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### Running command:
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###   chmod a+r DMRcate -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DMRcate
###
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* checking for file 'DMRcate/DESCRIPTION' ... OK
* preparing 'DMRcate':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'DMRcate.Rnw' using knitr
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)

Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: AnnotationHub
Loading required package: BiocFileCache
Loading required package: dbplyr
snapshotDate(): 2022-03-16
see ?FlowSorted.Blood.EPIC and browseVignettes('FlowSorted.Blood.EPIC') for documentation
loading from cache
snapshotDate(): 2022-03-16
see ?DMRcatedata and browseVignettes('DMRcatedata') for documentation
loading from cache
see ?DMRcatedata and browseVignettes('DMRcatedata') for documentation
loading from cache
Your contrast returned 31793 individually significant probes. We recommend the default setting of pcutoff in dmrcate().
snapshotDate(): 2022-03-16
see ?DMRcatedata and browseVignettes('DMRcatedata') for documentation
loading from cache
snapshotDate(): 2022-03-16
see ?DMRcatedata and browseVignettes('DMRcatedata') for documentation
loading from cache
require("Gviz")
Quitting from lines 125-131 (DMRcate.Rnw) 
Error: processing vignette 'DMRcate.Rnw' failed with diagnostics:
No method for subsetting an XMLInternalDocument with numeric
--- failed re-building 'DMRcate.Rnw'

SUMMARY: processing the following file failed:
  'DMRcate.Rnw'

Error: Vignette re-building failed.
Execution halted