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### Running command:
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###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RCSL.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings RCSL_1.2.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/RCSL.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RCSL/DESCRIPTION' ... OK
* this is package 'RCSL' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RCSL' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'RcppAnnoy'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
PlotMST: no visible binding for global variable 'X1'
PlotMST: no visible binding for global variable 'X2'
PlotMST: no visible binding for global variable 'label'
PlotMST: no visible binding for global variable 'from.x'
PlotMST: no visible binding for global variable 'to.x'
PlotMST: no visible binding for global variable 'from.y'
PlotMST: no visible binding for global variable 'to.y'
PlotMST: no visible binding for global variable 'V1'
PlotMST: no visible binding for global variable 'V2'
PlotPseudoTime: no visible binding for global variable 'x'
PlotPseudoTime: no visible binding for global variable 'y'
PlotPseudoTime: no visible binding for global variable 'Timepoint'
PlotTrajectory: no visible binding for global variable 'X1'
PlotTrajectory: no visible binding for global variable 'X2'
PlotTrajectory: no visible binding for global variable 'label'
PlotTrajectory: no visible binding for global variable 'x'
PlotTrajectory: no visible binding for global variable 'y'
Undefined global functions or variables:
  Timepoint V1 V2 X1 X2 from.x from.y label to.x to.y x y
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
BDSM               54.38   0.14   54.52
PlotTrajectory     42.02   0.19   42.20
TrajectoryAnalysis 41.00   0.20   41.20
EstClusters        40.46   0.14   40.65
SimS               39.35   0.14   39.84
PlotPseudoTime     37.26   0.15   37.44
PlotMST            36.72   0.07   36.78
GenesFilter        35.80   0.21   36.00
NeigRepresent      35.84   0.04   35.89
getLineage         35.39   0.03   35.43
RCSL               11.06   0.24   11.35
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
TrajectoryAnalysis 47.00   0.08   47.61
PlotMST            45.53   0.12   45.66
EstClusters        42.71   0.05   42.77
BDSM               41.50   0.16   42.08
getLineage         40.64   0.01   40.66
PlotTrajectory     39.92   0.08   40.00
PlotPseudoTime     39.73   0.09   39.88
NeigRepresent      39.52   0.08   39.59
GenesFilter        38.44   0.25   38.69
SimS               36.95   0.11   37.06
RCSL               11.91   0.22   12.12
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/RCSL.Rcheck/00check.log'
for details.