tartare
Raw ground spectra recorded on Thermo Fisher Scientific mass spectrometers
Bioconductor version: Release (3.20)
Provides raw files recorded on different Liquid Chromatography Mass Spectrometry (LC-MS) instruments. All included MS instruments are manufactured by Thermo Fisher Scientific and belong to the Orbitrap Tribrid or Q Exactive Orbitrap family of instruments. Despite their common origin and shared hardware components, e.g., Orbitrap mass analyser, the above instruments tend to write data in different "dialects" in a shared binary file format (.raw). The intention behind tartare is to provide complex but slim real-world files that can be used to make code robust with respect to this diversity. In other words, it is intended for enhanced unit testing. The package is considered to be used with the rawrr package and the Spectra MsBackends.
Author: Christian Panse [aut, cre] 
, Tobias Kockmann [aut]
Maintainer: Christian Panse <cp at fgcz.ethz.ch>
citation("tartare")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tartare")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tartare")| make and use tartare data | HTML | R Script |
| Reference Manual |
Details
| biocViews | ExperimentData, ExperimentHub, MassSpectrometryData |
| Version | 1.19.0 |
| License | GPL-3 |
| Depends | R (>= 4.1), AnnotationHub(>= 2.16), ExperimentHub(>= 1.0) |
| Imports | utils |
| System Requirements | |
| URL | https://github.com/cpanse/tartare |
| Bug Reports | https://github.com/cpanse/tartare/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat, tools |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | MsBackendRawFileReader, rawDiag, rawrr |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | tartare_1.19.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/tartare |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tartare |
| Package Short Url | https://bioconductor.org/packages/tartare/ |
| Package Downloads Report | Download Stats |