* using log directory 'C:/R/biocbld/1.7/build-area/buildSandbox/checkOutput/annotate.Rcheck'
* using R version 2.2.0, 2005-10-10 
* checking for file 'annotate/DESCRIPTION' ... OK
* this is package 'annotate' version '1.8.0'
* checking if this is a source package ... OK
* checking whether package 'annotate' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking package dependencies ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating annotate-Ex.R ... OK
* checking examples ... ERROR
Running examples in annotate-Ex.R failed.
The error most likely occurred in:

> ### * accessionToUID
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: accessionToUID
> ### Title: A function to convert accession values to NCBI UIDs.
> ### Aliases: accessionToUID
> ### Keywords: interface
> 
> ### ** Examples
> 
> 
>      ## The two returns from genbank should be the same
>      genbank("U03397",type="accession",disp="data")
Loading required package: XML
[1] "No XML records available for accession number U03397"
NULL
>      x <- accessionToUID("U03397",db="genbank")
>      genbank(x, type="uid",disp="data")
http://www.ncbi.nih.gov/entrez/utils/pmqty.fcgi?db=nucleotide&tool=bioconductor&mode=xml&term=U03397:1: parser error : Start tag expected, '<' not found
Content-Type: text/html; charset=UTF-8
^
http://www.ncbi.nih.gov/entrez/utils/pmqty.fcgi?db=nucleotide&tool=bioconductor&mode=xml&term=U03397:1: parser error : Start tag expected, '<' not found
Content-Type: text/html; charset=UTF-8
^
Error in genbank(x, type = "uid", disp = "data") : 
	No Gene ID, cannot proceed
Execution halted