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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MesKit_1.4.0.tar.gz && rm -rf MesKit.buildbin-libdir && mkdir MesKit.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MesKit.buildbin-libdir MesKit_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MesKit_1.4.0.zip && rm MesKit_1.4.0.tar.gz MesKit_1.4.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 51 1801k   51  925k    0     0  1170k      0  0:00:01 --:--:--  0:00:01 1171k
100 1801k  100 1801k    0     0  1451k      0  0:00:01  0:00:01 --:--:-- 1452k

install for i386

* installing *source* package 'MesKit' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'ape::degree' by 'circlize::degree' when loading 'MesKit'
** help
*** installing help indices
  converting help for package 'MesKit'
    finding HTML links ... done
    Maf-class                               html  
    MafList-class                           html  
    calFst                                  html  
    calJSI                                  html  
    calNeiDist                              html  
    ccfAUC                                  html  
    classifyMut                             html  
    cna2gene                                html  
    compareCCF                              html  
    compareTree                             html  
    fitSignatures                           html  
    getBinaryMatrix                         html  
    getBootstrapValue                       html  
    getBranchType                           html  
    getCCFMatrix                            html  
    getMafData                              html  
    getMafPatient                           html  
    getMafRef                               html  
    getMutBranches                          html  
    getNonSyn_vc                            html  
    getPhyloTree                            html  
    getPhyloTreePatient                     html  
    getPhyloTreeRef                         html  
    getPhyloTreeTsbLabel                    html  
    getSampleInfo                           html  
    getTree                                 html  
    getTreeMethod                           html  
    mathScore                               html  
    mutCluster                              html  
    mutHeatmap                              html  
    mutTrunkBranch                          html  
    phyloTree-class                         html  
    phyloTreeList-class                     html  
    plotCNA                                 html  
    plotMutProfile                          html  
    plotMutSigProfile                       html  
    plotPhyloTree                           html  
    readMaf                                 html  
    readSegment                             html  
    runMesKit                               html  
    subMaf                                  html  
    testNeutral                             html  
    triMatrix                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'ape::degree' by 'circlize::degree' when loading 'MesKit'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'ape::degree' by 'circlize::degree' when loading 'MesKit'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MesKit' ...
** testing if installed package can be loaded
Warning: replacing previous import 'ape::degree' by 'circlize::degree' when loading 'MesKit'
* MD5 sums
packaged installation of 'MesKit' as MesKit_1.4.0.zip
* DONE (MesKit)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'MesKit' successfully unpacked and MD5 sums checked