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Package 70/553HostnameOS / ArchBUILDCHECKBUILD BIN
BioNet 1.14.3
Marcus Dittrich
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/BioNet
Last Changed Rev: 67266 / Revision: 69725
Last Changed Date: 2012-07-04 04:38:19 -0700 (Wed, 04 Jul 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: BioNet
Version: 1.14.3
Command: /home/biocbuild/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings BioNet_1.14.3.tar.gz
StartedAt: 2012-09-23 23:39:38 -0700 (Sun, 23 Sep 2012)
EndedAt: 2012-09-23 23:43:34 -0700 (Sun, 23 Sep 2012)
EllapsedTime: 236.5 seconds
RetCode: 0
Status:  OK 
CheckDir: BioNet.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/BioNet.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BioNet/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BioNet’ version ‘1.14.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘BioNet’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc       1.4Mb
    extdata   3.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/BioNet.Rcheck/00check.log’
for details.

BioNet.Rcheck/00install.out:

* installing *source* package ‘BioNet’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘Tutorial.Rnw’ 
** testing if installed package can be loaded

* DONE (BioNet)

BioNet.Rcheck/BioNet-Ex.timings:

nameusersystemelapsed
aggrPvals0.7600.0320.793
bumOptim1.4040.0081.455
compareNetworks2.3400.0362.517
consensusScores0.3480.0000.367
fbum000
fbumLL1.6920.0001.710
fdrThreshold1.1200.0001.121
fitBumModel1.6240.0041.683
getCompScores3.2930.0243.433
getEdgeList1.5720.0281.597
hist.bum1.9360.0121.949
largestComp11.185 0.04811.957
largestScoreComp13.296 0.04013.360
loadNetwork.sif000
makeNetwork0.0120.0000.012
mapByVar000
permutateNodes15.941 0.02416.070
piUpper1.6880.0081.716
plot.bum1.5650.0041.567
plot3dModule3.7480.0043.752
plotLLSurface1.3720.0001.377
plotModule4.1920.0124.204
print.bum1.7000.0001.698
pvaluesExample0.0080.0000.007
readHeinzGraph0.2680.0040.273
readHeinzTree0.3400.0040.344
resamplingPvalues6.9330.0687.011
rmSelfLoops0.0040.0040.007
runFastHeinz9.6280.0009.649
save3dModule2.3520.0082.363
saveNetwork1.8930.0041.898
scanFDR1.2720.0001.276
scoreFunction1.3000.0241.320
scoreNodes3.2360.0123.278
scoreOffset1.3320.0001.365
sortedEdgeList4.6960.0084.707
subNetwork0.0360.0000.035
summary.bum1.1640.0001.170
writeHeinz2.3010.0042.318
writeHeinzEdges4.7600.0084.792
writeHeinzNodes2.6440.0042.649