 'reenumerate' ........................ PASS (f698416417dde49c) 2016822
checking 'computeFeatures' .................... PASS (53798e843cdbfa9f) 734993.9
checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 19422.3
checking 'ocontour' ........................... PASS (3a230e30e8d15bee) 118072.8
checking 'localCurvature' ..................... PASS (a1d19191deda947d) 117246.2
checking 'normalize' .......................... PASS (85d2a91256ddfdaa) 2526618
checking 'normalize' .......................... PASS (4accf817a36301dc) 2163958
checking 'gblur' .............................. PASS (c2c22f114f9ac87d) 2237219
checking 'filter2' ............................ PASS (0245e31021e7583c) 56904871
checking 'medianFilter' ....................... PASS (24f248c2c56e7772) 2231438
checking 'equalize' ........................... PASS (97693dcd997265d1) 2447139
checking 'erode' .............................. PASS (5b04187576514eec) 1121204
checking 'dilate' ............................. PASS (4897aaa0d40c4fb8) 2104588
checking 'opening' ............................ PASS (cb86eac9754dbac1) 1451050
checking 'closing' ............................ PASS (13b4d846ef6a77dd) 1569448
checking 'whiteTopHat' ........................ PASS (1c856cc6a52ed865) 12004.54
checking 'blackTopHat' ........................ PASS (f74244f5c4295d35) 20296.87
checking 'selfComplementaryTopHat' ............ PASS (f23286411d6929f7) 4469404
checking 'distmap' ............................ PASS (ff3b2754a2aa8eb3) 7464344
checking 'watershed' .......................... PASS (cd9ef36f457c5d89) 1541186
checking 'floodFill' .......................... PASS (60d288f662756f97) 2234521
checking 'fillHull' ........................... PASS (c15b137f0122c2ee) 1541186
checking 'propagate' .......................... PASS (503cd7ed6238770e) 8948876
checking 'toRGB' .............................. PASS (5a32f2aceec9a146) 20279146
checking 'rgbImage' ........................... PASS (19e0ea95d787d11c) 10796552
checking 'colormap' ........................... PASS (62fb056f168823de) 22585273
checking 'combine' ............................ PASS (67fe5c370ca3a18d) 8992851
checking 'combine' ............................ PASS (41f451bdd6a63a8f) 56431472
checking 'tile' ............................... PASS (0581a6216e8e50e0) 72664167
checking 'untile' ............................. PASS (4e208afef7f298bd) 60048605
checking 'abind' .............................. PASS (e3feb875241cebc2) 9273358
>
> ## test: Image subclass
> ImageSubclass <- setClass ("ImageSubclass", contains = "Image", slots = c(foo = "character"))
> x <- ImageSubclass(x, foo="bar")
> testEBImageFunctions(x)
new test (hash=9b67f57c77f74d34)
checking 'show' ............................... PASS (63597c3473b56977) -0.1
checking 'print' .............................. PASS (1cd88fa9e1ff084e) -0.1
checking 'hist' ............................... PASS (885aba01ae2954f5) 229030.4
checking '>' .................................. PASS (8213f4f8b30b3c46) 1541186
checking '+' .................................. PASS (d9da0200176ead52) 4466272
checking '/' .................................. PASS (c5360d5612508ba0) 1116568
checking '*' .................................. PASS (d9da0200176ead52) 4466272
checking 'median' ............................. PASS (06af3e4c86ccda6d) 0.3823529
checking 'quantile' ........................... PASS (11ef7960975f6975) 8.139216
checking 'Image' .............................. PASS (e6ae9fe3a69fec2c) 2233136
checking 'as.Image' ........................... PASS (2a321f78219fa026) 2233136
checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
checking 'imageData' .......................... PASS (6a221a6a2cec815a) 2233136
checking 'imageData<-' ........................ PASS (9b67f57c77f74d34) 2233136
checking 'as.raster' .......................... PASS (73a5fd711e0edd14) -0.1
checking 'colorMode<-' ........................ PASS (9b67f57c77f74d34) 2233136
checking 'numberOfFrames' ..................... PASS (d9914b6bdfe88a1d) 5.9
checking 'getFrames' .......................... PASS (e9438bf3afe19fef) 1229859
checking 'display' ............................ PASS (d28e3e75eed04056) 256.3
checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
checking 'drawCircle' ......................... PASS (88969323fe4011cb) 2502013
checking '[' .................................. PASS (856f5f5a7828a96f) 41200.75
checking 'resize' ............................. PASS (22d4ff5205c02f14) 72772706
checking 'rotate' ............................. PASS (3e6dee126668bb5a) 3978266
checking 'flip' ............................... PASS (753308a7b510662f) 2296325
checking 'flop' ............................... PASS (1ea0c6126c86d976) 2231772
checking 'translate' .......................... PASS (c3111aabac6df5c8) 3827517
