############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GeneAnswers_2.34.0.tar.gz && rm -rf GeneAnswers.buildbin-libdir && mkdir GeneAnswers.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneAnswers.buildbin-libdir GeneAnswers_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GeneAnswers_2.34.0.zip && rm GeneAnswers_2.34.0.tar.gz GeneAnswers_2.34.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 3 32.6M 3 1038k 0 0 1529k 0 0:00:21 --:--:-- 0:00:21 1529k 10 32.6M 10 3634k 0 0 2148k 0 0:00:15 0:00:01 0:00:14 2149k 21 32.6M 21 7062k 0 0 2643k 0 0:00:12 0:00:02 0:00:10 2644k 24 32.6M 24 8305k 0 0 2254k 0 0:00:14 0:00:03 0:00:11 2254k 24 32.6M 24 8341k 0 0 1782k 0 0:00:18 0:00:04 0:00:14 1781k 27 32.6M 27 9237k 0 0 1619k 0 0:00:20 0:00:05 0:00:15 1631k 35 32.6M 35 11.6M 0 0 1793k 0 0:00:18 0:00:06 0:00:12 1672k 46 32.6M 46 15.2M 0 0 2034k 0 0:00:16 0:00:07 0:00:09 1708k 59 32.6M 59 19.5M 0 0 2311k 0 0:00:14 0:00:08 0:00:06 2352k 75 32.6M 75 24.4M 0 0 2590k 0 0:00:12 0:00:09 0:00:03 3346k 91 32.6M 91 29.8M 0 0 2858k 0 0:00:11 0:00:10 0:00:01 4275k 100 32.6M 100 32.6M 0 0 3011k 0 0:00:11 0:00:11 --:--:-- 4849k install for i386 * installing *source* package 'GeneAnswers' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers' Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers' ** help *** installing help indices converting help for package 'GeneAnswers' finding HTML links ... done DO html DOLite html DOLiteTerm html DmIALite html GeneAnswers-class html GeneAnswers-package html HsIALite html MmIALite html RnIALite html buildNet html caBIO.PATHGenes html caBIO2entrez html categoryNet html chartPlots html drawTable html entrez2caBIO html geneAnnotationHeatmap html geneAnswersBuilder html geneAnswersChartPlots html geneAnswersConceptNet html geneAnswersConceptRelation html geneAnswersConcepts html geneAnswersHeatmap html geneAnswersHomoMapping html geneAnswersReadable html geneAnswersSort html geneConceptNet html getCategoryList html getCategoryTerms html getConceptTable html getConnectedGraph html getDOLiteTerms html getGOList html getHomoGeneIDs html getListGIF html getMultiLayerGraphIDs html getNextGOIDs html getPATHList html getPATHTerms html getREACTOMEPATHList html getREACTOMEPATHTerms html getSingleLayerGraphIDs html getSymbols html getTotalGeneNumber html getcaBIOPATHList html getcaBIOPATHTerms html groupReport html humanExpr html humanGeneInput html mouseExpr html mouseGeneInput html sampleGroupsData html searchEntrez html topCategory html topCategoryGenes html topDOLITE html topDOLITEGenes html topGO html topGOGenes html topPATH html topPATHGenes html topREACTOME.PATH html topREACTOME.PATHGenes html topcaBIO.PATH html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers' Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers' ** testing if installed package can be loaded from final location Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers' Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GeneAnswers' ... ** testing if installed package can be loaded Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers' Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers' * MD5 sums packaged installation of 'GeneAnswers' as GeneAnswers_2.34.0.zip * DONE (GeneAnswers) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'GeneAnswers' successfully unpacked and MD5 sums checked