externalVector 1.10.0
Biocore Team c/o BioC user list
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/externalVector | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/externalVector.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'externalVector/DESCRIPTION' ... OK
* this is package 'externalVector' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'externalVector' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Arith,externalVectorWithStorage-missing: no visible binding for global
variable '.generic'
Complex,externalVectorWithStorage: no visible binding for global
variable 'x'
external.size,externalResource-gcAllocator: no visible binding for
global variable 'x'
Subset2,ANY-ANY-noneIndex: possible error in Subset(x, i, NULL): unused
argument(s) (NULL)
Subset2,ANY-noneIndex-ANY: possible error in Subset(x, NULL, j): unused
argument(s) (j)
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* Installing *source* package 'externalVector' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c allocator.c -o allocator.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c arraySummary.c -o arraySummary.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c coerce.c -o coerce.o
coerce.c: In function 'ComplexFromString':
coerce.c:213: warning: initialization from incompatible pointer type
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c externalVector.c -o externalVector.o
externalVector.c:7: warning: 'ScalarVector' defined but not used
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c groups.c -o groups.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c math.c -o math.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c slice.c -o slice.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c storage.c -o storage.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c subscript.c -o subscript.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o externalVector.so allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o -L/home/biocbuild/bbs-2.4-bioc/R/lib -lR
** R
** preparing package for lazy loading
Creating a new generic function for "match" in "externalVector"
Creating a new generic function for "as.vector" in "externalVector"
Creating a new generic function for "as.single" in "externalVector"
Creating a new generic function for "as.list" in "externalVector"
Creating a new generic function for "as.matrix" in "externalVector"
Creating a new generic function for "as.data.frame" in "externalVector"
Creating a new generic function for "colSums" in "externalVector"
Creating a new generic function for "colMeans" in "externalVector"
Creating a new generic function for "rowSums" in "externalVector"
Creating a new generic function for "rowMeans" in "externalVector"
Creating a new generic function for "apply" in "externalVector"
Creating a new generic function for "lapply" in "externalVector"
Creating a new generic function for "sapply" in "externalVector"
Creating a new generic function for "mean" in "externalVector"
Creating a new generic function for "median" in "externalVector"
Creating a generic for "var" in package "externalVector"
(the supplied definition differs from and overrides the implicit generic in package "stats": Formal arguments differ (in default values?))
Creating a generic for "cov" in package "externalVector"
(the supplied definition differs from and overrides the implicit generic in package "stats": Formal arguments differ (in default values?))
Creating a generic for "cor" in package "externalVector"
(the supplied definition differs from and overrides the implicit generic in package "stats": Formal arguments differ (in default values?))
Creating a new generic function for "cov2cor" in "externalVector"
** help
*** installing help indices
>>> Building/Updating help pages for package 'externalVector'
Formats: text html latex example
NAIndex-class text html latex
SubscriptList text html latex example
Subset text html latex
allIndex-class text html latex
allNA text html latex example
allocators text html latex
as.Rvector text html latex example
asEach text html latex example
defaultElement text html latex example
exprMatrix-class text html latex
externalAllocator-class text html latex
externalMatrix text html latex example
externalResource-class text html latex
externalStorage-class text html latex
externalVector-class text html latex
externalVector text html latex example
externalVectorWithStorage-class text html latex
gcAllocator-class text html latex example
getExternalStorage text html latex
getNativeStorageMethods text html latex
indirectExternalMatrix-class text html latex
indirectExternalVector-class text html latex
internalType text html latex
makeSlice text html latex example
matrixIndex-class text html latex
nativeStorageMethods-class text html latex
nativeStorageMethodsList-class text html latex
nonSlotAttributes text html latex
noneIndex-class text html latex
positiveIndex-class text html latex
rebind text html latex
setDimNames text html latex
setExternalStorageClass text html latex example
setVirtualMethod text html latex example
simpleStorage-class text html latex
sliceIndex-class text html latex
union-class text html latex
var text html latex example
vectorIndex-class text html latex
** building package indices ...
* DONE (externalVector)