############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL fmrs ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘fmrs’ ... ** using staged installation ** libs gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c fmrs.c -o fmrs.o fmrs.c: In function ‘minimum’: fmrs.c:138:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 138 | for(i = 0; i < ncov1; i++) | ^~~ fmrs.c:142:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 142 | return(min1); | ^~~~~~ fmrs.c: In function ‘maximum’: fmrs.c:152:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 152 | for(i = 0; i < ncov1; i++) | ^~~ fmrs.c:156:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 156 | return(max1); | ^~~~~~ fmrs.c: In function ‘FMR_Norm_Surv_EM_MLE’: fmrs.c:457:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 457 | for(j = 0; j < (ONCOV[k1] + 1); j++) | ^~~ fmrs.c:463:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 463 | for (i = 0; i < (ONCOV[k1] + 1); i++) { | ^~~ fmrs.c:285:12: warning: variable ‘multX’ set but not used [-Wunused-but-set-variable] 285 | double multX[nsize][NCOV][NCOMP]; | ^~~~~ fmrs.c: In function ‘FMR_Norm_Surv_EM_VarSel’: fmrs.c:883:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 883 | for(j = 0; j < NCOV; j++) | ^~~ fmrs.c:887:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 887 | for(i = 0; i < ONCOV[k1]; i++){ | ^~~ fmrs.c:915:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 915 | for(j = 0; j < (ONCOV[k1] + 1); j++) | ^~~ fmrs.c:921:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 921 | for (i = 0; i < (ONCOV[k1] + 1); i++) { | ^~~ fmrs.c:687:12: warning: variable ‘multX’ set but not used [-Wunused-but-set-variable] 687 | double multX[nsize][NCOV][NCOMP]; | ^~~~~ fmrs.c: In function ‘FMR_Norm_Surv_CwTuneParSel’: fmrs.c:1403:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1403 | for(j = 0; j < (ONCOV[k1] + 1); j++) | ^~~ fmrs.c:1409:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1409 | for (i = 0; i < (ONCOV[k1] + 1); i++) { | ^~~ fmrs.c:1218:12: warning: variable ‘new_pi0’ set but not used [-Wunused-but-set-variable] 1218 | double new_pi0[NCOMP]; | ^~~~~~~ fmrs.c:1211:12: warning: variable ‘new_sigma0’ set but not used [-Wunused-but-set-variable] 1211 | double new_sigma0[NCOMP]; | ^~~~~~~~~~ fmrs.c:1196:12: warning: variable ‘multX’ set but not used [-Wunused-but-set-variable] 1196 | double multX[nsize][NCOV][NCOMP]; | ^~~~~ fmrs.c: In function ‘FMR_Weibl_Surv_EM_MLE’: fmrs.c:1752:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1752 | for(j = 0; j < (ONCOV[k1] + 1); j++) | ^~~ fmrs.c:1758:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1758 | for (i = 0; i < (ONCOV[k1] + 1); i++) { | ^~~ fmrs.c:1547:12: warning: variable ‘multX’ set but not used [-Wunused-but-set-variable] 1547 | double multX[nsize][NCOV][NCOMP]; | ^~~~~ fmrs.c: In function ‘FMR_Weibl_Surv_EM_VarSel’: fmrs.c:2205:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2205 | for(j = 0; j < (NCOV + 1); j++) | ^~~ fmrs.c:2212:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2212 | for(i = 0; i < (NCOV + 1); i++){ | ^~~ fmrs.c:2251:15: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2251 | for(j = 0; j < (NCOV + 2); j++) | ^~~ fmrs.c:2257:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2257 | for (i = 0; i < (NCOV + 2); i++) { | ^~~ fmrs.c:2271:19: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2271 | for(j = 0; j < (NCOV + 1); j++) | ^~~ fmrs.c:2277:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2277 | sumi5[k1] = 0.0; | ^~~~~ fmrs.c: In function ‘FMR_Weibl_Surv_CwTuneParSel’: fmrs.c:2745:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2745 | for(j = 0; j < NCOV; j++) | ^~~ fmrs.c:2750:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2750 | for(i = 0; i < ONCOV[k1]; i++){ | ^~~ fmrs.c:2553:12: warning: variable ‘multX’ set but not used [-Wunused-but-set-variable] 2553 | double multX[nsize][NCOV][k1]; | ^~~~~ fmrs.c: In function ‘FMR_Norm_Surv_EM_VarSel’: fmrs.c:748:12: warning: ‘sat_den’ may be used uninitialized in this function [-Wmaybe-uninitialized] 748 | double sat_den; | ^~~~~~~ fmrs.c: In function ‘FMR_Weibl_Surv_EM_VarSel’: fmrs.c:2072:12: warning: ‘sat_den’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2072 | double sat_den; | ^~~~~~~ gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c fmrs_init.c -o fmrs_init.o gcc -shared -L/home/biocbuild/bbs-3.13-bioc/R/lib -L/usr/local/lib -o fmrs.so fmrs.o fmrs_init.o -L/home/biocbuild/bbs-3.13-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-fmrs/00new/fmrs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fmrs)