############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ontoProc_1.16.0.tar.gz && rm -rf ontoProc.buildbin-libdir && mkdir ontoProc.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ontoProc.buildbin-libdir ontoProc_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ontoProc_1.16.0.zip && rm ontoProc_1.16.0.tar.gz ontoProc_1.16.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 12 8330k 12 1000k 0 0 1215k 0 0:00:06 --:--:-- 0:00:06 1215k 29 8330k 29 2459k 0 0 1347k 0 0:00:06 0:00:01 0:00:05 1347k 53 8330k 53 4445k 0 0 1575k 0 0:00:05 0:00:02 0:00:03 1575k 83 8330k 83 6988k 0 0 1816k 0 0:00:04 0:00:03 0:00:01 1817k 100 8330k 100 8330k 0 0 1842k 0 0:00:04 0:00:04 --:--:-- 1842k install for i386 Warning in untar2(tarfile, files, list, exdir, restore_times) : failed to copy 'ontoProc/vignettes/ontoProc.Rmd' to 'ontoProc/README.md' * installing *source* package 'ontoProc' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ontoProc' finding HTML links ... done CLfeats html PROSYM html TermSet-class html allGOterms html bind_formal_tags html c-TermSet-method html cellTypeToGO html cleanCLOnames html common_classes html connect_classes html ctmarks html cyclicSigset html demoApp html dropStop html fastGrep html findCommonAncestors html finding level-2 HTML links ... done getCellOnto html getLeavesFromTerm html humrna html improveNodes html ldfToTerms html liberalMap html makeSelectInput html make_graphNEL_from_ontology_plot html map2prose html mapOneNaive html minicorpus html nomenCheckup html onto_plot2 html onto_roots html packDesc2019 html recognizedPredicates html secLevGen html selectFromMap html seur3kTab html siblings_TAG html stopWords html subset_descendants html sym2CellOnto html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 Warning in untar2(tarfile, files, list, exdir, restore_times) : failed to copy 'ontoProc/vignettes/ontoProc.Rmd' to 'ontoProc/README.md' * installing *source* package 'ontoProc' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ontoProc' as ontoProc_1.16.0.zip * DONE (ontoProc) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'ontoProc' successfully unpacked and MD5 sums checked