############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/biomvRCNS_1.32.0.tar.gz && rm -rf biomvRCNS.buildbin-libdir && mkdir biomvRCNS.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biomvRCNS.buildbin-libdir biomvRCNS_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL biomvRCNS_1.32.0.zip && rm biomvRCNS_1.32.0.tar.gz biomvRCNS_1.32.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 115k 100 115k 0 0 598k 0 --:--:-- --:--:-- --:--:-- 603k install for i386 * installing *source* package 'biomvRCNS' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c biomvRCNS.c -o biomvRCNS.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o biomvRCNS.dll tmp.def biomvRCNS.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/biomvRCNS.buildbin-libdir/00LOCK-biomvRCNS/00new/biomvRCNS/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'biomvRCNS' finding HTML links ... done biomvRCNS-class html biomvRGviz html biomvRhsmm html biomvRmgmr html biomvRseg html coriell html encodeTP53 html hsmmRun html maxGapminRun html regionSegAlphaNB html regionSegCost html simSegData html sojournAnno html splitFarNeighbour html variosm html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'biomvRCNS' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c biomvRCNS.c -o biomvRCNS.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o biomvRCNS.dll tmp.def biomvRCNS.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/biomvRCNS.buildbin-libdir/biomvRCNS/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'biomvRCNS' as biomvRCNS_1.32.0.zip * DONE (biomvRCNS) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'biomvRCNS' successfully unpacked and MD5 sums checked