BioC 2.13: CHECK report for TargetScore on moscato1

Package: TargetScore

Version: 1.0.0

Command: rm -rf TargetScore.buildbin-libdir && mkdir TargetScore.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=TargetScore.buildbin-libdir TargetScore_1.0.0.tar.gz >TargetScore-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=TargetScore.buildbin-libdir --install="check:TargetScore-install.out" --force-multiarch --no-vignettes --timings TargetScore_1.0.0.tar.gz && mv TargetScore.buildbin-libdir/* TargetScore.Rcheck/ && rmdir TargetScore.buildbin-libdir

StartedAt: 2014-04-05 07:07:50 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 07:09:49 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 119.2 seconds

RetCode: 0

Status:  OK

CheckDir: TargetScore.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/TargetScore.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TargetScore/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TargetScore' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TargetScore' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in 'inst/doc':
  'TargetScore.Rnw'
A 'vignettes' directory will be required as from R 3.1.0
* checking examples ...
** running examples for arch 'i386' ... [7s] OK
** running examples for arch 'x64' ... [9s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-bioc/meat/TargetScore.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'TargetScore' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'TargetScore' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TargetScore' as TargetScore_1.0.0.zip
* DONE (TargetScore)

name	user	system	elapsed
TargetScore-package	0	0	0
bsxfun.se	0	0	0
dot.ext	0.02	0.00	0.02
getTargetScores	0	0	0
initialization	0	0	0
logmvgamma	0	0	0
logsumexp	0	0	0
sort_components	0.22	0.00	0.22
targetScore	2.31	0.01	2.32
vbgmm	0.33	0.00	0.33
vbound	0.33	0.00	0.32
vexp	0.31	0.00	0.31
vmax	0.32	0.00	0.31

name	user	system	elapsed
TargetScore-package	0.12	0.00	0.13
bsxfun.se	0.13	0.00	0.14
dot.ext	0	0	0
getTargetScores	0.13	0.00	0.12
initialization	0.01	0.00	0.02
logmvgamma	0	0	0
logsumexp	0.02	0.00	0.01
sort_components	0.18	0.02	0.21
targetScore	1.67	0.00	1.67
vbgmm	0.22	0.00	0.21
vbound	0.22	0.00	0.22
vexp	0.20	0.00	0.21
vmax	0.21	0.00	0.20