############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CoreGx_1.4.2.tar.gz && rm -rf CoreGx.buildbin-libdir && mkdir CoreGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CoreGx.buildbin-libdir CoreGx_1.4.2.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CoreGx_1.4.2.zip && rm CoreGx_1.4.2.tar.gz CoreGx_1.4.2.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 95 1200k 95 1152k 0 0 1143k 0 0:00:01 0:00:01 --:--:-- 1145k 100 1200k 100 1200k 0 0 1147k 0 0:00:01 0:00:01 --:--:-- 1148k install for i386 * installing *source* package 'CoreGx' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB Registered S3 method overwritten by 'ggplot2': method from print.element sets Creating a generic function for 'colnames' from package 'base' in package 'CoreGx' Creating a generic function for 'rownames' from package 'base' in package 'CoreGx' ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CoreGx' finding HTML links ... done CoreSet-accessors html CoreSet-class html CoreSet html Create html DataMapper-accessors html DataMapper-class html LongTable-class html LongTable html LongTableDataMapper-accessors html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/CoreGx.buildbin-libdir/00LOCK-CoreGx/00new/CoreGx/help/assayMap+2CLongTableDataMapper+2CList-method.html LongTableDataMapper-class html LongTableDataMapper html amcc html as html as.data.frame.LongTable html as.data.table.LongTable html as.long.table html assayCols html buildLongTable html callingWaterfall html cash-LongTable-method html cash-set-LongTable-method html checkColumnCardinality html checkCsetStructure html clevelandSmall_cSet html colIDs html colMeta html connectivityScore html cosinePerm html dot- html dot-convertCSetMolecularProfilesToSE html dot-distancePointLine html dot-distancePointSegment html dot-intersectList html dot-sensitivityToLongTable html dot-symSetDiffList html dot-unionList html drugSensitivitySig html exampleDataMapper html getIntern html guessMapping-LongTableDataMapper-method html guessMapping html gwc html idCols-LongTable-method html idCols html is.items html lapply-MultiAssayExperiment-method html list_or_LongTable-class html mcc html merckLongTable html metaConstruct html metadata-LongTable-method html metadata-set-LongTable-method html reindex-LongTable-method html reindex html rowIDs html rowMeta html sensitivityInfo-set html sensitivityInfo html sensitivityMeasures-set html sensitivityMeasures html sensitivityProfiles-set html sensitivityProfiles html sensitivityRaw-set html sensitivityRaw html sensitivitySlotToLongTable html show-CoreSet-method html show-LongTable-method html showSigAnnot html sub-LongTable-ANY-ANY-ANY-method html sub-subset-LongTable-ANY-ANY-method html subset-LongTable-method html subsetTo html summarizeMolecularProfiles html summarizeSensitivityProfiles html updateCellId html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CoreGx' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'CoreGx' as CoreGx_1.4.2.zip * DONE (CoreGx) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'CoreGx' successfully unpacked and MD5 sums checked