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### Running command:
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###   chmod a+r ppiStats -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ppiStats
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* checking for file 'ppiStats/DESCRIPTION' ... OK
* preparing 'ppiStats':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'ppiStats.Rnw' using Sweave
Loading required package: graph
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "ppiStats.tex" --max-iterations=20 -I "C:/Users/biocbuild/bbs-3.14-bioc/R/share/texmf/tex/latex" -I "C:/Users/biocbuild/bbs-3.14-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'ppiStats.Rnw' failed with diagnostics:
running 'texi2dvi' on 'ppiStats.tex' failed

LaTeX errors:
vignettes/ppiStats.tex:206: Package pdftex.def Error: File `C:-3.14-bioc7Xh/scp
-Gavin02-ident.pdf' not found: using draft setting.

See the pdftex.def package documentation for explanation.
Type  H <return>  for immediate help.
vignettes/ppiStats.tex:209: Package pdftex.def Error: File `C:-3.14-bioc7Xh/scp
-Gavin02-sqrt.pdf' not found: using draft setting.

See the pdftex.def package documentation for explanation.
Type  H <return>  for immediate help.
vignettes/ppiStats.tex:212: Package pdftex.def Error: File `C:-3.14-bioc7Xh/scp
-Gavin02-hist.pdf' not found: using draft setting.

See the pdftex.def package documentation for explanation.
Type  H <return>  for immediate help.
vignettes/ppiStats.tex:231: Package pdftex.def Error: File `C:-3.14-bioc7Xh/scp
-Gavin06-ident.pdf' not found: using draft setting.

See the pdftex.def package documentation for explanation.
Type  H <return>  for immediate help.
vignettes/ppiStats.tex:234: Package pdftex.def Error: File `C:-3.14-bioc7Xh/scp
-Gavin06-sqrt.pdf' not found: using draft setting.

See the pdftex.def package documentation for explanation.
Type  H <return>  for immediate help.
vignettes/ppiStats.tex:237: Package pdftex.def Error: File `C:-3.14-bioc7Xh/scp
-Gavin06-hist.pdf' not found: using draft setting.

See the pdftex.def package documentation for explanation.
Type  H <return>  for immediate help.

--- failed re-building 'ppiStats.Rnw'

SUMMARY: processing the following file failed:
  'ppiStats.Rnw'

Error: Vignette re-building failed.
Execution halted