checking 'affine' ............................. PASS (559df6f741145f7f) 219714.6
checking 'transpose' .......................... PASS (d9282e9071f27e10) 2284582
checking 'thresh' ............................. PASS (b51eea6755dfd65a) 1426674
checking 'channel' ............................ PASS (9b67f57c77f74d34) 2233136
checking 'otsu' ............................... PASS (2cdec937ebdb0543) 9.425391
checking 'bwlabel' ............................ PASS (edce7604823b90a7) 2016822
checking 'colorLabels' ........................ PASS (05cf97699b52f053) 15969784
checking 'stackObjects' ....................... PASS (bbe84601c71da500) 2575847
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'paintObjects' ....................... PASS (944b58c80d127777) 2379341
checking 'rmObjects' .......................... PASS (1ed59ae8eb61aef6) 1934575
checking 'reenumerate' ........................ PASS (1ed59ae8eb61aef6) 1934575
checking 'reenumerate' ........................ PASS (edce7604823b90a7) 2016822
checking 'computeFeatures' .................... PASS (53798e843cdbfa9f) 734993.9
checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 19422.3
checking 'ocontour' ........................... PASS (3a230e30e8d15bee) 118072.8
checking 'localCurvature' ..................... PASS (a1d19191deda947d) 117246.2
checking 'normalize' .......................... PASS (9ace81a69fc88c37) 2526618
checking 'normalize' .......................... PASS (2a78b599de5c2ae9) 2163958
checking 'gblur' .............................. PASS (0d226d91f7036796) 2237219
checking 'filter2' ............................ PASS (7cb701d185d8631b) 56904871
checking 'medianFilter' ....................... PASS (37328d9ce26ed388) 2231438
checking 'equalize' ........................... PASS (05fc2423af12b77a) 2447139
checking 'erode' .............................. PASS (17fcd8b3a8de8535) 1121204
checking 'dilate' ............................. PASS (715c930769bb9119) 2104588
checking 'opening' ............................ PASS (1ef38f55606cdbf4) 1451050
checking 'closing' ............................ PASS (66cb111962e57366) 1569448
checking 'whiteTopHat' ........................ PASS (66e080c20ad98021) 12004.54
checking 'blackTopHat' ........................ PASS (c8b5fb6a0e1d3959) 20296.87
checking 'selfComplementaryTopHat' ............ PASS (d91b85d0f726e766) 4469404
checking 'distmap' ............................ PASS (4ced93e5efc06917) 7464344
checking 'watershed' .......................... PASS (9c1a4d5672652853) 1541186
checking 'floodFill' .......................... PASS (d9a38a5952fe360e) 2234521
checking 'fillHull' ........................... PASS (8213f4f8b30b3c46) 1541186
checking 'propagate' .......................... PASS (0731a1de5ddabcc4) 8948876
checking 'toRGB' .............................. PASS (c62b6c6a269ea1eb) 20279146
checking 'rgbImage' ........................... PASS (27eec26383a0bc15) 10796552
checking 'colormap' ........................... PASS (eef6d0395d7fe0e7) 22585273
checking 'combine' ............................ PASS (5b4994ce3c695b2e) 8992851
checking 'combine' ............................ PASS (03e050af1c7e1af2) 56431472
checking 'tile' ............................... PASS (db685d6eb3480813) 72664167
checking 'untile' ............................. PASS (0e362c45443a3ec0) 60048605
checking 'abind' .............................. PASS (add8d4baab35a5f9) 9273358
>
EBImage.Rcheck/EBImage-Ex.timings
| name | user | system | elapsed | |
| EBImage | 2.80 | 0.69 | 6.36 | |
| Image | 0.33 | 0.09 | 0.42 | |
| abind | 0.89 | 0.20 | 1.10 | |
| bwlabel | 2.01 | 0.33 | 2.34 | |
| channel | 0.44 | 0.20 | 0.64 | |
| clahe | 0.14 | 0.05 | 0.19 | |
| colorLabels | 0.16 | 0.05 | 0.20 | |
| colormap | 0.20 | 0.15 | 0.36 | |
| combine | 0.55 | 0.28 | 0.83 | |
| computeFeatures | 0.32 | 0.29 | 0.61 | |
| display-shiny | 0 | 0 | 0 | |
| display | 0.75 | 0.42 | 1.17 | |
| distmap | 0.16 | 0.00 | 0.16 | |
| drawCircle | 0.03 | 0.00 | 0.03 | |
| equalize | 0.81 | 0.39 | 1.20 | |
| fillHull | 0.18 | 0.03 | 0.21 | |
| filter2 | 1.68 | 1.03 | 2.71 | |
| floodFill | 0.36 | 0.11 | 0.47 | |
| gblur | 0.30 | 0.08 | 0.38 | |
| io | 0.33 | 0.14 | 3.11 | |
| localCurvature | 0.42 | 0.48 | 0.90 | |
| medianFilter | 0.66 | 0.28 | 0.94 | |
| morphology | 0.07 | 0.00 | 0.08 | |
| normalize | 0.00 | 0.02 | 0.02 | |
| ocontour | 0.02 | 0.00 | 0.01 | |
| otsu | 0.12 | 0.06 | 0.19 | |
| paintObjects | 0.97 | 0.33 | 1.30 | |
| propagate | 0.82 | 0.05 | 0.85 | |
| rmObjects | 0.06 | 0.00 | 0.07 | |
| spatial | 0.50 | 0.04 | 0.54 | |
| stackObjects | 1.87 | 1.27 | 3.14 | |
| thresh | 0.08 | 0.03 | 0.11 | |
| tile | 0.25 | 0.08 | 0.33 | |
| transpose | 0.14 | 0.00 | 0.14 | |
| watershed | 0.05 | 0.02 | 0.07 | |