Package: sscore

Version: 1.10.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check sscore_1.10.0.tar.gz

RetCode: 0

Time: 63.5 seconds

Status: OK

CheckDir: sscore.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/sscore.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'sscore/DESCRIPTION' ... OK
* this is package 'sscore' version '1.10.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'sscore' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
computeAffxSFandSDT: no visible binding for global variable 'logI'
computeSFandSDT: no visible binding for global variable 'logI'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating sscore-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating sscore-manual.tex ... OK
* checking sscore-manual.tex ... OK

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/sscore.Rcheck


---------- Making package sscore ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'sscore'
     Formats: text html latex example chm 
  OneStepBiweightAlgorithm          text    html    latex           chm
  SScore                            text    html    latex   example chm
  SScoreBatch                       text    html    latex   example chm
  computeAffxRawQ                   text    html    latex           chm
  computeAffxSFandSDT               text    html    latex   example chm
  computeOutlier                    text    html    latex   example chm
  computeRawQ                       text    html    latex           chm
  computeSFandSDT                   text    html    latex   example chm
  computeZoneIInfo                  text    html    latex           chm
  computeZonenoise                  text    html    latex           chm
  trimMean                          text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\sscore.Rcheck\00_pkg_src\sscore\chm\sscore.chm


Compile time: 0 minutes, 0 seconds
12	Topics
28	Local links
16	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\sscore.Rcheck\00_pkg_src\sscore\chm\sscore.chm, 28,767 bytes
Compression decreased file by 17,740 bytes.
  preparing package sscore for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affyio
Loading required package: preprocessCore
  adding MD5 sums

* DONE (sscore)