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lumi 1.4.0
Pan Du
Last Changed Date: 2007-10-02 17:41:09 -0700
Last Changed Rev: 27709
lamb1 Linux (SUSE 10.1) x86_64  OK [ OK ]
wellington Linux (SUSE 9.2) i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  OK  OK 
pitt Mac OS X (10.4.10) i386  OK  OK  OK 
Package: lumi
Version: 1.4.0
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check lumi_1.4.0.tar.gz
RetCode: 0
Time: 236.6 seconds
Status: OK
CheckDir: lumi.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.1-bioc/meat/lumi.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'lumi/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'lumi' version '1.4.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'lumi' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating lumi-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating lumi-manual.tex ... OK
* checking lumi-manual.tex ... OK

lumi.Rcheck/00install.out:

* Installing *source* package 'lumi' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: mgcv
This is mgcv 1.3-27 
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Creating a new generic function for "pairs" in "lumi"
Creating a new generic function for "plot" in "lumi"
** help
 >>> Building/Updating help pages for package 'lumi'
     Formats: text html latex example 
  LumiBatch-class                   text    html    latex   example
  MAplot-methods                    text    html    latex   example
  addNuId2lumi                      text    html    latex   example
  bgAdjust                          text    html    latex   example
  boxplot-methods                   text    html    latex   example
  density-methods                   text    html    latex   example
  detectOutlier                     text    html    latex   example
  detectionCall                     text    html    latex   example
  estimateLumiCV                    text    html    latex   example
  example.lumi                      text    html    latex   example
  hist-methods                      text    html    latex   example
  id2seq                            text    html    latex   example
  inverseVST                        text    html    latex   example
  is.nuID                           text    html    latex   example
  lumi.package                      text    html    latex   example
  lumiB                             text    html    latex   example
  lumiExpresso                      text    html    latex   example
  lumiN                             text    html    latex   example
  lumiQ                             text    html    latex   example
  lumiR                             text    html    latex   example
  lumiR.batch                       text    html    latex   example
  lumiT                             text    html    latex   example
  monoSmu                           text    html    latex   example
  monoSpline                        text    html    latex   example
  nuID2probeID                      text    html    latex   example
  nuID2targetID                     text    html    latex   example
  pairs-methods                     text    html    latex   example
  plot-methods                      text    html    latex   example
  plotSampleRelation                text    html    latex   example
  plotVST                           text    html    latex   example
  probeID2nuID                      text    html    latex   example
  rsn                               text    html    latex   example
  seq2id                            text    html    latex   example
  targetID2nuID                     text    html    latex   example
  vst                               text    html    latex   example
** building package indices ...
* DONE (lumi)