Package: BioMVCClass

Version: 1.12.0

Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes BioMVCClass_1.12.0.tar.gz

StartedAt: 2009-10-20 17:09:04 -0700 (Tue, 20 Oct 2009)

EndedAt: 2009-10-20 17:09:53 -0700 (Tue, 20 Oct 2009)

EllapsedTime: 48.2 seconds

RetCode: 0

Status: OK

CheckDir: BioMVCClass.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/BioMVCClass.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49420)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'BioMVCClass/DESCRIPTION' ... OK
* this is package 'BioMVCClass' version '1.12.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BioMVCClass' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* Installing *source* package ‘BioMVCClass’ ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: grid
Warning in fun(...) :
  Rgraphviz built with Graphviz version 2.22.2.
Found installed Graphviz version 2.24.0. This _may_ cause problems.

Attaching package: 'Rgraphviz'


	The following object(s) are masked from package:MVCClass :

	 from 

** help
*** installing help indices
 >>> Building/Updating help pages for package 'BioMVCClass'
     Formats: text html latex example 
Note: removing empty section \examples in file 'GSE-class.Rd'
  GSE-class                         text    html    latex
Note: removing empty section \examples in file 'exprModel-class.Rd'
  exprModel-class                   text    html    latex
Note: removing empty section \examples in file 'graphModel-class.Rd'
  graphModel-class                  text    html    latex
Note: removing empty section \examples in file 'graphView-class.Rd'
  graphView-class                   text    html    latex
Note: removing empty section \examples in file 'gseModel-class.Rd'
  gseModel-class                    text    html    latex
Note: removing empty section \examples in file 'heatmapView-class.Rd'
  heatmapView-class                 text    html    latex
** building package indices ...
* DONE (BioMVCClass)