Y-h. Taguchi
| Snapshot Date: 2020-04-14 09:30:11 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/miRNATarget |
| Branch: RELEASE_3_10 |
| Last Commit: 1463ad6 |
| Last Changed Date: 2019-10-29 13:29:37 -0400 (Tue, 29 Oct 2019) |
| Back to Build/check report for BioC 3.10 experimental data |
This page was generated on 2020-04-14 17:46:19 -0400 (Tue, 14 Apr 2020).
| Package 227/384 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| miRNATarget 1.24.0 Y-h. Taguchi
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |
| Package: miRNATarget |
| Version: 1.24.0 |
| Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings miRNATarget_1.24.0.tar.gz |
| StartedAt: 2020-04-14 13:06:54 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 13:08:18 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 83.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: miRNATarget.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings miRNATarget_1.24.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.10-data-experiment/meat/miRNATarget.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.24.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 59.6Mb
sub-directories of 1Mb or more:
data 59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/home/biocbuild/bbs-3.10-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.
miRNATarget.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL miRNATarget ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’ * installing *source* package ‘miRNATarget’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (miRNATarget)
miRNATarget.Rcheck/miRNATarget-Ex.timings
| name | user | system | elapsed | |
| HS_conv_id | 0.012 | 0.004 | 0.013 | |
| HS_refseq_to_affy_hc_g110 | 0.004 | 0.000 | 0.005 | |
| HS_refseq_to_affy_hg_focus | 0.012 | 0.008 | 0.019 | |
| HS_refseq_to_affy_hg_u133_plus_2 | 0.068 | 0.004 | 0.070 | |
| HS_refseq_to_affy_hg_u133a | 0.040 | 0.000 | 0.042 | |
| HS_refseq_to_affy_hg_u133a_2 | 0.040 | 0.000 | 0.042 | |
| HS_refseq_to_affy_hg_u133b | 0.020 | 0.004 | 0.021 | |
| HS_refseq_to_affy_hg_u95a | 0.028 | 0.000 | 0.029 | |
| HS_refseq_to_affy_hg_u95av2 | 0.024 | 0.000 | 0.025 | |
| HS_refseq_to_affy_hg_u95b | 0.016 | 0.000 | 0.016 | |
| HS_refseq_to_affy_hg_u95c | 0.012 | 0.000 | 0.012 | |
| HS_refseq_to_affy_hg_u95d | 0.008 | 0.000 | 0.008 | |
| HS_refseq_to_affy_hg_u95e | 0.012 | 0.000 | 0.012 | |
| HS_refseq_to_affy_huex_1_0_st_v2 | 1.004 | 0.028 | 1.033 | |
| HS_refseq_to_affy_hugene_1_0_st_v1 | 0.056 | 0.000 | 0.056 | |
| HS_refseq_to_affy_hugenefl | 0.012 | 0.000 | 0.015 | |
| HS_refseq_to_affy_u133_x3p | 0.080 | 0.000 | 0.082 | |
| HS_refseq_to_agilent_cgh_44b | 0.016 | 0.000 | 0.014 | |
| HS_refseq_to_agilent_wholegenome | 0.076 | 0.000 | 0.076 | |
| HS_refseq_to_canonical_transcript_stable_id | 0.072 | 0.000 | 0.072 | |
| HS_refseq_to_ccds | 0.044 | 0.000 | 0.043 | |
| HS_refseq_to_codelink | 0.044 | 0.000 | 0.044 | |
| HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k | 0.000 | 0.000 | 0.002 | |
| HS_refseq_to_efg_agilent_wholegenome_4x44k_v1 | 0.004 | 0.000 | 0.002 | |
| HS_refseq_to_efg_agilent_wholegenome_4x44k_v2 | 0.000 | 0.000 | 0.002 | |
| HS_refseq_to_embl | 0.824 | 0.016 | 0.840 | |
| HS_refseq_to_ensembl_exon_id | 0.000 | 0.000 | 0.001 | |
| HS_refseq_to_ensembl_gene_id | 0.056 | 0.000 | 0.053 | |
| HS_refseq_to_ensembl_peptide_id | 0.044 | 0.000 | 0.047 | |
| HS_refseq_to_ensembl_transcript_id | 0.06 | 0.00 | 0.06 | |
| HS_refseq_to_entrezgene | 0.048 | 0.004 | 0.051 | |
| HS_refseq_to_hgnc_id | 0.188 | 0.000 | 0.190 | |
| HS_refseq_to_hgnc_symbol | 0.044 | 0.004 | 0.046 | |
| HS_refseq_to_hgnc_transcript_name | 0.052 | 0.000 | 0.052 | |
| HS_refseq_to_illumina_humanht_12 | 0.056 | 0.000 | 0.055 | |
| HS_refseq_to_illumina_humanwg_6_v1 | 0.048 | 0.000 | 0.047 | |
| HS_refseq_to_illumina_humanwg_6_v2 | 0.044 | 0.000 | 0.042 | |
| HS_refseq_to_illumina_humanwg_6_v3 | 0.052 | 0.000 | 0.051 | |
| HS_refseq_to_interpro | 0.128 | 0.000 | 0.129 | |
| HS_refseq_to_ipi | 0.112 | 0.000 | 0.113 | |
| HS_refseq_to_merops | 0.008 | 0.000 | 0.005 | |
| HS_refseq_to_pdb | 0.092 | 0.000 | 0.094 | |
| HS_refseq_to_pfam | 0.076 | 0.000 | 0.073 | |
| HS_refseq_to_phalanx_onearray | 0.048 | 0.000 | 0.046 | |
| HS_refseq_to_protein_id | 1.240 | 0.000 | 1.242 | |
| HS_refseq_to_refseq_dna | 0.056 | 0.000 | 0.056 | |
| HS_refseq_to_refseq_genomic | 0.000 | 0.004 | 0.001 | |
| HS_refseq_to_refseq_peptide | 0.100 | 0.000 | 0.099 | |
| HS_refseq_to_rfam | 0.000 | 0.000 | 0.002 | |
| HS_refseq_to_rfam_gene_name | 0.000 | 0.000 | 0.001 | |
| HS_refseq_to_rfam_transcript_name | 0.000 | 0.000 | 0.001 | |
| HS_refseq_to_smart | 0.040 | 0.000 | 0.038 | |
| HS_refseq_to_tigrfam | 0.004 | 0.000 | 0.006 | |
| HS_refseq_to_ucsc | 0.052 | 0.000 | 0.053 | |
| HS_refseq_to_unigene | 0.064 | 0.000 | 0.067 | |
| HS_refseq_to_uniprot_genename | 0.040 | 0.004 | 0.043 | |
| HS_refseq_to_uniprot_genename_transcript_name | 0.004 | 0.000 | 0.001 | |
| HS_refseq_to_uniprot_sptrembl | 0.000 | 0.000 | 0.001 | |
| HS_refseq_to_uniprot_swissprot | 0.004 | 0.000 | 0.001 | |
| HS_refseq_to_uniprot_swissprot_accession | 0.000 | 0.000 | 0.002 | |
| HS_refseq_to_wikigene_id | 0.004 | 0.000 | 0.001 | |
| HS_refseq_to_wikigene_name | 0.048 | 0.000 | 0.049 | |
| MM_conv_id | 0.004 | 0.000 | 0.002 | |
| MM_refseq_to_affy_mg_u74a | 0.016 | 0.000 | 0.017 | |
| MM_refseq_to_affy_mg_u74av2 | 0.012 | 0.004 | 0.016 | |
| MM_refseq_to_affy_mg_u74b | 0.012 | 0.000 | 0.013 | |
| MM_refseq_to_affy_mg_u74bv2 | 0.012 | 0.000 | 0.012 | |
| MM_refseq_to_affy_mg_u74c | 0.004 | 0.000 | 0.004 | |
| MM_refseq_to_affy_mg_u74cv2 | 0.008 | 0.000 | 0.006 | |
| MM_refseq_to_affy_moe430a | 0.032 | 0.000 | 0.033 | |
| MM_refseq_to_affy_moe430b | 0.012 | 0.004 | 0.015 | |
| MM_refseq_to_affy_moex_1_0_st_v1 | 0.400 | 0.012 | 0.410 | |
