Biobase 2.0.1
Biocore Team c/o BioC user list
| Snapshot Date: 2008-08-08 00:12:03 -0700 (Fri, 08 Aug 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/Biobase | | Last Changed Rev: 31548 / Revision: 33132 | | Last Changed Date: 2008-05-07 20:42:32 -0700 (Wed, 07 May 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/Biobase.Rcheck'
* using R version 2.7.1 (2008-06-23)
* using session charset: ISO8859-1
* checking for file 'Biobase/DESCRIPTION' ... OK
* this is package 'Biobase' version '2.0.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Biobase' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
cache: no visible binding for global variable 'cache_old'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating Biobase-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/cygdrive/e/biocbld/bbs-2.2-bioc/meat/Biobase.Rcheck/tests'
Running 'test-rowMedians.R'
make[1]: Leaving directory `/cygdrive/e/biocbld/bbs-2.2-bioc/meat/Biobase.Rcheck/tests'
OK
* checking package vignettes in 'inst/doc' ... OK
* creating Biobase-manual.tex ... OK
* checking Biobase-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/Biobase.Rcheck
---------- Making package Biobase ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making Rinit.d from Rinit.c
making anyMissing.d from anyMissing.c
making envir.d from envir.c
making matchpt.d from matchpt.c
making rowMedians.d from rowMedians.c
making sublist_extract.d from sublist_extract.c
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c Rinit.c -o Rinit.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c anyMissing.c -o anyMissing.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c envir.c -o envir.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c matchpt.c -o matchpt.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c rowMedians.c -o rowMedians.o
gcc -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c sublist_extract.c -o sublist_extract.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i Biobase_res.rc -o Biobase_res.o
gcc -std=gnu99 -shared -s -o Biobase.dll Biobase.def Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o Biobase_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package Biobase for lazy loading
Loading required package: tools
installing man source files
installing indices
Loading required package: methods
not zipping data
installing help
>>> Building/Updating help pages for package 'Biobase'
Formats: text html latex example chm
Aggregate text html latex example chm
Biobase-package text html latex chm
ScalarObject-class text html latex example chm
abstract text html latex chm
addVig2Menu text html latex example chm
annotatedDataFrameFrom-methods text html latex chm
annotation text html latex chm
anyMissing text html latex example chm
assayData text html latex chm
biocReposList text html latex example chm
cache text html latex example chm
channel text html latex example chm
channelNames text html latex example chm
class.AnnotatedDataFrame text html latex example chm
class.AssayData text html latex chm
class.ExpressionSet text html latex example chm
class.MIAME text html latex chm
class.MultiSet text html latex example chm
class.NChannelSet text html latex example chm
class.SnpSet text html latex chm
class.Versioned text html latex example chm
class.VersionedBiobase text html latex example chm
class.Versions text html latex example chm
class.VersionsNull text html latex example chm
class.aggregator text html latex chm
class.characterORmiame text html latex chm
class.container text html latex example chm
class.eSet text html latex example chm
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data.geneData text html latex example chm
data.reporter text html latex example chm
data.sample.ExpressionSet text html latex example chm
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defunct text html latex chm
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esApply text html latex example chm
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internals text html latex chm
isCurrent text html latex example chm
isUnique text html latex example chm
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lcSuffix text html latex example chm
listLen text html latex example chm
makeDataPackage text html latex example chm
matchpt text html latex example chm
multiassign text html latex example chm
note text html latex example chm
notes text html latex chm
openPDF text html latex example chm
openVignette text html latex example chm
package.version text html latex example chm
phenoData text html latex chm
read.AnnotatedDataFrame text html latex example chm
read.MIAME text html latex example chm
readExpressionSet text html latex example chm
reverseSplit text html latex example chm
rowMedians text html latex example chm
rowQ text html latex example chm
selectChannels text html latex example chm
selectSome text html latex example chm
storageMode text html latex chm
strbreak text html latex example chm
subListExtract text html latex example chm
testBioCConnection text html latex example chm
updateObject text html latex example chm
updateOldESet text html latex example chm
userQuery text html latex chm
validMsg text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\Biobase.Rcheck\00_pkg_src\Biobase\chm\Biobase.chm
Compile time: 0 minutes, 2 seconds
80 Topics
697 Local links
6 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\Biobase.Rcheck\00_pkg_src\Biobase\chm\Biobase.chm, 127,520 bytes
Compression decreased file by 265,723 bytes.
adding MD5 sums
* DONE (Biobase)