ggtut 0.0.46
VJ Carey
| Snapshot Date: 2014-04-04 06:15:32 -0700 (Fri, 04 Apr 2014) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_13/experiment/pkgs/ggtut | | Last Changed Rev: 2557 / Revision: 2768 | | Last Changed Date: 2013-11-01 13:36:05 -0700 (Fri, 01 Nov 2013) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
Scanning files
adding: bam/ (256 bytes security) (stored 0%)
adding: bam/litgm06985.bam (188 bytes security) (deflated 0%)
adding: bam/litgm06985.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm06993_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm06993_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm06994.bam (188 bytes security) (deflated 0%)
adding: bam/litgm06994.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm07000.bam (188 bytes security) (deflated 0%)
adding: bam/litgm07000.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm07022.bam (188 bytes security) (deflated 0%)
adding: bam/litgm07022.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm07034.bam (188 bytes security) (deflated 0%)
adding: bam/litgm07034.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litGM07055_1.bam (188 bytes security) (deflated 0%)
adding: bam/litGM07055_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm07056.bam (188 bytes security) (deflated 0%)
adding: bam/litgm07056.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm07345.bam (188 bytes security) (deflated 0%)
adding: bam/litgm07345.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm11004_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm11004_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm11829.bam (188 bytes security) (deflated 0%)
adding: bam/litgm11829.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm11830.bam (188 bytes security) (deflated 0%)
adding: bam/litgm11830.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm11831_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm11831_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm11832_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm11832_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm11839_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm11839_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm11881_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm11881_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm11882_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm11882_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm11992_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm11992_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm11993_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm11993_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12003_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12003_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12004_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12004_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12005_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12005_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12006_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12006_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12043_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12043_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12044_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12044_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12056_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12056_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12057_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12057_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12144_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12144_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12145_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12145_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12155_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12155_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12264_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12264_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12716_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12716_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12717_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12717_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12750_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12750_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12762_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12762_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12813_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12813_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12814_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12814_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12815_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12815_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12872_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12872_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12874_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12874_1.bam.bai (188 bytes security) (deflated 99%)
adding: bam/litgm12891_1.bam (188 bytes security) (deflated 0%)
adding: bam/litgm12891_1.bam.bai (188 bytes security) (deflated 99%)