| MM_refseq_to_affy_mogene_1_0_st_v1 | 0.044 | 0.000 | 0.042 | |
| MM_refseq_to_affy_mouse430_2 | 0.044 | 0.000 | 0.045 | |
| MM_refseq_to_affy_mouse430a_2 | 0.028 | 0.004 | 0.033 | |
| MM_refseq_to_affy_mu11ksuba | 0.008 | 0.000 | 0.011 | |
| MM_refseq_to_affy_mu11ksubb | 0.004 | 0.004 | 0.008 | |
| MM_refseq_to_agilent_wholegenome | 0.056 | 0.000 | 0.057 | |
| MM_refseq_to_canonical_transcript_stable_id | 0.052 | 0.004 | 0.055 | |
| MM_refseq_to_ccds | 0.032 | 0.000 | 0.030 | |
| MM_refseq_to_codelink | 0.032 | 0.000 | 0.032 | |
| MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k | 0.004 | 0.000 | 0.002 | |
| MM_refseq_to_efg_agilent_wholegenome_4x44k_v1 | 0.000 | 0.000 | 0.001 | |
| MM_refseq_to_efg_agilent_wholegenome_4x44k_v2 | 0.000 | 0.000 | 0.001 | |
| MM_refseq_to_embl | 0.304 | 0.004 | 0.308 | |
| MM_refseq_to_ensembl_exon_id | 0.000 | 0.000 | 0.001 | |
| MM_refseq_to_ensembl_gene_id | 0.164 | 0.004 | 0.167 | |
| MM_refseq_to_ensembl_peptide_id | 0.036 | 0.000 | 0.036 | |
| MM_refseq_to_ensembl_transcript_id | 0.040 | 0.000 | 0.041 | |
| MM_refseq_to_entrezgene | 0.032 | 0.004 | 0.035 | |
| MM_refseq_to_fantom | 0.104 | 0.000 | 0.104 | |
| MM_refseq_to_illumina_mousewg_6_v1 | 0.052 | 0.000 | 0.053 | |
| MM_refseq_to_illumina_mousewg_6_v2 | 0.052 | 0.000 | 0.054 | |
| MM_refseq_to_interpro | 0.104 | 0.004 | 0.108 | |
| MM_refseq_to_ipi | 0.000 | 0.004 | 0.001 | |
| MM_refseq_to_merops | 0.004 | 0.000 | 0.004 | |
| MM_refseq_to_mgi_id | 0.036 | 0.000 | 0.039 | |
| MM_refseq_to_mgi_symbol | 0.040 | 0.000 | 0.039 | |
| MM_refseq_to_mgi_transcript_name | 0.040 | 0.000 | 0.043 | |
| MM_refseq_to_pdb | 0.008 | 0.000 | 0.011 | |
| MM_refseq_to_pfam | 0.064 | 0.000 | 0.063 | |
| MM_refseq_to_phalanx_onearray | 0.040 | 0.000 | 0.039 | |
| MM_refseq_to_protein_id | 0.296 | 0.000 | 0.296 | |
| MM_refseq_to_refseq_dna | 0.048 | 0.000 | 0.046 | |
| MM_refseq_to_refseq_peptide | 0.08 | 0.00 | 0.08 | |
| MM_refseq_to_rfam | 0.004 | 0.000 | 0.001 | |
| MM_refseq_to_rfam_gene_name | 0.000 | 0.000 | 0.001 | |
| MM_refseq_to_rfam_transcript_name | 0.000 | 0.000 | 0.002 | |
| MM_refseq_to_smart | 0.032 | 0.000 | 0.030 | |
| MM_refseq_to_tigrfam | 0.004 | 0.000 | 0.005 | |
| MM_refseq_to_ucsc | 0.040 | 0.000 | 0.041 | |
| MM_refseq_to_unigene | 0.052 | 0.000 | 0.053 | |
| MM_refseq_to_uniprot_genename | 0.036 | 0.000 | 0.036 | |
| MM_refseq_to_uniprot_genename_transcript_name | 0.004 | 0.000 | 0.001 | |
| MM_refseq_to_uniprot_sptrembl | 0.000 | 0.000 | 0.001 | |
| MM_refseq_to_uniprot_swissprot | 0.004 | 0.000 | 0.001 | |
| MM_refseq_to_uniprot_swissprot_accession | 0.000 | 0.000 | 0.002 | |
| MM_refseq_to_wikigene_id | 0.004 | 0.000 | 0.001 | |
| MM_refseq_to_wikigene_name | 0.032 | 0.000 | 0.034 | |
| TBL2 | 1.372 | 0.048 | 1.417 | |
| TBL2_HS | 1.504 | 0.104 | 1.612 | |
| TBL2_MM | 0.828 | 0.072 | 0.903 | |
| conv_id | 0.004 | 0.000 | 0.002 | |
| id_conv | 0.028 | 0.000 | 0.030 | |