OCplus 1.14.0
Alexander Ploner
| Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/OCplus | | Last Changed Rev: 31430 / Revision: 33132 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | [ OK ] | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/OCplus.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ISO8859-1
* checking for file 'OCplus/DESCRIPTION' ... OK
* this is package 'OCplus' version '1.14.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'OCplus' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.FDR.result':
plot.FDR.result
S3 methods shown with full name in documentation object 'plot.fdr1d.result':
plot.fdr1d.result
S3 methods shown with full name in documentation object 'plot.fdr2d.result':
plot.fdr2d.result
S3 methods shown with full name in documentation object 'summary.fdr.result':
summary.fdr.result
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* creating OCplus-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating OCplus-manual.tex ... OK
* checking OCplus-manual.tex using pdflatex ... OK
* Installing *source* package 'OCplus' ...
** R
** inst
** preparing package for lazy loading
Loading required package: akima
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: survival
Loading required package: splines
** help
Note: unmatched right brace in file 'plot.fdr2d.result.Rd' on or after line 43
Note: removing empty section \examples
>>> Building/Updating help pages for package 'OCplus'
Formats: text html latex example
DrawContourlines text html latex
EOC text html latex example
FDR text html latex example
MAsim.smyth text html latex example
OCshow text html latex example
TOC text html latex example
Undocumented text html latex
average.fdr text html latex example
fdr1d text html latex example
fdr2d text html latex example
plot.FDR.result text html latex example
plot.fdr1d.result text html latex example
plot.fdr2d.result text html latex example
samplesize text html latex example
smooth1d text html latex example
summary.fdr.result text html latex example
tMixture text html latex example
tstatistics text html latex
** building package indices ...
* DONE (OCplus)