adding: data/ (256 bytes security) (stored 0%)
adding: data/bestGenesPerSNP_obs.rda (188 bytes security) (deflated 0%)
adding: data/bestGenesPerSNP_perm.rda (188 bytes security) (deflated 0%)
adding: data/c17imp.rda (188 bytes security) (deflated 0%)
adding: data/CPS17.rda (188 bytes security) (deflated 0%)
adding: data/datalist (188 bytes security) (deflated 27%)
adding: data/g17rngsnr.rda (188 bytes security) (stored 0%)
adding: data/PERMCPS17.rda (188 bytes security) (deflated 0%)
adding: data/permsb1.rda (188 bytes security) (deflated 0%)
adding: data/rsb2_list.rda (188 bytes security) (deflated 0%)
adding: data/rsb2_perm_list.rda (188 bytes security) (deflated 0%)
adding: data/rules.n43.rda (188 bytes security) (deflated 0%)
adding: data/sb1.rda (188 bytes security) (deflated 0%)
adding: data/snpgr17.rda (188 bytes security) (deflated 0%)
adding: data/SVA1.rda (188 bytes security) (deflated 0%)
adding: DESCRIPTION (188 bytes security) (deflated 39%)
adding: ffarchives/ (256 bytes security) (stored 0%)
adding: ffarchives/c17c/ (256 bytes security) (stored 0%)
adding: ffarchives/c17c/foo_chr17_summ.ff (188 bytes security) (deflated 58%)
adding: ffarchives/c17c/foo_chrchr17.ff (188 bytes security) (deflated 39%)
adding: ffarchives/c17c_perm/ (256 bytes security) (stored 0%)
adding: ffarchives/c17c_perm/foo_chr17_summ.ff (188 bytes security) (deflated 58%)
adding: ffarchives/c17c_perm/foo_chrchr17.ff (188 bytes security) (deflated 40%)
adding: ffarchives/twfilt17/ (256 bytes security) (stored 0%)
adding: ffarchives/twfilt17/17_tsinds1_1.ff (188 bytes security) (deflated 58%)
adding: ffarchives/twfilt17/17_tssco1_1.ff (188 bytes security) (deflated 75%)
adding: ffarchives/twfilt_perm17/ (256 bytes security) (stored 0%)
adding: ffarchives/twfilt_perm17/17_tsinds1_1.ff (188 bytes security) (deflated 57%)
adding: ffarchives/twfilt_perm17/17_tssco1_1.ff (188 bytes security) (deflated 75%)
adding: ffobjects/ (256 bytes security) (stored 0%)
adding: ffobjects/f1dm.rda (188 bytes security) (deflated 0%)
adding: ffobjects/permf1dm.rda (188 bytes security) (deflated 0%)
adding: ffobjects/t17f.rda (188 bytes security) (deflated 1%)
adding: ffobjects/t17f_perm.rda (188 bytes security) (deflated 1%)
adding: help/ (256 bytes security) (stored 0%)
adding: help/aliases.rds (188 bytes security) (stored 0%)
adding: help/AnIndex (188 bytes security) (deflated 62%)
adding: help/ggtut.rdb (188 bytes security) (deflated 1%)
adding: help/ggtut.rdx (188 bytes security) (stored 0%)
adding: help/paths.rds (188 bytes security) (stored 0%)
adding: html/ (256 bytes security) (stored 0%)
adding: html/00Index.html (188 bytes security) (deflated 78%)
adding: html/R.css (188 bytes security) (deflated 70%)
adding: images/ (256 bytes security) (stored 0%)
adding: images/cheungCHR1x2.pdf (188 bytes security) (deflated 58%)
adding: images/cheungfig2.pdf (188 bytes security) (deflated 76%)
adding: images/cheungfig2c.pdf (188 bytes security) (deflated 51%)
adding: images/chr17fullLow.pdf (188 bytes security) (deflated 77%)
adding: images/globalImpu17.pdf (188 bytes security) (deflated 74%)
adding: images/ismb11vjc.pdf (188 bytes security) (deflated 8%)
adding: images/ismb2011vjc.pdf (188 bytes security) (deflated 8%)
adding: images/juxta17A.pdf (188 bytes security) (deflated 65%)
adding: images/PGS1low.pdf (188 bytes security) (deflated 66%)
adding: images/RPH3AL.pdf (188 bytes security) (deflated 75%)
adding: images/spata20imp.pdf (188 bytes security) (deflated 74%)
adding: images/strangerSuppExcerpt.pdf (188 bytes security) (deflated 70%)
adding: images/tut11-dodistpl.pdf (188 bytes security) (deflated 87%)
adding: images/tut11-dopl.pdf (188 bytes security) (deflated 76%)
adding: images/tut11-getsn.pdf (188 bytes security) (deflated 78%)
adding: images/tut11-lkass.pdf (188 bytes security) (deflated 79%)
adding: images/tut11-lkm.pdf (188 bytes security) (deflated 78%)
adding: images/tut11-lkpc.pdf (188 bytes security) (deflated 61%)
adding: images/williamsSchem.pdf (188 bytes security) (deflated 52%)
adding: INDEX (188 bytes security) (deflated 48%)
adding: MD5 (188 bytes security) (deflated 53%)
adding: Meta/ (256 bytes security) (stored 0%)
adding: Meta/data.rds (188 bytes security) (stored 0%)
adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
adding: Meta/links.rds (188 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
adding: Meta/package.rds (188 bytes security) (stored 0%)
adding: Meta/Rd.rds (188 bytes security) (stored 0%)
adding: NAMESPACE (188 bytes security) (deflated 14%)
adding: NEWS (188 bytes security) (deflated 30%)
adding: R/ (256 bytes security) (stored 0%)
adding: R/ggtut (188 bytes security) (deflated 41%)
adding: R/ggtut.rdb (188 bytes security) (deflated 20%)
adding: R/ggtut.rdx (188 bytes security) (stored 0%)
adding: scripts/ (256 bytes security) (stored 0%)
adding: scripts/anno4NGS.Rnw (188 bytes security) (deflated 60%)
adding: scripts/doRELOCATE.hist.txt (188 bytes security) (deflated 37%)
adding: scripts/extras.Rnw (188 bytes security) (deflated 61%)
adding: scripts/gddemo.pdf (188 bytes security) (deflated 87%)
adding: scripts/makeFF.R (188 bytes security) (deflated 44%)
adding: scripts/tut11.bib (188 bytes security) (deflated 69%)
adding: scripts/tut11.Rnw (188 bytes security) (deflated 63%)
adding: scripts/tut12.Rnw (188 bytes security) (deflated 63%)