############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/sangeranalyseR_1.2.0.tar.gz && rm -rf sangeranalyseR.buildbin-libdir && mkdir sangeranalyseR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sangeranalyseR.buildbin-libdir sangeranalyseR_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL sangeranalyseR_1.2.0.zip && rm sangeranalyseR_1.2.0.tar.gz sangeranalyseR_1.2.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 5 35.5M 5 1873k 0 0 2210k 0 0:00:16 --:--:-- 0:00:16 2209k 14 35.5M 14 5451k 0 0 2950k 0 0:00:12 0:00:01 0:00:11 2949k 17 35.5M 17 6546k 0 0 2298k 0 0:00:15 0:00:02 0:00:13 2298k 29 35.5M 29 10.5M 0 0 2796k 0 0:00:13 0:00:03 0:00:10 2796k 45 35.5M 45 16.1M 0 0 3403k 0 0:00:10 0:00:04 0:00:06 3403k 61 35.5M 61 21.7M 0 0 3792k 0 0:00:09 0:00:05 0:00:04 4060k 79 35.5M 79 28.4M 0 0 4234k 0 0:00:08 0:00:06 0:00:02 4706k 100 35.5M 100 35.5M 0 0 4663k 0 0:00:07 0:00:07 --:--:-- 6019k install for i386 * installing *source* package 'sangeranalyseR' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Note: wrong number of arguments to '==' ** help *** installing help indices converting help for package 'sangeranalyseR' finding HTML links ... done ChromatogramParam-class html MakeBaseCalls-methods html QualityReport-class-qualityBasePlot html QualityReport-class-updateQualityParam html QualityReport-class html SangerAlignment-class-generateReportSA html SangerAlignment-class-launchAppSA html SangerAlignment-class-updateQualityParam html SangerAlignment-class-writeFastaSA html SangerAlignment-class html SangerAlignment html SangerContig-class-generateReportSC html SangerContig-class-launchAppSC html SangerContig-class-updateQualityParam html SangerContig-class-writeFastaSC html SangerContig-class html SangerContig html SangerRead-class-MakeBaseCalls html SangerRead-class-generateReportSR html SangerRead-class-qualityBasePlot html SangerRead-class-readTable html SangerRead-class-updateQualityParam html SangerRead-class-writeFastaSR html SangerRead-class html SangerRead html generateReport html generateReportSA-methods html generateReportSC-methods html generateReportSR-methods html launchApp html launchAppSA-methods html launchAppSC-methods html qualityBasePlot-methods html qualityReportData html readTable-methods html sangerAlignmentData html sangerContigData html sangerReadFData html sangeranalyseR html updateQualityParam-methods html writeFasta html writeFastaSA-methods html writeFastaSC-methods html writeFastaSR-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'sangeranalyseR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'sangeranalyseR' as sangeranalyseR_1.2.0.zip * DONE (sangeranalyseR) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'sangeranalyseR' successfully unpacked and MD5 sums checked