simpleaffy 2.20.0
Crispin Miller
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/simpleaffy | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | [ OK ] | OK | OK |
* checking for file 'simpleaffy/DESCRIPTION' ... OK
* preparing 'simpleaffy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package ‘simpleaffy’ ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -c simpleaffy.c -o simpleaffy.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o simpleaffy.so simpleaffy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c simpleaffy.c -o simpleaffy.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o simpleaffy.so simpleaffy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc64
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64 -I/usr/local/include -fPIC -g -O2 -Wall -c simpleaffy.c -o simpleaffy.o
gcc-4.2 -arch ppc64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o simpleaffy.so simpleaffy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c simpleaffy.c -o simpleaffy.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o simpleaffy.so simpleaffy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: Biostrings
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from package:base :
cbind,
duplicated,
order,
pmax,
pmax.int,
pmin,
pmin.int,
rank,
rbind,
rep.int,
sapply,
sort,
table,
unique
** help
*** installing help indices
>>> Building/Updating help pages for package 'simpleaffy'
Formats: text html latex example
Note: removing empty section \seealso in file 'PairComp-class.Rd'
PairComp-class text html latex
QCStats-class text html latex
all.present text html latex example
all.present.in.group text html latex example
bg.correct.sa text html latex example
Note: removing empty section \details in file 'call.exprs.Rd'
call.exprs text html latex example
detection.p.val text html latex example
get.annotation text html latex example
Note: removing empty section \seealso in file 'get.array.indices.Rd'
get.array.indices text html latex example
get.array.subset text html latex example
get.array.subset.affy text html latex example
get.fold.change.and.t.test text html latex example
hmap.colors text html latex example
hmap.eset text html latex example
hmap.pc text html latex example
journalpng text html latex example
justMAS text html latex example
pairwise.comparison text html latex example
pairwise.filter text html latex example
plot.pairwise.comparison text html latex example
plot.qc.stats text html latex example
qc text html latex example
qc.affy text html latex example
Note: removing empty section \note in file 'qc.get.alpha1.Rd'
qc.get.alpha1 text html latex example
Note: removing empty section \note in file 'qc.get.array.Rd'
qc.get.array text html latex example
Note: removing empty section \note in file 'qc.get.probes.Rd'
qc.get.probes text html latex example
Note: removing empty section \note in file 'qc.get.ratios.Rd'
qc.get.ratios text html latex example
Note: removing empty section \note in file 'qc.get.spikes.Rd'
qc.get.spikes text html latex example
Note: removing empty section \note in file 'qc.have.params.Rd'
qc.have.params text html latex example
Note: removing empty section \note in file 'qc.ok.Rd'
Note: removing empty section \arguments in file 'qc.ok.Rd'
qc.ok text html latex example
Note: removing empty section \note in file 'qc.read.file.Rd'
qc.read.file text html latex example
qc.stats text html latex example
Note: removing empty section \details in file 'read.affy.Rd'
read.affy text html latex example
Note: removing empty section \details in file 'read.affy.mixed.Rd'
read.affy.mixed text html latex example
Note: removing empty section \note in file 'setQCEnvironment.Rd'
setQCEnvironment text html latex example
Note: removing empty section \value in file 'simpleaffy-deprecated.Rd'
Note: removing empty section \note in file 'simpleaffy-deprecated.Rd'
simpleaffy-deprecated text html latex example
standard.pearson text html latex example
trad.scatter.plot text html latex example
** building package indices ...
* DONE (simpleaffy)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'simpleaffy_2.20.0.tar.gz'