##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/stageR_1.14.0.tar.gz && rm -rf stageR.buildbin-libdir && mkdir stageR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=stageR.buildbin-libdir stageR_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL stageR_1.14.0.zip && rm stageR_1.14.0.tar.gz stageR_1.14.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  911k  100  911k    0     0  1331k      0 --:--:-- --:--:-- --:--:-- 1334k

install for i386

* installing *source* package 'stageR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'stageR'
    finding HTML links ... done
    adjustedAlphaLevel                      html  
    esetProstate                            html  
    getAdjustedPValues                      html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmp2nWk6n/R.INSTALL144c11454ce3/stageR/man/getAdjustedPValues.Rd:34: missing link 'stageWiseAdjustment,stageR,character,numeric-method'
    getAlpha                                html  
    getMethod                               html  
    getPConfirmation                        html  
    getPScreen                              html  
    getResults                              html  
    getSignificantGenes                     html  
    getSignificantTx                        html  
    getTx2gene                              html  
    hammer.eset                             html  
    isAdjusted                              html  
    isPScreenAdjusted                       html  
    stageR                                  html  
    stageRClass                             html  
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmp2nWk6n/R.INSTALL144c11454ce3/stageR/man/stageRClass.Rd:19: missing link 'getAdjustedPValues,stageR,logical,logical-method'
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmp2nWk6n/R.INSTALL144c11454ce3/stageR/man/stageRClass.Rd:19: missing link 'getResults,stageR-method'
    stageRTx                                html  
    stageWiseAdjustment                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'stageR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'stageR' as stageR_1.14.0.zip
* DONE (stageR)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'stageR' successfully unpacked and MD5 sums checked