############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/myvariant_1.22.0.tar.gz && rm -rf myvariant.buildbin-libdir && mkdir myvariant.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=myvariant.buildbin-libdir myvariant_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL myvariant_1.22.0.zip && rm myvariant_1.22.0.tar.gz myvariant_1.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 17381 100 17381 0 0 135k 0 --:--:-- --:--:-- --:--:-- 135k install for i386 * installing *source* package 'myvariant' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'myvariant' finding HTML links ... done MyVariant-class html MyVariant html formatHgvs html finding level-2 HTML links ... done formatSingleHgvs html getVariant html getVariants html metadata html myvariant-package html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/myvariant.buildbin-libdir/00LOCK-myvariant/00new/myvariant/help/myvariant.html queryVariant html queryVariants html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'myvariant' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'myvariant' as myvariant_1.22.0.zip * DONE (myvariant) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'myvariant' successfully unpacked and MD5 sums checked