tenXplore

ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics


Bioconductor version: Release (3.19)

Perform ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("tenXplore")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tenXplore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tenXplore")
tenXplore: ontology for scRNA-seq, applied to 10x 1.3 million neurons HTML R Script
Reference Manual PDF

Details

biocViews DimensionReduction, ImmunoOncology, PrincipalComponent, SingleCell, Software, Transcriptomics
Version 1.26.2
In Bioconductor since BioC 3.6 (R-3.4) (7 years)
License Artistic-2.0
Depends R (>= 4.0), shiny
Imports methods, ontoProc(>= 0.99.7), SummarizedExperiment, AnnotationDbi, matrixStats, org.Mm.eg.db, stats, utils, BiocFileCache
System Requirements
URL
See More
Suggests org.Hs.eg.db, testthat, knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tenXplore_1.26.2.tar.gz
Windows Binary tenXplore_1.26.2.zip (64-bit only)
macOS Binary (x86_64) tenXplore_1.26.2.tgz
macOS Binary (arm64) tenXplore_1.26.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/tenXplore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tenXplore
Bioc Package Browser https://code.bioconductor.org/browse/tenXplore/
Package Short Url https://bioconductor.org/packages/tenXplore/
Package Downloads Report Download Stats