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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:easier.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings easier_1.0.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/easier.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘easier/DESCRIPTION’ ... OK
* this is package ‘easier’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘easier’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘coin’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                  user system elapsed
compute_cell_fractions         152.101  0.598 153.643
assess_immune_response          50.813  2.870  58.289
explore_biomarkers              46.658  0.735  54.712
retrieve_easier_score           36.684  3.148  42.428
compute_CCpair_score            32.046  1.030  35.942
predict_immune_response         32.177  0.664  43.210
compute_CC_pairs                30.706  0.865  34.576
compute_pathway_activity        20.548  0.404  22.260
compute_LR_pairs                19.575  0.520  21.815
compute_TF_activity             16.841  0.391  18.802
compute_scores_immune_response  11.427  0.249  12.915
categorize_TMB                   6.091  0.181   7.062
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.14-bioc/meat/easier.Rcheck/00check.log’
for details.