############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GenomicDataCommons.buildbin-libdir && mkdir GenomicDataCommons.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicDataCommons.buildbin-libdir GenomicDataCommons_1.16.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'GenomicDataCommons' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GenomicDataCommons' finding HTML links ... done GenomicDataCommons html aggregations html available_expand html available_fields html available_values html constants html count html default_fields html dot-htseq_importer html entity_name html expand html faceting html field_description html filtering html gdc_cache html gdc_client html gdc_clinical html gdc_rnaseq html gdc_token html gdcdata html grep_fields html finding level-2 HTML links ... done Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpWwG5ib/R.INSTALL551c1b0a646/GenomicDataCommons/man/grep_fields.Rd:10: missing link '.gdc_entities' id_field html ids html make_filter html manifest html mapping html query html Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpWwG5ib/R.INSTALL551c1b0a646/GenomicDataCommons/man/query.Rd:46: missing link 'facets' Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpWwG5ib/R.INSTALL551c1b0a646/GenomicDataCommons/man/query.Rd:53: missing link 'available_expands' readDNAcopy html readHTSeqFile html response html results html results_all html select html slicing html status html transfer html write_manifest html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GenomicDataCommons' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'GenomicDataCommons' as GenomicDataCommons_1.16.0.zip * DONE (GenomicDataCommons)