############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/chimeraviz_1.20.0.tar.gz && rm -rf chimeraviz.buildbin-libdir && mkdir chimeraviz.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chimeraviz.buildbin-libdir chimeraviz_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL chimeraviz_1.20.0.zip && rm chimeraviz_1.20.0.tar.gz chimeraviz_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 46 2627k 46 1233k 0 0 1505k 0 0:00:01 --:--:-- 0:00:01 1506k 100 2627k 100 2627k 0 0 1767k 0 0:00:01 0:00:01 --:--:-- 1768k install for i386 * installing *source* package 'chimeraviz' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'chimeraviz' finding HTML links ... done Fusion-class html PartnerGene-class html add_fusion_reads_alignment html chimeraviz-internals-fusions_to_gene_label_data html chimeraviz-internals-fusions_to_link_data html chimeraviz-internals-scaleListToInterval html chimeraviz html create_fusion_report html decide_transcript_category html down_shift html downstream_partner_gene html fetch_reads_from_fastq html fusion_spanning_reads_count html fusion_split_reads_count html fusion_to_data_frame html get_ensembl_ids html get_fusion_by_chromosome html get_fusion_by_gene_name html get_fusion_by_id html get_transcripts_ensembl_db html import_aeron html import_chimpipe html import_defuse html import_ericscript html import_function_non_ucsc html import_fusioncatcher html import_fusionmap html import_infusion html import_jaffa html import_oncofuse html import_prada html import_soapfuse html import_squid html import_starfusion html partner_gene_ensembl_id html partner_gene_junction_sequence html plot_circle html plot_fusion html plot_fusion_reads html plot_fusion_transcript html plot_fusion_transcript_with_protein_domain html plot_fusion_transcripts_graph html plot_transcripts html raw_Homo_sapiens.GRCh37.74 html raw_chimpipe html raw_cytobandhg19 html raw_cytobandhg38 html raw_defuse html raw_ericscript html raw_fusion5267proteindomains html raw_fusion5267reads html raw_fusion5267readsBedGraph html raw_fusioncatcher html raw_fusionmap html raw_infusion html raw_jaffa html raw_oncofuse html raw_prada html raw_soapfuse html raw_starfusion html select_transcript html show-Fusion-method html show-PartnerGene-method html split_on_utr_and_add_feature html upstream_partner_gene html write_fusion_reference html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'chimeraviz' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'chimeraviz' as chimeraviz_1.20.0.zip * DONE (chimeraviz) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'chimeraviz' successfully unpacked and MD5 sums checked