############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CrispRVariants_1.20.0.tar.gz && rm -rf CrispRVariants.buildbin-libdir && mkdir CrispRVariants.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CrispRVariants.buildbin-libdir CrispRVariants_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CrispRVariants_1.20.0.zip && rm CrispRVariants_1.20.0.tar.gz CrispRVariants_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 16 1409k 16 232k 0 0 874k 0 0:00:01 --:--:-- 0:00:01 875k 90 1409k 90 1275k 0 0 1030k 0 0:00:01 0:00:01 --:--:-- 1030k 100 1409k 100 1409k 0 0 1104k 0 0:00:01 0:00:01 --:--:-- 1104k install for i386 * installing *source* package 'CrispRVariants' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CrispRVariants' finding HTML links ... done CrisprRun-class html CrisprSet-class html abifToFastq html addClipped html addCodonFrame html alleleLabelsHelpers html alleles html alns html annotateGenePlot html arrangePlots html barplotAlleleFreqs html collapsePairs html consensusSeqs html dispatchDots html excludeFromBam html explodeCigarOpCombs html findChimeras html findSNVs html getAxisCoords html getChimeras html getInsertionsTable html gol_clutch1 html indelCounts html indelLabels html intersperse html makeAlignmentTilePlot html mergeChimeras html mergeCrisprSets html mismatchLabels html mutationEfficiency html narrowAlignments html plotAlignments html plotChimeras html plotFreqHeatmap html plotVariants html rcAlns html readTargetBam html readsByPCRPrimer html readsToTarget html refFromAlns html reverseCigar html rmMultiPCRChimera html selectAlnRegionsHelpers html selectOps html seqsToAln html setDNATileColours html setMismatchTileColours html transformAlnsToLong html variantCounts html writeFastq html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CrispRVariants' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'CrispRVariants' as CrispRVariants_1.20.0.zip * DONE (CrispRVariants) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'CrispRVariants' successfully unpacked and MD5 sums checked