############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/Rhdf5lib_1.14.2.tar.gz && rm -rf Rhdf5lib.buildbin-libdir && mkdir Rhdf5lib.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rhdf5lib.buildbin-libdir Rhdf5lib_1.14.2.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Rhdf5lib_1.14.2.zip && rm Rhdf5lib_1.14.2.tar.gz Rhdf5lib_1.14.2.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 61 9294k 61 5734k 0 0 6469k 0 0:00:01 --:--:-- 0:00:01 6472k 100 9294k 100 9294k 0 0 7591k 0 0:00:01 0:00:01 --:--:-- 7600k install for i386 * installing *source* package 'Rhdf5lib' ... ** using staged installation untarring hdf5_headers_1.10.7.tar.gz ... ** libs mkdir -p "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "winlib-8.3.0/i386/libhdf5.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libhdf5.a" cp "winlib-8.3.0/i386/libhdf5_cpp.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libhdf5_cpp.a" cp "winlib-8.3.0/i386/libhdf5_hl.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libhdf5_hl.a" cp "winlib-8.3.0/i386/libhdf5_hl_cpp.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libhdf5_hl_cpp.a" cp "winlib-8.3.0/i386/libszip.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libszip.a" cp ./hdf5/*.h "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp ./hdf5/c++/*.h "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp ./hdf5/hl/*.h "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" "C:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386/Rscript.exe" "../tools/winlibs.R" 7.64.1 C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/ Copying Winlibs C:\Users\biocbuild\bbs-3.13-bioc\tmpdir\Rtmp2ToKrM/libcurl [1] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/README.md" [2] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/include/curl/curl.h" [3] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/include/curl/curlver.h" [4] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/include/curl/easy.h" [5] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/include/curl/mprintf.h" [6] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/include/curl/multi.h" [7] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/include/curl/stdcheaders.h" [8] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/include/curl/system.h" [9] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/include/curl/typecheck-gcc.h" [10] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/include/curl/urlapi.h" [11] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/i386/libcrypto.a" [12] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/i386/libcurl.a" [13] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/i386/libssh2.a" [14] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/i386/libssl.a" [15] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/x64-ucrt/libcrypto.a" [16] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/x64-ucrt/libcurl.a" [17] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/x64-ucrt/libssh2.a" [18] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/x64-ucrt/libssl.a" [19] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/x64/libcrypto.a" [20] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/x64/libcurl.a" [21] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/x64/libssh2.a" [22] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/x64/libssl.a" C:\Users\biocbuild\bbs-3.13-bioc\tmpdir\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/i386/libcrypto.aC:\Users\biocbuild\bbs-3.13-bioc\tmpdir\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/i386/libcurl.aC:\Users\biocbuild\bbs-3.13-bioc\tmpdir\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/i386/libssh2.aC:\Users\biocbuild\bbs-3.13-bioc\tmpdir\Rtmp2ToKrM/libcurl/libcurl-7.64.1/lib/i386/libssl.a ARCH: i386/ [[1]] [1] TRUE [[2]] [1] TRUE [[3]] [1] TRUE [[4]] [1] TRUE "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -I./hdf5 -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rhdf5lib.c -o Rhdf5lib.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o Rhdf5lib.dll tmp.def Rhdf5lib.o winlib-8.3.0//i386/libhdf5.a winlib-8.3.0//i386/libszip.a -lpsapi -lz -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Rhdf5lib' finding HTML links ... done Rhdf5lib html dot-curlStatus html dot-getDynamicLinks html getHdf5Version html pkgconfig html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'Rhdf5lib' ... untarring hdf5_headers_1.10.7.tar.gz ... ** libs mkdir -p "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include" cp "winlib-8.3.0/x64/libhdf5.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5.a" cp "winlib-8.3.0/x64/libhdf5_cpp.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5_cpp.a" cp "winlib-8.3.0/x64/libhdf5_hl.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5_hl.a" cp "winlib-8.3.0/x64/libhdf5_hl_cpp.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5_hl_cpp.a" cp "winlib-8.3.0/x64/libszip.a" "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libszip.a" cp ./hdf5/*.h "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include" cp ./hdf5/c++/*.h "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include" cp ./hdf5/hl/*.h "C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include" "C:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64/Rscript.exe" "../tools/winlibs.R" 7.64.1 C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/ Copying Winlibs C:\Users\biocbuild\bbs-3.13-bioc\tmpdir\RtmpK2QYqw/libcurl [1] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/README.md" [2] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/include/curl/curl.h" [3] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/include/curl/curlver.h" [4] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/include/curl/easy.h" [5] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/include/curl/mprintf.h" [6] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/include/curl/multi.h" [7] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/include/curl/stdcheaders.h" [8] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/include/curl/system.h" [9] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/include/curl/typecheck-gcc.h" [10] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/include/curl/urlapi.h" [11] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/i386/libcrypto.a" [12] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/i386/libcurl.a" [13] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/i386/libssh2.a" [14] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/i386/libssl.a" [15] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64-ucrt/libcrypto.a" [16] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64-ucrt/libcurl.a" [17] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64-ucrt/libssh2.a" [18] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64-ucrt/libssl.a" [19] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64/libcrypto.a" [20] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64/libcurl.a" [21] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64/libssh2.a" [22] "C:\\Users\\biocbuild\\bbs-3.13-bioc\\tmpdir\\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64/libssl.a" C:\Users\biocbuild\bbs-3.13-bioc\tmpdir\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64/libcrypto.aC:\Users\biocbuild\bbs-3.13-bioc\tmpdir\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64/libcurl.aC:\Users\biocbuild\bbs-3.13-bioc\tmpdir\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64/libssh2.aC:\Users\biocbuild\bbs-3.13-bioc\tmpdir\RtmpK2QYqw/libcurl/libcurl-7.64.1/lib/x64/libssl.a ARCH: x64/ [[1]] [1] TRUE [[2]] [1] TRUE [[3]] [1] TRUE [[4]] [1] TRUE "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -I./hdf5 -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rhdf5lib.c -o Rhdf5lib.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o Rhdf5lib.dll tmp.def Rhdf5lib.o winlib-8.3.0//x64/libhdf5.a winlib-8.3.0//x64/libszip.a -lpsapi -lz -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'Rhdf5lib' as Rhdf5lib_1.14.2.zip * DONE (Rhdf5lib) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'Rhdf5lib' successfully unpacked and MD5 sums checked