############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ndexr_1.14.1.tar.gz && rm -rf ndexr.buildbin-libdir && mkdir ndexr.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ndexr.buildbin-libdir ndexr_1.14.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ndexr_1.14.1.zip && rm ndexr_1.14.1.tar.gz ndexr_1.14.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 12 370k 12 45689 0 0 292k 0 0:00:01 --:--:-- 0:00:01 293k 100 370k 100 370k 0 0 826k 0 --:--:-- --:--:-- --:--:-- 826k install for i386 * installing *source* package 'ndexr' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ndexr' finding HTML links ... done listToRCode html ndex_conf_header html ndex_config html ndex_connect html ndex_create_group html ndex_create_network html ndex_create_user html ndex_delete_group html ndex_delete_network html ndex_delete_user html ndex_find_groups html ndex_find_networks html ndex_find_user_byId html ndex_find_user_byName html ndex_find_users html ndex_get_group html ndex_get_network html ndex_group_delete_membership html ndex_group_list_networks html ndex_group_list_users html ndex_group_network_get_permission html ndex_group_set_membership html ndex_helper_encodeParams html ndex_helper_getApi html ndex_helper_httpResponseHandler html ndex_internal_addAspects html ndex_network_aspect_get_metadata html ndex_network_delete_permission html ndex_network_get_aspect html ndex_network_get_metadata html ndex_network_get_permission html ndex_network_get_provenance html ndex_network_get_summary html ndex_network_set_systemProperties html ndex_network_update_aspect html ndex_network_update_permission html ndex_network_update_profile html ndex_rest_DELETE html ndex_rest_GET html ndex_rest_POST html ndex_rest_PUT html ndex_update_group html ndex_update_network html ndex_update_user html ndex_user_change_password html ndex_user_forgot_password html ndex_user_get_networksummary html ndex_user_get_showcase html ndex_user_list_groups html ndex_user_list_permissions html ndex_user_mail_password html ndex_user_show_group html ndex_user_show_permission html ndex_verify_user html ndexr-package html ngraph_toRCX html print.NDExConnection html print.RCX html rcx_asNewNetwork html rcx_aspect_toJSON html rcx_fromJSON html rcx_new html rcx_toJSON html rcx_toNGraph html rcx_toRCXgraph html rcx_updateMetaData html rcxgraph_toRCX html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ndexr' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ndexr' as ndexr_1.14.1.zip * DONE (ndexr) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'ndexr' successfully unpacked and MD5 sums checked