BioC experimental data: CHECK report for XhybCasneuf on moscato1

Package: XhybCasneuf

Version: 1.0.13

Command: rm -rf XhybCasneuf.buildbin-libdir && mkdir XhybCasneuf.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=XhybCasneuf.buildbin-libdir XhybCasneuf_1.0.13.tar.gz >XhybCasneuf-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=XhybCasneuf.buildbin-libdir --install="check:XhybCasneuf-install.out" --force-multiarch --no-vignettes --timings XhybCasneuf_1.0.13.tar.gz && mv XhybCasneuf.buildbin-libdir/* XhybCasneuf.Rcheck/ && rmdir XhybCasneuf.buildbin-libdir

StartedAt: 2014-04-04 12:45:54 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 12:49:56 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 242.7 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: XhybCasneuf.Rcheck

Warnings: 1

* using log directory 'D:/biocbld/bbs-2.13-data-experiment/meat/XhybCasneuf.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'XhybCasneuf/DESCRIPTION' ... OK
* this is package 'XhybCasneuf' version '1.0.13'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'XhybCasneuf' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'RColorBrewer' 'affy' 'ath1121501cdf' 'methods' 'tinesath1cdf'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                         old_size new_size compress
  AffysTissue.noBl.rda      202Kb    154Kb       xz
  AffysTissue.rda           741Kb    491Kb       xz
  AffysTissueMC.rda         886Kb    590Kb       xz
  CustomsTissue.noBl.rda    153Kb    120Kb       xz
  CustomsTissue.rda         552Kb    373Kb       xz
  CustomsTissueMC.rda       688Kb    465Kb       xz
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [7s] OK
** running examples for arch 'x64' ... [5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-data-experiment/meat/XhybCasneuf.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'XhybCasneuf' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'XhybCasneuf' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'XhybCasneuf' as XhybCasneuf_1.0.13.zip
* DONE (XhybCasneuf)

name	user	system	elapsed
AffysTissue	0.54	0.02	0.56
CustomsTissue	0.16	0.02	0.17
XhybExamples-class	0.05	0.02	0.07
ex1	0.04	0.01	0.07
runSimulation	0.05	0.00	0.04

name	user	system	elapsed
AffysTissue	0.47	0.02	0.49
CustomsTissue	0.11	0.01	0.12
XhybExamples-class	0.06	0.00	0.06
ex1	0.05	0.00	0.05
runSimulation	0.03	0.02	0.05